Prupe.5G119900_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
12002716 .. 12004894
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G119900.1

Sequence Viewer

Length: 1431 bp
ATGGCCACCTTAGAAATCTTCACCTTGTTATTCTTCTTGTTCTTCTTCCTTCCTCACACACCAGCAAGAGCTACAACATGTCCTCGATCAAAATGCACAGCCGGCAGCCCATCGGTTCGCTTCCCTTTTCGGATAAGCAACCTTCAACCCTTACATTGTGGATATCCAGGGTTTGATCTCTCGTGCAACAACGAATCTCAAACCATTCTCACTCTCCCATCTTCCGGAGACTTCATCGTCCAGACCATCAGTTACAAGGACCAAATCGTATTGATCAACGACCCCGATAACTGCCTCCCTAAGCGGTTCCTCGACCATGACATAACTCTTAAAGATTCACCCTTCAACTACGCTCATGGCCTCGAAACCTACATGTTCCTCAACTGCTCGGCTGCAGCTGCAGCTGCAGCAACATGGACTTTTGCACCAATTTCTTGCTTGAGCAATGAGAACTACAAGGTCATTGCAGCTCCAACGAGCTTGTTATCACCGCCGGGTAACGTTTCAGGGCAGTGCGTTGTGATTTCAACAGCTTTGATTCCCAGCTTATTTGATCCGTTGCAAGGTGTTCAACTGGGATGGCTCGAGCCTGAATGTATTTCTTGTGAAGCAGCTGGTCATTATTGTGGATTCGACAGTGCAAGTTCGCAAATTAAGTGCCTTGATCCTTCAGATTTCTTCTCTTCAGGTCTCTCAAGAGTTGCAAAGTTTGGCATAATGATAATCATGGGAATTCCTGGGCTTTTGTCCATCATTGGGATTGCGGTTTGTGTTTGTGACTCGATAGGTGCCGGTAGTCGGTCCCACCAGCCAATTGCAGAACTATCCACAGTAAGCAATCGAGAACCTCACATGCTCAGAATGGGGCTTGATGGTCAGACCATCGAGTCATATCCTAAGACTCAACTTGGTGAGAGTTTGGAATTGCCCGAGCCCAAGGACAACACTTGCCCGATATGTTTGGGAGAGTACAAAGCCAAGGCAATACTGAGGACTATACCAGGTTGCAGCCATTATTTTCATGCCAGTTGTATAGATGAGTGGCTTAGATTGAATGCAACTTGCCCCATTTGTCGAAATCAATCGAACAAACAAGCGCTGCAAAAACCACCGCCTGCGGTAGTTCAACATGCACCGCTGGTGCCTGGTGGCCTACTGGTTCGTTTCCCTTTCCAACTAAAAAACAACCAAGTCCCAAGTAATTGTGGGTATCCAGGGTTTGATATCTCATGTGAGAGCTGGGAATTGCCTGTGCCTAATGACAACATTTGCTCAATATGCTTGCGCGAGTACCAGCCCAAGGAAGTTTTGCGGACCATACCTGAATGCAACCATTATTTTCATGCTAATTGTATAGATGAGTGGCTTAGAAGGAATGCAACATGCCCTCTTTGTCGAAATCTACAAGAGAGATACATAAATAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

477

Amino Acids

52.46

Weight (kDa)

