Rorug07G0236700

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000675
Physical Location & Seq
Forward (+)
21730614 .. 21732691
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0236700.1

Sequence Viewer

Length: 1002 bp
ATGCAGGTCGACGATGTACTCGAGACGGTTGGATCGTTGCCATGGTGGTGTAATCGTGATGAGGGGGTTGGTGGCAGGGATCAGACCAAACTCGGCCGGGAAGTGACGCACGACGAGGGTTGGGAGCAGATGGTGGACTGGGCCCAAACCAGGCACAAGAGGAGAAGGACCGCGTTTTCTCACGGTGGTCCTTGGTTCTTCAGCGATTCCATGCTTGTTTTTTCCGACTACGACGACATTGGATCGGTGGAGGCAGTCTCCCTTCAATCCTTGGAACTCTGGGTAGCGGTGACGGGGCTCCGGGTTGCTATGCACAATGAGCGAGATCTAACTCTAATAGGGAATGATCTGGGGGCCTTGGTAAACGTATATGCGGCGGCGTTGAAGCGGAAGGATCTAGTCCAACGGATCCGGGTTGTCCATGATGTGCGTCAACGGATTTGGGCACGACGAACGTACTGCTTCTCGCCGGAGGTTTCTGTTCTGCTGGAATTCAGGTATGAGAGATGTCATGGCATATGCCAGGAGTGTGGGTGGTTTGGTCATGGTGGTGGTGCTTGTGACAAGGGGCTGTTGTCGGTGCCATTGTCGGTGTCACTGGTGCCGGATGTGGGGGCGCTGCAGCAGGACCCAGGATTGGGCTCCCTGGCCTTGGAGAAGGCGGCAGAGGAGGTGGCGAAGATTGGGTCAGAGGAGGAACCGGCGGCTGCTGCAAGTTTGGAGGCCCTGGCTTTTTCGGCGGGCAACCCTTATTTCAAATTAGGGTTGACCGCGGGGCTAGGGTTGACTGGGCTAAGCAGTGGGCTGGGTAAGGATGTTGGGCCCAAATCTAGAGATGGGCTCGTTTATGAGGCTACTGGGCTGGTGGAGAAGGACATGGATGGGCCTGCTTCTGTGTTAGCACATGGGCCTGATGCTGCAAACTCAAAAGTTTTGGGGTGCGCAAATGGTGCCATGTTGAATGGCGTATGGAGAAGAGGCCAAAACCTAGCTTGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

333

Amino Acids

36.09

Weight (kDa)

