Prupe.5G118700_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
11966237 .. 11967506
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G118700.1

Sequence Viewer

Length: 1140 bp
ATGGCTCCCTTAGCAATCTTCACCATCTCCTTATGCTGCTGCTGCTTCTTCTTCTTCTTCTTCCCTCATAAAGTAGCAAGCGCTACCAACTGTGTTGAATCAACATGCACACCGGCCGGCGCACGGGTTCGATTTCCTTTCTGGCTAAGAAACCTTCAACCCTCAAGTTGTGGATATCAAGGGTTTGATCTCTCATGCAACAACCAAACCATTCTCACTCTCCCATCTTCCGGGGACTTCTTCGTCAAGACCATCAGCTACAAGGACCAAATCGTATGGCTCAGCGACCCCGATAACTGCCTCCCTAAGCGGTTCCTTGACGATGACGTCAGTCTTCAAGGTACACCCTTCTTATTTGCTCAGGACCTTGAGACATACACTTTCCTCAACTGCTCAGCATCCCAAGCAACAGAGTCTTCAGCCATCCCTTGCCTCAGTAGTGACTCTTACGACGTCATTATCGTGGCATCGGGTTGGTCAACGTCGTTGTCAACGGCTAATCATGCATCGTCATCATCTCTCTGCTCTGTGATTTCGACAGCTCTGGTTCCACCAAGTTTGGTTGAGGGATATCTTAGCTCTAGTCTCCAGTTGGCTTGGAGTGTGCCTGATTGTAGTTCTTGTGAAGCAAACGGTATAATTTGTGAGTTGGACAATGCTACAAGCTCACAAACTATATGTCCTCATTCAAAATCAGGTCCGTCAGGTCTTTCAAGCGCTGCAAAGAACGGCATAATGATAGGTGTGGGAATTCCAGCGCTATTTTGCGTCATTGGGCTTTCTTTTTATTTTCACAACAGAATGAGGGCTCCTGATCAGCTCCGCCAACCCGTATCTGCCGATGTACCCAATCGGCAACCTCCGGTGCTCGCAATATCGGGTCTTGATGGTCCGACCATCCAGTCATATCCCACAACTGAGCTTGGTGAAACTTGGGAACTGCCATATCCCAATGACAACACTTGCCCAATATGTTTGGCTGAGTACCAGGCCAAGGAAACATTGAGGGCTATGCCAGAATGCAACCATTATTTTCATGCTAGTTGTATAGACGAATGGCTCAAAATGAATGCGACGTGCCCACTTTGTCGAAATCCACCAGAGGCCAGCAAAATAATAAGTCCTGTGATTGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

380

Amino Acids

41.1

Weight (kDa)