6.18

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 236, 886
AccB1I GGYRCC 2 cut(s) 788, 1141
AccII CGCG 1 cut(s) 1287
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 7 cut(s) 304, 491, 764, 1112, 1118, 1136, 1312
AclI AACGTT 1 cut(s) 501
AclWI GGATC 2 cut(s) 548, 659
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 2 cut(s) 654, 669
AfaI GTAC 2 cut(s) 971, 1292
AfeI AGCGCT 1 cut(s) 1098
AfiI CCNNNNNNNGG 5 cut(s) 224, 563, 756, 798, 1300
AflIII ACRYGT 2 cut(s) 77, 372
AgsI TTSAA 6 cut(s) 146, 346, 528, 572, 1054, 1127
AjnI CCWGG 5 cut(s) 166, 736, 1000, 1144, 1213
AluBI AGCT 9 cut(s) 71, 398, 404, 470, 480, 533, 546, 614, 1239
AluI AGCT 9 cut(s) 71, 398, 404, 470, 480, 533, 546, 614, 1239
Alw26I GTCTC 2 cut(s) 222, 695
AlwI GGATC 2 cut(s) 548, 659
Ama87I CYCGRG 2 cut(s) 584, 929
Aor13HI TCCGGA 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 1098
AoxI GGCC 3 cut(s) 3, 358, 1150
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 2 cut(s) 1099, 1287
AspS9I GGNCC 3 cut(s) 259, 801, 1314
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 4 cut(s) 13, 330, 480, 923
AvaI CYCGRG 2 cut(s) 584, 929
AvaII GGWCC 3 cut(s) 259, 801, 1314
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 788, 1141
BanII GRGCYC 1 cut(s) 936
BauI CACGAG 1 cut(s) 181
BccI CCATC 7 cut(s) 118, 226, 254, 573, 758, 866, 890
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 5 cut(s) 168, 738, 1002, 1146, 1215
BciVI GTATCC 1 cut(s) 1221
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 2 cut(s) 222, 695
BfmI CTRYAG 3 cut(s) 393, 399, 405
BfoI RGCGCY 1 cut(s) 1100
BfuI GTATCC 1 cut(s) 1221
Bme1390I CCNGG 6 cut(s) 168, 495, 738, 1002, 1146, 1215
Bme18I GGWCC 3 cut(s) 259, 801, 1314
BmeT110I CYCGRG 2 cut(s) 584, 929
BmgT120I GGNCC 3 cut(s) 259, 801, 1314
BmiI GGNNCC 4 cut(s) 308, 790, 803, 1143
BmrFI CCNGG 6 cut(s) 168, 495, 738, 1002, 1146, 1215
BmrI ACTGGG 1 cut(s) 584
BmuI ACTGGG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 460, 679
BpuMI CCSGG 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 6 cut(s) 167, 737, 936, 978, 1214, 1299
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 563, 756, 798, 1300
Bse118I RCCGGY 2 cut(s) 101, 791
Bse1I ACTGG 3 cut(s) 579, 1026, 1161
Bse3DI GCAATG 2 cut(s) 451, 462
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 5 cut(s) 168, 738, 1002, 1146, 1215
BseDI CCNNGG 6 cut(s) 167, 737, 936, 978, 1214, 1299
BseGI GGATG 1 cut(s) 584
BseLI CCNNNNNNNGG 5 cut(s) 224, 563, 756, 798, 1300
BseMI GCAATG 2 cut(s) 451, 462
BseMII CTCAG 2 cut(s) 871, 980
BseNI ACTGG 3 cut(s) 579, 1026, 1161
BseYI CCCAGC 2 cut(s) 542, 1239
Bsh1236I CGCG 1 cut(s) 1287
BshFI GGCC 3 cut(s) 5, 360, 1152
BshNI GGYRCC 2 cut(s) 788, 1141
BsiHKCI CYCGRG 2 cut(s) 584, 929
BsiSI CCGG 4 cut(s) 102, 225, 494, 792
BslFI GGGAC 2 cut(s) 787, 1178
BslI CCNNNNNNNGG 5 cut(s) 224, 563, 756, 798, 1300
BsmAI GTCTC 2 cut(s) 222, 695
BsmFI GGGAC 2 cut(s) 787, 1178
BsmI GAATGC 3 cut(s) 1060, 1331, 1381
BsnI GGCC 3 cut(s) 5, 360, 1152
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 2 cut(s) 584, 929
Bsp1286I GDGCHC 1 cut(s) 936
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 5 cut(s) 86, 175, 273, 553, 664
BspACI CCGC 7 cut(s) 304, 491, 764, 1112, 1118, 1136, 1312
BspANI GGCC 3 cut(s) 5, 360, 1152
BspCNI CTCAG 2 cut(s) 870, 981
BspEI TCCGGA 1 cut(s) 224
