Prupe.5G119300_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000675
Physical Location & Seq
Reverse (-)
11984035 .. 11985946
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G119300.1

Sequence Viewer

Length: 1134 bp
ATGGCTCACTCATATCGTATGGCTACCTTAGAAATCTTCACCTTCTTCTTCTTCTTTCCTCTTGTATTAGCAAGCGCTACCACCTGCGGTGGATCGACATGCACTGCCGACGGCCCATTGGTTCGATTCCCTTTCCTGCTCAGAGACCACCAAGCCTCAAGTTGTGGGTACCCAGCGTTTAATCTCTCGTGCAACAACAAAAACCAAACCGTTCTCACTCTGCCATCTTCTTCCGGGGACTTCATCGTCCAAAGCATCGACTATATAGACCAAACCCTAACGATCAATGACCCCGATAACTGCCTCCTAAGAAGGTTCCTCCACCATGACATCAATCTTAAAAATTCACTCTTTTCACACGCAAACGCCCCTGAAAACTACACGTTCGTTGGCTGCTCGTCCCAAAAAGCATTTTGGCCATGGAATTCAGCACCCGTAATCCCTTGCCTCACCAAGTACCACTACAAGGTCATATACGTTGTACAAACCAGTTCGCTTTTGCATCCGGATTGGATTCCGCCGGTTCCGAAAATTTTGCCGGCTGGTTGCTCTAAAATTTCGACTGCTTTGGTTCCATTTTTATTTGATTCGGAGTATCTTGGTGTTCAGTTGACTTGGTACGTGCCTAATTGTGGTTCTTGTGAAGCTACAGGTCGTGTTTGTGGGTGGGAAAATGGTACTACAACTTCTCAAATTCGGTGCTTTGGTTCTTCCGGCTTTTCAAGTCTGCCAAGAGCTGCAAGGTATGGCATAGTGATAGCCGTGGGAATTCCAGGGCTACTGTGCATCATAGGGCTTGCAGTTTATGTTTGTAACAAGACAAGGGTTCCTGGTCAGGTTCACCAGCCCACCATCACACAAGTGTTATCCATACCCGATCGACAACCTTCGACAGTCAGAATTGGCCTTGATGATCCGACCATCGAATCATATCCCGAGATTCAACTTGGTGAGAGCTGGGAATTGCCAAAACTCAATGACAACACTTGCCCAATATGTTTGTCTGAGTACCAGCCCAAAGAAACACTAAGGACCATACCAGAATGCGGCCATTATTTCCATGCTAATTGCATAGATGAGTGGCTTAGAATGAATGCAACTTGCCCTGTTTGTAGAAACCCACAAAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

378

Amino Acids

41.92

Weight (kDa)