4.73

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 242, 326, 901
AatII GACGTC 2 cut(s) 330, 456
AciI CCGC 2 cut(s) 310, 823
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 2 cut(s) 327, 453
AfaI GTAC 3 cut(s) 343, 846, 986
AfeI AGCGCT 3 cut(s) 82, 718, 759
AfiI CCNNNNNNNGG 3 cut(s) 123, 230, 994
AgsI TTSAA 5 cut(s) 98, 158, 338, 690, 714
AjiI CACGTC 1 cut(s) 1077
AjnI CCWGG 1 cut(s) 987
AluBI AGCT 6 cut(s) 258, 542, 579, 666, 820, 922
AluI AGCT 6 cut(s) 258, 542, 579, 666, 820, 922
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 3 cut(s) 365, 590, 1127
Aor51HI AGCGCT 3 cut(s) 82, 718, 759
AoxI GGCC 3 cut(s) 114, 990, 1104
ApeKI GCWGC 4 cut(s) 36, 39, 42, 719
ApoI RAATTY 1 cut(s) 750
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
AspLEI GCGC 4 cut(s) 83, 122, 719, 760
AspS9I GGNCC 4 cut(s) 265, 364, 698, 890
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 13, 938
AvaII GGWCC 4 cut(s) 265, 364, 698, 890
BaeGI GKGCMC 1 cut(s) 1082
BanII GRGCYC 1 cut(s) 811
BbsI GAAGAC 2 cut(s) 326, 408
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 4 cut(s) 23, 26, 29, 706
BccI CCATC 6 cut(s) 32, 232, 260, 431, 881, 905
BceAI ACGGC 2 cut(s) 510, 745
BciT130I CCWGG 1 cut(s) 989
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 365, 590, 1127
BfaI CTAG 2 cut(s) 582, 1041
BfoI RGCGCY 3 cut(s) 84, 720, 761
BisI GCNGC 4 cut(s) 37, 40, 43, 720
BlpI GCTNAGC 2 cut(s) 281, 394
BlsI GCNGC 4 cut(s) 38, 41, 44, 721
Bme1390I CCNGG 2 cut(s) 232, 989
Bme18I GGWCC 4 cut(s) 265, 364, 698, 890
BmgBI CACGTC 1 cut(s) 1077
BmgT120I GGNCC 4 cut(s) 265, 364, 698, 890
BmiI GGNNCC 4 cut(s) 6, 314, 549, 810
BmrFI CCNGG 2 cut(s) 232, 989
BmsI GCATC 3 cut(s) 407, 476, 515
BoxI GACNNNNGTC 1 cut(s) 330
BpiI GAAGAC 2 cut(s) 326, 408
BpmI CTGGAG 1 cut(s) 572
Bpu10I CCTNAGC 3 cut(s) 10, 306, 360
Bpu1102I GCTNAGC 2 cut(s) 281, 394
BpuEI CTTGAG 2 cut(s) 148, 389
BpuMI CCSGG 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 327, 453
BsaJI CCNNGG 2 cut(s) 231, 993
BsaWI WCCGGW 1 cut(s) 862
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 230, 994
Bse118I RCCGGY 2 cut(s) 112, 116
Bse1I ACTGG 2 cut(s) 589, 901
BseBI CCWGG 1 cut(s) 989
BseDI CCNNGG 2 cut(s) 231, 993
BseGI GGATG 3 cut(s) 398, 423, 897
BseLI CCNNNNNNNGG 3 cut(s) 123, 230, 994
BseMII CTCAG 6 cut(s) 295, 374, 408, 448, 909, 972
BseNI ACTGG 2 cut(s) 589, 901
BseSI GKGCMC 1 cut(s) 1082
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 4 cut(s) 23, 26, 29, 706
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 116, 992, 1106
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 870
BsiSI CCGG 4 cut(s) 113, 117, 231, 863
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 123, 230, 994
BsmAI GTCTC 3 cut(s) 365, 590, 1127
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 1025, 1075
BsnI GGCC 3 cut(s) 116, 992, 1106
Bsp1286I GDGCHC 3 cut(s) 811, 870, 1082
Bsp143I GATC 2 cut(s) 187, 814
Bsp1720I GCTNAGC 2 cut(s) 281, 394
BspACI CCGC 2 cut(s) 310, 823
BspANI GGCC 3 cut(s) 116, 992, 1106