BspFNI CGCG 1 cut(s) 1287
BspLI GGNNCC 4 cut(s) 308, 790, 803, 1143
BspMAI CTGCAG 3 cut(s) 397, 403, 409
BspPI GGATC 2 cut(s) 548, 659
BspT107I GGYRCC 2 cut(s) 788, 1141
BspTNI GGTCTC 1 cut(s) 695
BsrDI GCAATG 2 cut(s) 451, 462
BsrFI RCCGGY 2 cut(s) 101, 791
BsrI ACTGG 3 cut(s) 579, 1026, 1161
BssAI RCCGGY 2 cut(s) 101, 791
BssECI CCNNGG 6 cut(s) 167, 737, 936, 978, 1214, 1299
BssMI GATC 5 cut(s) 86, 175, 273, 553, 664
BssSI CACGAG 1 cut(s) 181
BssT1I CCWWGG 3 cut(s) 936, 978, 1299
Bst2BI CACGAG 1 cut(s) 181
Bst2UI CCWGG 5 cut(s) 168, 738, 1002, 1146, 1215
Bst4CI ACNGT 2 cut(s) 638, 832
Bst6I CTCTTC 1 cut(s) 688
BstC8I GCNNGC 3 cut(s) 103, 1116, 1283
BstDEI CTNAG 7 cut(s) 10, 300, 857, 897, 989, 1046, 1367
BstF5I GGATG 1 cut(s) 584
BstFNI CGCG 1 cut(s) 1287
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 2 cut(s) 1099, 1287
BstKTI GATC 5 cut(s) 89, 178, 276, 556, 667
BstMAI GTCTC 2 cut(s) 222, 695
BstMBI GATC 5 cut(s) 86, 175, 273, 553, 664
BstMWI GCNNNNNNNGC 6 cut(s) 102, 398, 401, 404, 407, 1278
BstNI CCWGG 5 cut(s) 168, 738, 1002, 1146, 1215
BstNSI RCATGY 5 cut(s) 81, 376, 856, 1133, 1386
BstSCI CCNGG 6 cut(s) 166, 493, 736, 1000, 1144, 1213
BstSFI CTRYAG 3 cut(s) 393, 399, 405
BstUI CGCG 1 cut(s) 1287
BsuI GTATCC 1 cut(s) 1221
BsuRI GGCC 3 cut(s) 5, 360, 1152
BtsCI GGATG 1 cut(s) 584
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 2 cut(s) 518, 643
Cac8I GCNNGC 3 cut(s) 103, 1116, 1283
CfoI GCGC 2 cut(s) 1099, 1287
Cfr10I RCCGGY 2 cut(s) 101, 791
Cfr13I GGNCC 3 cut(s) 259, 801, 1314
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 2 cut(s) 970, 1291
CviQI GTAC 2 cut(s) 970, 1291
DdeI CTNAG 7 cut(s) 10, 300, 857, 897, 989, 1046, 1367
DpnI GATC 5 cut(s) 88, 177, 275, 555, 666
DpnII GATC 5 cut(s) 86, 175, 273, 553, 664
DrdI GACNNNNNNGTC 2 cut(s) 236, 886
DseDI GACNNNNNNGTC 2 cut(s) 236, 886
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
Eco130I CCWWGG 3 cut(s) 936, 978, 1299
Eco24I GRGCYC 1 cut(s) 936
Eco31I GGTCTC 1 cut(s) 695
Eco32I GATATC 2 cut(s) 164, 1225
Eco47I GGWCC 3 cut(s) 259, 801, 1314
Eco47III AGCGCT 1 cut(s) 1098
Eco57I CTGAAG 2 cut(s) 654, 669
Eco88I CYCGRG 2 cut(s) 584, 929
EcoRI GAATTC 1 cut(s) 732
EcoRII CCWGG 5 cut(s) 166, 736, 1000, 1144, 1213
EcoRV GATATC 2 cut(s) 164, 1225
EcoT14I CCWWGG 3 cut(s) 936, 978, 1299
EcoT38I GRGCYC 1 cut(s) 936
ErhI CCWWGG 3 cut(s) 936, 978, 1299
FaqI GGGAC 2 cut(s) 787, 1178
FbaI TGATCA 1 cut(s) 273
FokI GGATG 1 cut(s) 591
FriOI GRGCYC 1 cut(s) 936
GlaI GCGC 2 cut(s) 1098, 1286
GsaI CCCAGC 2 cut(s) 546, 1243
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 3 cut(s) 5, 360, 1152
HapII CCGG 4 cut(s) 102, 225, 494, 792
HhaI GCGC 2 cut(s) 1099, 1287
Hin6I GCGC 2 cut(s) 1097, 1285
HinP1I GCGC 2 cut(s) 1097, 1285
HinfI GANTC 7 cut(s) 194, 335, 538, 630, 779, 887, 901
HpaII CCGG 4 cut(s) 102, 225, 494, 792
HphI GGTGA 4 cut(s) 13, 330, 480, 923
Hpy188I TCNGA 4 cut(s) 132, 673, 860, 879
Hpy188III TCNNGA 4 cut(s) 225, 241, 696, 842
HpyAV CCTTC 5 cut(s) 59, 152, 352, 678, 1365
HpyCH4III ACNGT 2 cut(s) 638, 832
HpyCH4IV ACGT 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 398, 401, 404, 407, 1278
HpyF3I CTNAG 7 cut(s) 10, 300, 857, 897, 989, 1046, 1367
HpySE526I ACGT 1 cut(s) 501
HspAI GCGC 2 cut(s) 1097, 1285
Kpn2I TCCGGA 1 cut(s) 224
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 86, 175, 273, 553, 664