6.77

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 3 cut(s) 87, 518, 1047
AclWI GGATC 2 cut(s) 100, 908
AcoI YGGCCR 2 cut(s) 416, 1048
AcsI RAATTY 6 cut(s) 343, 424, 531, 555, 693, 768
AfaI GTAC 6 cut(s) 170, 458, 483, 620, 679, 1010
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 466, 632, 1046
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 723, 944
AjnI CCWGG 2 cut(s) 772, 829
AleI CACNNNNGTG 1 cut(s) 860
AluBI AGCT 3 cut(s) 647, 737, 957
AluI AGCT 3 cut(s) 647, 737, 957
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 100, 908
Ama87I CYCGRG 1 cut(s) 935
Aor13HI TCCGGA 1 cut(s) 505
Aor51HI AGCGCT 1 cut(s) 76
AoxI GGCC 4 cut(s) 112, 416, 904, 1048
ApeKI GCWGC 2 cut(s) 393, 737
ApoI RAATTY 6 cut(s) 343, 424, 531, 555, 693, 768
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 113, 1032
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 4 cut(s) 31, 442, 833, 962
AvaI CYCGRG 1 cut(s) 935
AvaII GGWCC 1 cut(s) 1032
BalI TGGCCA 1 cut(s) 418
BanI GGYRCC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 670, 702
BauI CACGAG 1 cut(s) 187
BbvI GCAGC 2 cut(s) 380, 724
BccI CCATC 3 cut(s) 232, 860, 929
BceAI ACGGC 2 cut(s) 127, 746
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciT130I CCWGG 2 cut(s) 774, 831
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 92
BisI GCNGC 3 cut(s) 394, 738, 1048
BlsI GCNGC 3 cut(s) 395, 739, 1049
Bme1390I CCNGG 3 cut(s) 235, 774, 831
Bme18I GGWCC 1 cut(s) 1032
BmeT110I CYCGRG 1 cut(s) 935
BmgT120I GGNCC 2 cut(s) 113, 1032
BmiI GGNNCC 5 cut(s) 170, 317, 525, 573, 828
BmrFI CCNGG 3 cut(s) 235, 774, 831
BmsI GCATC 3 cut(s) 264, 511, 795
BpuEI CTTGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 622
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 234, 419, 762, 773
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 632, 1046
Bse118I RCCGGY 2 cut(s) 520, 538
Bse1I ACTGG 1 cut(s) 489
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 2 cut(s) 774, 831
BseDI CCNNGG 4 cut(s) 234, 419, 762, 773
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 3 cut(s) 466, 632, 1046
BseMII CTCAG 2 cut(s) 154, 996
BseNI ACTGG 1 cut(s) 489
BseXI GCAGC 2 cut(s) 380, 724
BseYI CCCAGC 2 cut(s) 172, 957
Bsh1285I CGRYCG 1 cut(s) 880
BshFI GGCC 4 cut(s) 114, 418, 906, 1050
BshNI GGYRCC 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 935
BsiSI CCGG 5 cut(s) 234, 506, 521, 539, 714
BslFI GGGAC 2 cut(s) 251, 385
BslI CCNNNNNNNGG 3 cut(s) 466, 632, 1046
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 251, 385
BsmI GAATGC 2 cut(s) 1049, 1099
BsnI GGCC 4 cut(s) 114, 418, 906, 1050
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 935
Bsp13I TCCGGA 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 4 cut(s) 92, 282, 877, 913
Bsp19I CCATGG 1 cut(s) 419
BspACI CCGC 3 cut(s) 87, 518, 1047
BspANI GGCC 4 cut(s) 114, 418, 906, 1050
BspCNI CTCAG 2 cut(s) 153, 997
BspEI TCCGGA 1 cut(s) 505
BspLI GGNNCC 5 cut(s) 170, 317, 525, 573, 828
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 100, 908
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 138
BsrFI RCCGGY 2 cut(s) 520, 538
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 1 cut(s) 489
BssAI RCCGGY 2 cut(s) 520, 538
BssECI CCNNGG 4 cut(s) 234, 419, 762, 773
BssMI GATC 4 cut(s) 92, 282, 877, 913
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 774, 831
Bst4CI ACNGT 3 cut(s) 211, 783, 895
BstAUI TGTACA 1 cut(s) 481
BstBAI YACGTR 1 cut(s) 622
BstC8I GCNNGC 3 cut(s) 73, 540, 798
BstDEI CTNAG 6 cut(s) 28, 140, 308, 1005, 1028, 1085
BstDSI CCRYGG 2 cut(s) 419, 762
BstF5I GGATG 1 cut(s) 502
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 95, 285, 880, 916
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 92, 282, 877, 913
BstMCI CGRYCG 1 cut(s) 880
BstNI CCWGG 2 cut(s) 774, 831
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 233, 772, 829
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 380, 724
BsuRI GGCC 4 cut(s) 114, 418, 906, 1050
BtgI CCRYGG 2 cut(s) 419, 762
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 73, 540, 798
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 2 cut(s) 520, 538
Cfr13I GGNCC 2 cut(s) 113, 1032
Csp6I GTAC 6 cut(s) 169, 457, 482, 619, 678, 1009