BspCNI CTCAG 6 cut(s) 294, 373, 407, 447, 910, 973
BspLI GGNNCC 4 cut(s) 6, 314, 549, 810
BsrFI RCCGGY 2 cut(s) 112, 116
BsrI ACTGG 2 cut(s) 589, 901
BssAI RCCGGY 2 cut(s) 112, 116
BssECI CCNNGG 2 cut(s) 231, 993
BssMI GATC 2 cut(s) 187, 814
BssNI GRCGYC 2 cut(s) 327, 453
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 989
Bst4CI ACNGT 2 cut(s) 92, 635
BstACI GRCGYC 2 cut(s) 327, 453
BstC8I GCNNGC 4 cut(s) 79, 118, 870, 1108
BstF5I GGATG 3 cut(s) 398, 423, 897
BstH2I RGCGCY 3 cut(s) 84, 720, 761
BstHHI GCGC 4 cut(s) 83, 122, 719, 760
BstKTI GATC 2 cut(s) 190, 817
BstMAI GTCTC 3 cut(s) 365, 590, 1127
BstMBI GATC 2 cut(s) 187, 814
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 4 cut(s) 11, 42, 404, 503
BstNI CCWGG 1 cut(s) 989
BstNSI RCATGY 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 230, 987
BstSLI GKGCMC 1 cut(s) 1082
BstV1I GCAGC 4 cut(s) 23, 26, 29, 706
BstV2I GAAGAC 2 cut(s) 326, 408
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 116, 992, 1106
BtrI CACGTC 1 cut(s) 1077
BtsCI GGATG 3 cut(s) 398, 423, 897
Cac8I GCNNGC 4 cut(s) 79, 118, 870, 1108
CfoI GCGC 4 cut(s) 83, 122, 719, 760
Cfr10I RCCGGY 2 cut(s) 112, 116
Cfr13I GGNCC 4 cut(s) 265, 364, 698, 890
CseI GACGC 1 cut(s) 757
Csp6I GTAC 3 cut(s) 342, 845, 985
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 5 cut(s) 105, 195, 503, 1037, 1137
CviQI GTAC 3 cut(s) 342, 845, 985
DpnI GATC 2 cut(s) 189, 816
DpnII GATC 2 cut(s) 187, 814
DrdI GACNNNNNNGTC 3 cut(s) 242, 326, 901
DseDI GACNNNNNNGTC 3 cut(s) 242, 326, 901
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
EciI GGCGGA 1 cut(s) 812
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 811
Eco32I GATATC 2 cut(s) 176, 572
Eco47I GGWCC 4 cut(s) 265, 364, 698, 890
Eco47III AGCGCT 3 cut(s) 82, 718, 759
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 987
EcoRV GATATC 2 cut(s) 176, 572
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 5 cut(s) 108, 198, 506, 1040, 1140
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 104, 194, 502, 1036, 1136
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 4 cut(s) 37, 40, 43, 720
FokI GGATG 3 cut(s) 385, 410, 884
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 4 cut(s) 37, 40, 43, 720
FspBI CTAG 2 cut(s) 582, 1041
GlaI GCGC 4 cut(s) 82, 121, 718, 759
GluI GCNGC 4 cut(s) 37, 40, 43, 720
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 3 cut(s) 84, 720, 761
HaeIII GGCC 3 cut(s) 116, 992, 1106
HapII CCGG 4 cut(s) 113, 117, 231, 863
HgaI GACGC 1 cut(s) 757
HhaI GCGC 4 cut(s) 83, 122, 719, 760
Hin1I GRCGYC 2 cut(s) 327, 453
Hin1II CATG 5 cut(s) 108, 198, 506, 1040, 1140
Hin6I GCGC 4 cut(s) 81, 120, 717, 758
HinP1I GCGC 4 cut(s) 81, 120, 717, 758
HincII GTYRAC 2 cut(s) 480, 492
HindII GTYRAC 2 cut(s) 480, 492
HinfI GANTC 3 cut(s) 98, 413, 443
HpaII CCGG 4 cut(s) 113, 117, 231, 863
HphI GGTGA 2 cut(s) 13, 938
Hpy166II GTNNAC 3 cut(s) 344, 480, 492
Hpy188I TCNGA 1 cut(s) 894
Hpy188III TCNNGA 4 cut(s) 247, 362, 812, 884