LmnI GCTCC 1 cut(s) 475
MabI ACCWGGT 1 cut(s) 1000
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 251, 497, 776
MalI GATC 5 cut(s) 88, 177, 275, 555, 666
MboI GATC 5 cut(s) 86, 175, 273, 553, 664
MboII GAAGA 7 cut(s) 10, 25, 34, 37, 213, 670, 675
MfeI CAATTG 1 cut(s) 813
MhlI GDGCHC 1 cut(s) 936
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 429, 651, 732, 813, 923, 1201, 1244, 1348
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 773, 895, 896
MmeI TCCRAC 2 cut(s) 497, 1198
MnlI CCTC 9 cut(s) 63, 93, 305, 320, 371, 389, 858, 984, 1398
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 330, 654
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 4 cut(s) 398, 404, 614, 1138
MspI CCGG 4 cut(s) 102, 225, 494, 792
MspR9I CCNGG 6 cut(s) 168, 495, 738, 1002, 1146, 1215
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 3 cut(s) 1060, 1331, 1381
MvaI CCWGG 5 cut(s) 168, 738, 1002, 1146, 1215
MvnI CGCG 1 cut(s) 1287
MwoI GCNNNNNNNGC 6 cut(s) 102, 398, 401, 404, 407, 1278
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 495
NdeII GATC 5 cut(s) 86, 175, 273, 553, 664
NgoMIV GCCGGC 1 cut(s) 101
NlaIV GGNNCC 4 cut(s) 308, 790, 803, 1143
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 776
NspI RCATGY 5 cut(s) 81, 376, 856, 1133, 1386
PaeR7I CTCGAG 1 cut(s) 584
PciI ACATGT 2 cut(s) 77, 372
PctI GAATGC 3 cut(s) 1060, 1331, 1381
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 4 cut(s) 194, 335, 538, 630
PleI GAGTC 3 cut(s) 773, 895, 895
PpsI GAGTC 3 cut(s) 773, 895, 895
PscI ACATGT 2 cut(s) 77, 372
Psp1406I AACGTT 1 cut(s) 501
Psp6I CCWGG 5 cut(s) 166, 736, 1000, 1144, 1213
PspFI CCCAGC 2 cut(s) 542, 1239
PspGI CCWGG 5 cut(s) 166, 736, 1000, 1144, 1213
PspN4I GGNNCC 4 cut(s) 308, 790, 803, 1143
PspPI GGNCC 3 cut(s) 259, 801, 1314
PspXI VCTCGAGB 1 cut(s) 584
PstI CTGCAG 3 cut(s) 397, 403, 409
PvuII CAGCTG 3 cut(s) 398, 404, 614
RsaI GTAC 2 cut(s) 971, 1292
RsaNI GTAC 2 cut(s) 970, 1291
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 2 cut(s) 330, 654
Sau3AI GATC 5 cut(s) 86, 175, 273, 553, 664
Sau96I GGNCC 3 cut(s) 259, 801, 1314
SchI GAGTC 3 cut(s) 773, 895, 896
ScrFI CCNGG 6 cut(s) 168, 495, 738, 1002, 1146, 1215
SduI GDGCHC 1 cut(s) 936
SexAI ACCWGGT 1 cut(s) 1000
SfcI CTRYAG 3 cut(s) 393, 399, 405
Sfr274I CTCGAG 1 cut(s) 584
SinI GGWCC 3 cut(s) 259, 801, 1314
SlaI CTCGAG 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 3 cut(s) 439, 584, 694
SmoI CTYRAG 3 cut(s) 439, 584, 694
Sse9I AATT 8 cut(s) 429, 651, 732, 813, 923, 1201, 1244, 1348
SsiI CCGC 7 cut(s) 304, 491, 764, 1112, 1118, 1136, 1312
StyD4I CCNGG 6 cut(s) 166, 493, 736, 1000, 1144, 1213
StyI CCWWGG 3 cut(s) 936, 978, 1299
TaaI ACNGT 2 cut(s) 638, 832
TaiI ACGT 1 cut(s) 504
TaqII GACCGA 1 cut(s) 789
TasI AATT 8 cut(s) 429, 651, 732, 813, 923, 1201, 1244, 1348
TatI WGTACW 1 cut(s) 969
TfiI GAWTC 4 cut(s) 194, 335, 538, 630
Tru1I TTAA 2 cut(s) 330, 654
Tru9I TTAA 2 cut(s) 330, 654
TscAI CASTG 2 cut(s) 518, 643
TseFI GTSAC 1 cut(s) 776
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 3 cut(s) 223, 1010, 1331
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 2 cut(s) 518, 643
VpaK11BI GGWCC 3 cut(s) 259, 801, 1314
XapI RAATTY 1 cut(s) 732
XceI RCATGY 5 cut(s) 81, 376, 856, 1133, 1386
XhoI CTCGAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.