5.44

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 142 - 189 4.7e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 943
AccB1I GGYRCC 3 cut(s) 580, 601, 950
AccI GTMKAC 1 cut(s) 9
AccII CGCG 2 cut(s) 173, 773
AclWI GGATC 6 cut(s) 40, 87, 250, 402, 403, 416
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 2 cut(s) 18, 458
AfiI CCNNNNNNNGG 5 cut(s) 150, 611, 637, 638, 652
AgsI TTSAA 4 cut(s) 266, 385, 757, 961
AjnI CCWGG 5 cut(s) 149, 522, 631, 645, 726
AluBI AGCT 1 cut(s) 992
AluI AGCT 1 cut(s) 992
Alw26I GTCTC 2 cut(s) 17, 262
AlwI GGATC 6 cut(s) 40, 87, 250, 402, 403, 416
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 9 cut(s) 94, 141, 354, 648, 723, 821, 884, 908, 979
ApaI GGGCCC 2 cut(s) 145, 825
ApeKI GCWGC 5 cut(s) 619, 622, 707, 710, 917
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AspLEI GCGC 2 cut(s) 619, 944
AsuC2I CCSGG 3 cut(s) 98, 302, 413
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 3 cut(s) 168, 188, 628
BaeGI GKGCMC 3 cut(s) 145, 448, 825
BamHI GGATCC 1 cut(s) 408
BanI GGYRCC 3 cut(s) 580, 601, 950
BanII GRGCYC 5 cut(s) 145, 300, 644, 825, 843
BbvI GCAGC 5 cut(s) 606, 634, 694, 697, 904
BccI CCATC 3 cut(s) 124, 830, 875
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 5 cut(s) 151, 524, 633, 647, 728
BcnI CCSGG 3 cut(s) 98, 302, 413
BcoDI GTCTC 2 cut(s) 17, 262
BfaI CTAG 4 cut(s) 398, 779, 831, 989
BfmI CTRYAG 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 620
BglII AGATCT 1 cut(s) 325
BisI GCNGC 9 cut(s) 375, 378, 620, 623, 663, 705, 708, 711, 918
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 9 cut(s) 376, 379, 621, 624, 664, 706, 709, 712, 919
Bme1390I CCNGG 8 cut(s) 98, 151, 302, 413, 524, 633, 647, 728
Bme18I GGWCC 3 cut(s) 168, 188, 628
BmeT110I CYCGRG 1 cut(s) 20
BmrFI CCNGG 8 cut(s) 98, 151, 302, 413, 524, 633, 647, 728
BmrI ACTGGG 3 cut(s) 148, 798, 867
BmsI GCATC 1 cut(s) 904
BmuI ACTGGG 3 cut(s) 148, 798, 867
BplI GAGNNNNNCTC 4 cut(s) 242, 274, 825, 857
Bpu1102I GCTNAGC 1 cut(s) 794
BpuMI CCSGG 3 cut(s) 98, 302, 413
BsaJI CCNNGG 9 cut(s) 41, 191, 270, 357, 631, 645, 651, 726, 771
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 611, 637, 638, 652
Bse118I RCCGGY 1 cut(s) 700
Bse1I ACTGG 4 cut(s) 143, 603, 793, 862
BseBI CCWGG 5 cut(s) 151, 524, 633, 647, 728
BseDI CCNNGG 9 cut(s) 41, 191, 270, 357, 631, 645, 651, 726, 771
BseGI GGATG 3 cut(s) 613, 820, 886
BseLI CCNNNNNNNGG 5 cut(s) 150, 611, 637, 638, 652
BseNI ACTGG 4 cut(s) 143, 603, 793, 862
BseRI GAGGAG 3 cut(s) 175, 683, 707
BseSI GKGCMC 3 cut(s) 145, 448, 825
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 5 cut(s) 606, 634, 694, 697, 904
BseYI CCCAGC 1 cut(s) 805
Bsh1236I CGCG 2 cut(s) 173, 773
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 9 cut(s) 96, 143, 356, 650, 725, 823, 886, 910, 981
BshNI GGYRCC 3 cut(s) 580, 601, 950
BsiEI CGRYCG 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 6 cut(s) 97, 301, 412, 470, 605, 701
BslI CCNNNNNNNGG 5 cut(s) 150, 611, 637, 638, 652
BsmAI GTCTC 2 cut(s) 17, 262
BsmBI CGTCTC 1 cut(s) 17
BsnI GGCC 9 cut(s) 96, 143, 356, 650, 725, 823, 886, 910, 981
BsoBI CYCGRG 1 cut(s) 20
Bsp120I GGGCCC 2 cut(s) 141, 821
Bsp1286I GDGCHC 6 cut(s) 145, 300, 448, 644, 825, 843
Bsp143I GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
Bsp1720I GCTNAGC 1 cut(s) 794
Bsp19I CCATGG 1 cut(s) 41
BspANI GGCC 9 cut(s) 96, 143, 356, 650, 725, 823, 886, 910, 981
BspFNI CGCG 2 cut(s) 173, 773
BspMAI CTGCAG 1 cut(s) 624
BspPI GGATC 6 cut(s) 40, 87, 250, 402, 403, 416
BspT107I GGYRCC 3 cut(s) 580, 601, 950
BsrFI RCCGGY 1 cut(s) 700
BsrI ACTGG 4 cut(s) 143, 603, 793, 862