Hpy8I GTNNAC 3 cut(s) 344, 480, 492
Hpy99I CGWCG 3 cut(s) 455, 487, 1078
HpyAV CCTTC 2 cut(s) 164, 358
HpyCH4III ACNGT 2 cut(s) 92, 635
HpyCH4IV ACGT 4 cut(s) 327, 453, 482, 1076
HpyCH4V TGCA 5 cut(s) 108, 198, 506, 722, 1023
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 42, 404, 503
HpySE526I ACGT 4 cut(s) 327, 453, 482, 1076
Hsp92I GRCGYC 2 cut(s) 327, 453
Hsp92II CATG 5 cut(s) 108, 198, 506, 1040, 1140
HspAI GCGC 4 cut(s) 81, 120, 717, 758
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 2 cut(s) 187, 814
LmnI GCTCC 3 cut(s) 10, 814, 825
Lsp1109I GCAGC 4 cut(s) 23, 26, 29, 706
LweI GCATC 3 cut(s) 407, 476, 515
MaeI CTAG 2 cut(s) 582, 1041
MaeII ACGT 4 cut(s) 327, 453, 482, 1076
MaeIII GTNAC 1 cut(s) 440
MalI GATC 2 cut(s) 189, 816
MboI GATC 2 cut(s) 187, 814
MhlI GDGCHC 3 cut(s) 811, 870, 1082
MluCI AATT 2 cut(s) 639, 750
MlyI GAGTC 2 cut(s) 422, 437
MmeI TCCRAC 2 cut(s) 630, 917
Mph1103I ATGCAT 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 461
MspI CCGG 4 cut(s) 113, 117, 231, 863
MspR9I CCNGG 2 cut(s) 232, 989
Mva1269I GAATGC 2 cut(s) 1025, 1075
MvaI CCWGG 1 cut(s) 989
MwoI GCNNNNNNNGC 4 cut(s) 11, 42, 404, 503
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 232
NdeII GATC 2 cut(s) 187, 814
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 5 cut(s) 108, 198, 506, 1040, 1140
NlaIV GGNNCC 4 cut(s) 6, 314, 549, 810
NmuCI GTSAC 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PctI GAATGC 2 cut(s) 1025, 1075
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 4 cut(s) 38, 41, 44, 721
PleI GAGTC 2 cut(s) 421, 437
PpsI GAGTC 2 cut(s) 421, 437
PpuMI RGGWCCY 1 cut(s) 364
PshAI GACNNNNGTC 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 987
PspGI CCWGG 1 cut(s) 987
PspN4I GGNNCC 4 cut(s) 6, 314, 549, 810
PspPI GGNCC 4 cut(s) 265, 364, 698, 890
PspPPI RGGWCCY 1 cut(s) 364
RsaI GTAC 3 cut(s) 343, 846, 986
RsaNI GTAC 3 cut(s) 342, 845, 985
RseI CAYNNNNRTG 1 cut(s) 461
SatI GCNGC 4 cut(s) 37, 40, 43, 720
Sau3AI GATC 2 cut(s) 187, 814
Sau96I GGNCC 4 cut(s) 265, 364, 698, 890
SchI GAGTC 2 cut(s) 422, 437
ScrFI CCNGG 2 cut(s) 232, 989
SduI GDGCHC 3 cut(s) 811, 870, 1082
SfaNI GCATC 3 cut(s) 407, 476, 515
SinI GGWCC 4 cut(s) 265, 364, 698, 890
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 163, 368
SmoI CTYRAG 2 cut(s) 163, 368
Sse9I AATT 2 cut(s) 639, 750
SsiI CCGC 2 cut(s) 310, 823
SspMI CTAG 2 cut(s) 582, 1041
StyD4I CCNGG 2 cut(s) 230, 987
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 2 cut(s) 92, 635
TaiI ACGT 4 cut(s) 330, 456, 485, 1079
TaqI TCGA 3 cut(s) 130, 536, 1090
TasI AATT 2 cut(s) 639, 750
TfiI GAWTC 1 cut(s) 98
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 4 cut(s) 36, 39, 42, 719
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 2 cut(s) 1025, 1082
TspGWI ACGGA 1 cut(s) 690
VpaK11BI GGWCC 4 cut(s) 265, 364, 698, 890
XapI RAATTY 1 cut(s) 750
XceI RCATGY 1 cut(s) 108
XspI CTAG 2 cut(s) 582, 1041
ZraI GACGTC 2 cut(s) 328, 454
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.