RchiOBHm_Chr7g0194861

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000675
Physical Location & Seq
Forward (+)
12871274 .. 12871777
504 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17426

Sequence Viewer

Length: 504 bp
ATGAAACTGAATATTATCGTTTCAGTACACCAGAGCAAATCAGGCGTCTCTTTCCGTCTCTCAACTGCAACATACATAGGCGGGGGAATGCTTGTGCTATTGTTCATCTGCGTGTTTGCAATATGTTGTTTTGCTAAACCACCTAGCGATGTACCCACCACAGAATGGTTGGCGGTAACAAATCATCAACATCAACGAACTCCTTCGGCATTGGCGCTCAATAGTGTGACTACCGAAGCATATCCCAAGACTCAACTTGGTGATGAGAGTTTGGAACTGCCTAACCCCAATGAAAAAACTTGTGCAATATGTTTGTGCGAGTACCAGCGAAAGGAAACAATAAAGACTATACCACGATGCAACCATTACTTTCATGTTACTTGCATAGATGAGTGGTTTAAAACGAATGTGACGTGCCCACTTTGCCGAAACCCACCGAACAATGAGGGGCTTGGTTTCCCTGGACAACCTTTGCAAGATATGAGTGTTGGTTTCTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

6.92

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 99 - 143 1.9e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 100 - 143 2.4e-13 Ring finger domain
zf-RING_11 PF17123 101 - 129 1.1e-07 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 165
AciI CCGC 2 cut(s) 81, 173
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 3 cut(s) 27, 153, 323
AfiI CCNNNNNNNGG 2 cut(s) 165, 331
AjiI CACGTC 1 cut(s) 414
AjnI CCWGG 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 52, 62
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
Asp700I GAANNNNTTC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 52, 62
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 331
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 165, 331
BseSI GKGCMC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 165, 331
BsmAI GTCTC 2 cut(s) 52, 62
BsmBI CGTCTC 2 cut(s) 52, 62
BsmI GAATGC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 419
BspACI CCGC 2 cut(s) 81, 173
BssECI CCNNGG 1 cut(s) 460
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstMAI GTCTC 2 cut(s) 52, 62
BstMWI GCNNNNNNNGC 2 cut(s) 42, 423
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 500
BstSLI GKGCMC 1 cut(s) 419
BtgZI GCGATG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 414
CfoI GCGC 1 cut(s) 217
CseI GACGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 26, 152, 322
CviAII CATG 1 cut(s) 374
CviJI RGCY 1 cut(s) 451
CviKI_1 RGCY 1 cut(s) 451
CviQI GTAC 3 cut(s) 26, 152, 322
DraI TTTAAA 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 460
Esp3I CGTCTC 2 cut(s) 52, 62
FaeI CATG 1 cut(s) 377
FaiI YATR 9 cut(s) 73, 77, 124, 241, 310, 350, 375, 386, 482
FatI CATG 1 cut(s) 373
FauI CCCGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 218
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 1 cut(s) 250
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 6 cut(s) 68, 119, 305, 360, 384, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 423
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 27, 44, 338, 447, 474
LweI GCATC 1 cut(s) 347
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 4 cut(s) 175, 226, 376, 409
MhlI GDGCHC 1 cut(s) 419
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 42, 423
NlaIII CATG 1 cut(s) 377
NmuCI GTSAC 2 cut(s) 226, 409
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PctI GAATGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 165
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
RsaI GTAC 3 cut(s) 27, 153, 323
RsaNI GTAC 3 cut(s) 26, 152, 322
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 399
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 419
SetI ASST 3 cut(s) 145, 416, 472
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 110
SsiI CCGC 2 cut(s) 81, 173
SspI AATATT 1 cut(s) 13
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 460
TaiI ACGT 1 cut(s) 416
TatI WGTACW 1 cut(s) 25
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TseFI GTSAC 2 cut(s) 226, 409
Tsp45I GTSAC 2 cut(s) 226, 409
TspDTI ATGAA 4 cut(s) 17, 94, 306, 362
TspGWI ACGGA 1 cut(s) 44
Van91I CCANNNNNTGG 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.