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 9 cut(s) 41, 191, 270, 357, 631, 645, 651, 726, 771
BssMI GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
BssT1I CCWWGG 5 cut(s) 41, 191, 270, 357, 651
Bst2UI CCWGG 5 cut(s) 151, 524, 633, 647, 728
Bst4CI ACNGT 2 cut(s) 28, 185
Bst6I CTCTTC 1 cut(s) 970
BstAPI GCANNNNNTGC 1 cut(s) 950
BstC8I GCNNGC 2 cut(s) 742, 888
BstDEI CTNAG 1 cut(s) 794
BstDSI CCRYGG 2 cut(s) 41, 771
BstF5I GGATG 3 cut(s) 613, 820, 886
BstFNI CGCG 2 cut(s) 173, 773
BstH2I RGCGCY 1 cut(s) 620
BstHHI GCGC 2 cut(s) 619, 944
BstKTI GATC 7 cut(s) 35, 82, 245, 328, 349, 397, 411
BstMAI GTCTC 2 cut(s) 17, 262
BstMBI GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 319, 710, 737, 950
BstNI CCWGG 5 cut(s) 151, 524, 633, 647, 728
BstSCI CCNGG 8 cut(s) 96, 149, 300, 411, 522, 631, 645, 726
BstSFI CTRYAG 1 cut(s) 620
BstSLI GKGCMC 3 cut(s) 145, 448, 825
BstUI CGCG 2 cut(s) 173, 773
BstV1I GCAGC 5 cut(s) 606, 634, 694, 697, 904
BstX2I RGATCY 3 cut(s) 325, 394, 408
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 3 cut(s) 325, 394, 408
BstZI CGGCCG 1 cut(s) 94
BsuRI GGCC 9 cut(s) 96, 143, 356, 650, 725, 823, 886, 910, 981
BtgI CCRYGG 2 cut(s) 41, 771
BtsCI GGATG 3 cut(s) 613, 820, 886
BtsI GCAGTG 1 cut(s) 805
BtsIMutI CAGTG 2 cut(s) 596, 805
Cac8I GCNNGC 2 cut(s) 742, 888
CfoI GCGC 2 cut(s) 619, 944
Cfr10I RCCGGY 1 cut(s) 700
Cfr42I CCGCGG 1 cut(s) 774
CseI GACGC 2 cut(s) 115, 419
Csp6I GTAC 2 cut(s) 17, 457
CviAII CATG 8 cut(s) 42, 211, 422, 512, 545, 877, 905, 955
CviQI GTAC 2 cut(s) 17, 457
DdeI CTNAG 1 cut(s) 794
DpnI GATC 7 cut(s) 34, 81, 244, 327, 348, 396, 410
DpnII GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
EaeI YGGCCR 1 cut(s) 94
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 970
EarI CTCTTC 1 cut(s) 970
EclXI CGGCCG 1 cut(s) 94
Eco130I CCWWGG 5 cut(s) 41, 191, 270, 357, 651
Eco24I GRGCYC 5 cut(s) 145, 300, 644, 825, 843
Eco47I GGWCC 3 cut(s) 168, 188, 628
Eco52I CGGCCG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 20
EcoO109I RGGNCCY 3 cut(s) 354, 628, 724
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 5 cut(s) 149, 522, 631, 645, 726
EcoT14I CCWWGG 5 cut(s) 41, 191, 270, 357, 651
EcoT38I GRGCYC 5 cut(s) 145, 300, 644, 825, 843
ErhI CCWWGG 5 cut(s) 41, 191, 270, 357, 651
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 8 cut(s) 45, 214, 425, 515, 548, 880, 908, 958
FatI CATG 8 cut(s) 41, 210, 421, 511, 544, 876, 904, 954
FauI CCCGC 2 cut(s) 733, 766
FauNDI CATATG 1 cut(s) 518
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 9 cut(s) 375, 378, 620, 623, 663, 705, 708, 711, 918
FokI GGATG 3 cut(s) 620, 827, 893
FriOI GRGCYC 5 cut(s) 145, 300, 644, 825, 843
Fsp4HI GCNGC 9 cut(s) 375, 378, 620, 623, 663, 705, 708, 711, 918
FspBI CTAG 4 cut(s) 398, 779, 831, 989
FspI TGCGCA 1 cut(s) 943
GlaI GCGC 2 cut(s) 618, 943
GluI GCNGC 9 cut(s) 375, 378, 620, 623, 663, 705, 708, 711, 918
GsaI CCCAGC 1 cut(s) 809
HaeII RGCGCY 1 cut(s) 620
HaeIII GGCC 9 cut(s) 96, 143, 356, 650, 725, 823, 886, 910, 981
HapII CCGG 6 cut(s) 97, 301, 412, 470, 605, 701
HgaI GACGC 2 cut(s) 115, 419
HhaI GCGC 2 cut(s) 619, 944
Hin1II CATG 8 cut(s) 45, 214, 425, 515, 548, 880, 908, 958
Hin6I GCGC 2 cut(s) 617, 942
HinP1I GCGC 2 cut(s) 617, 942
HincII GTYRAC 4 cut(s) 10, 434, 768, 786
HindII GTYRAC 4 cut(s) 10, 434, 768, 786
HinfI GANTC 1 cut(s) 206
HpaII CCGG 6 cut(s) 97, 301, 412, 470, 605, 701
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 6 cut(s) 10, 136, 364, 434, 768, 786
Hpy188I TCNGA 3 cut(s) 84, 226, 691
Hpy188III TCNNGA 3 cut(s) 22, 56, 831
Hpy8I GTNNAC 6 cut(s) 10, 136, 364, 434, 768, 786
Hpy99I CGWCG 4 cut(s) 14, 116, 236, 453
HpyAV CCTTC 5 cut(s) 159, 272, 385, 652, 865
HpyCH4III ACNGT 2 cut(s) 28, 185
HpyCH4IV ACGT 2 cut(s) 366, 455
HpyCH4V TGCA 5 cut(s) 4, 313, 622, 713, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 319, 710, 737, 950
HpyF3I CTNAG 1 cut(s) 794
HpySE526I ACGT 2 cut(s) 366, 455
Hsp92II CATG 8 cut(s) 45, 214, 425, 515, 548, 880, 908, 958
HspAI GCGC 2 cut(s) 617, 942
KspI CCGCGG 1 cut(s) 774
Kzo9I GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
LmnI GCTCC 3 cut(s) 124, 303, 647
Lsp1109I GCAGC 5 cut(s) 606, 634, 694, 697, 904
LweI GCATC 1 cut(s) 904
MaeI CTAG 4 cut(s) 398, 779, 831, 989
MaeII ACGT 2 cut(s) 366, 455
MaeIII GTNAC 4 cut(s) 103, 289, 560, 594
MalI GATC 7 cut(s) 34, 81, 244, 327, 348, 396, 410
MboI GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
MboII GAAGA 3 cut(s) 190, 691, 987
MflI RGATCY 3 cut(s) 325, 394, 408
MhlI GDGCHC 6 cut(s) 145, 300, 448, 644, 825, 843
MluCI AATT 2 cut(s) 491, 758
MmeI TCCRAC 3 cut(s) 10, 249, 427
MslI CAYNNNNRTG 2 cut(s) 46, 549
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 6 cut(s) 97, 301, 412, 470, 605, 701
MspR9I CCNGG 8 cut(s) 98, 151, 302, 413, 524, 633, 647, 728
MvaI CCWGG 5 cut(s) 151, 524, 633, 647, 728
MvnI CGCG 2 cut(s) 173, 773
MwoI GCNNNNNNNGC 4 cut(s) 319, 710, 737, 950
NciI CCSGG 3 cut(s) 98, 302, 413
NcoI CCATGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 518
NdeII GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
NlaIII CATG 8 cut(s) 45, 214, 425, 515, 548, 880, 908, 958
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 4 cut(s) 103, 289, 560, 594
NsbI TGCGCA 1 cut(s) 943
PaeR7I CTCGAG 1 cut(s) 20
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 32
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 9 cut(s) 376, 379, 621, 624, 664, 706, 709, 712, 919
PpuMI RGGWCCY 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 5 cut(s) 149, 522, 631, 645, 726
PspFI CCCAGC 1 cut(s) 805
PspGI CCWGG 5 cut(s) 149, 522, 631, 645, 726
PspOMI GGGCCC 2 cut(s) 141, 821
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 1 cut(s) 624
PsuI RGATCY 3 cut(s) 325, 394, 408
RsaI GTAC 2 cut(s) 18, 458
RsaNI GTAC 2 cut(s) 17, 457
RseI CAYNNNNRTG 2 cut(s) 46, 549
SacII CCGCGG 1 cut(s) 774
SalI GTCGAC 1 cut(s) 8
SatI GCNGC 9 cut(s) 375, 378, 620, 623, 663, 705, 708, 711, 918
Sau3AI GATC 7 cut(s) 32, 79, 242, 325, 346, 394, 408
ScrFI CCNGG 8 cut(s) 98, 151, 302, 413, 524, 633, 647, 728
SduI GDGCHC 6 cut(s) 145, 300, 448, 644, 825, 843
SetI ASST 8 cut(s) 9, 369, 458, 477, 500, 675, 990, 994
SfaNI GCATC 1 cut(s) 904
SfcI CTRYAG 1 cut(s) 620
Sfr274I CTCGAG 1 cut(s) 20
Sfr303I CCGCGG 1 cut(s) 774
SgrBI CCGCGG 1 cut(s) 774
SinI GGWCC 3 cut(s) 168, 188, 628
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 46, 549
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 2 cut(s) 491, 758
SspMI CTAG 4 cut(s) 398, 779, 831, 989
StyD4I CCNGG 8 cut(s) 96, 149, 300, 411, 522, 631, 645, 726
StyI CCWWGG 5 cut(s) 41, 191, 270, 357, 651
TaaI ACNGT 2 cut(s) 28, 185
TaiI ACGT 2 cut(s) 369, 458
TaqI TCGA 2 cut(s) 9, 21
TasI AATT 2 cut(s) 491, 758
TatI WGTACW 1 cut(s) 16
TauI GCSGC 4 cut(s) 377, 380, 665, 707
TfiI GAWTC 1 cut(s) 206
TscAI CASTG 2 cut(s) 603, 805
TseFI GTSAC 4 cut(s) 103, 289, 560, 594
TseI GCWGC 5 cut(s) 619, 622, 707, 710, 917
Tsp45I GTSAC 4 cut(s) 103, 289, 560, 594
TspGWI ACGGA 2 cut(s) 421, 451
TspRI CASTG 2 cut(s) 603, 805
VpaK11BI GGWCC 3 cut(s) 168, 188, 628
XapI RAATTY 1 cut(s) 491
XbaI TCTAGA 1 cut(s) 830
XhoI CTCGAG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 4 cut(s) 398, 779, 831, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.