CviAII CATG 4 cut(s) 99, 326, 420, 1061
CviQI GTAC 6 cut(s) 169, 457, 482, 619, 678, 1009
DdeI CTNAG 6 cut(s) 28, 140, 308, 1005, 1028, 1085
DpnI GATC 4 cut(s) 94, 284, 879, 915
DpnII GATC 4 cut(s) 92, 282, 877, 913
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 2 cut(s) 416, 1048
EciI GGCGGA 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 419
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 1032
Eco47III AGCGCT 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 935
EcoRI GAATTC 2 cut(s) 424, 768
EcoRII CCWGG 2 cut(s) 772, 829
EcoT14I CCWWGG 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 4 cut(s) 102, 329, 423, 1064
FaqI GGGAC 2 cut(s) 251, 385
FatI CATG 4 cut(s) 98, 325, 419, 1060
Fnu4HI GCNGC 3 cut(s) 394, 738, 1048
FokI GGATG 1 cut(s) 489
Fsp4HI GCNGC 3 cut(s) 394, 738, 1048
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 394, 738, 1048
GsaI CCCAGC 2 cut(s) 176, 961
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 4 cut(s) 114, 418, 906, 1050
HapII CCGG 5 cut(s) 234, 506, 521, 539, 714
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 102, 329, 423, 1064
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 5 cut(s) 126, 514, 587, 926, 940
HpaII CCGG 5 cut(s) 234, 506, 521, 539, 714
HphI GGTGA 4 cut(s) 31, 442, 833, 962
Hpy166II GTNNAC 2 cut(s) 612, 841
Hpy188I TCNGA 6 cut(s) 143, 528, 592, 899, 918, 1006
Hpy188III TCNNGA 2 cut(s) 506, 935
Hpy8I GTNNAC 2 cut(s) 612, 841
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 52, 306, 897
HpyCH4III ACNGT 3 cut(s) 211, 783, 895
HpyCH4IV ACGT 3 cut(s) 383, 477, 621
HpyCH4V TGCA 8 cut(s) 102, 192, 502, 740, 786, 800, 1071, 1097
HpyF3I CTNAG 6 cut(s) 28, 140, 308, 1005, 1028, 1085
HpySE526I ACGT 3 cut(s) 383, 477, 621
Hsp92II CATG 4 cut(s) 102, 329, 423, 1064
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 505
KpnI GGTACC 1 cut(s) 172
KroI GCCGGC 1 cut(s) 538
KroNI GCCGGC 1 cut(s) 540
Kzo9I GATC 4 cut(s) 92, 282, 877, 913
Lsp1109I GCAGC 2 cut(s) 380, 724
LweI GCATC 3 cut(s) 264, 511, 795
MaeII ACGT 3 cut(s) 383, 477, 621
MaeIII GTNAC 1 cut(s) 812
MalI GATC 4 cut(s) 94, 284, 879, 915
MboI GATC 4 cut(s) 92, 282, 877, 913
MboII GAAGA 7 cut(s) 28, 37, 40, 43, 219, 222, 702
MlsI TGGCCA 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 941
MnlI CCTC 5 cut(s) 69, 166, 314, 329, 458
Mox20I TGGCCA 1 cut(s) 418
MroI TCCGGA 1 cut(s) 505
MroNI GCCGGC 1 cut(s) 538
MscI TGGCCA 1 cut(s) 418
MseI TTAA 2 cut(s) 180, 339
MslI CAYNNNNRTG 1 cut(s) 860
Msp20I TGGCCA 1 cut(s) 418
MspI CCGG 5 cut(s) 234, 506, 521, 539, 714
MspR9I CCNGG 3 cut(s) 235, 774, 831
Mva1269I GAATGC 2 cut(s) 1049, 1099
MvaI CCWGG 2 cut(s) 774, 831
NaeI GCCGGC 1 cut(s) 540
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 419
NdeII GATC 4 cut(s) 92, 282, 877, 913
NgoMIV GCCGGC 1 cut(s) 538
NlaIII CATG 4 cut(s) 102, 329, 423, 1064
NlaIV GGNNCC 5 cut(s) 170, 317, 525, 573, 828
NspI RCATGY 1 cut(s) 102
OliI CACNNNNGTG 1 cut(s) 860
PaqCI CACCTGC 1 cut(s) 92
PctI GAATGC 2 cut(s) 1049, 1099
PdiI GCCGGC 1 cut(s) 540
PfeI GAWTC 5 cut(s) 126, 514, 587, 926, 940
PkrI GCNGC 3 cut(s) 395, 739, 1049
Ple19I CGATCG 1 cut(s) 880
Ppu21I YACGTR 1 cut(s) 622
Psp6I CCWGG 2 cut(s) 772, 829
PspFI CCCAGC 2 cut(s) 172, 957
PspGI CCWGG 2 cut(s) 772, 829
PspN4I GGNNCC 5 cut(s) 170, 317, 525, 573, 828
PspPI GGNCC 2 cut(s) 113, 1032
PvuI CGATCG 1 cut(s) 880
RsaI GTAC 6 cut(s) 170, 458, 483, 620, 679, 1010
RsaNI GTAC 6 cut(s) 169, 457, 482, 619, 678, 1009
RseI CAYNNNNRTG 1 cut(s) 860
SaqAI TTAA 2 cut(s) 180, 339
SatI GCNGC 3 cut(s) 394, 738, 1048
Sau3AI GATC 4 cut(s) 92, 282, 877, 913
Sau96I GGNCC 2 cut(s) 113, 1032
ScrFI CCNGG 3 cut(s) 235, 774, 831
SfaNI GCATC 3 cut(s) 264, 511, 795
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 1032
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SsiI CCGC 3 cut(s) 87, 518, 1047
StyD4I CCNGG 3 cut(s) 233, 772, 829
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 3 cut(s) 211, 783, 895
TaiI ACGT 3 cut(s) 386, 480, 624
TaqI TCGA 7 cut(s) 95, 124, 258, 560, 880, 890, 924
TatI WGTACW 1 cut(s) 481
TauI GCSGC 1 cut(s) 1050
TfiI GAWTC 5 cut(s) 126, 514, 587, 926, 940
Tru1I TTAA 2 cut(s) 180, 339
Tru9I TTAA 2 cut(s) 180, 339
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 393, 737
TspDTI ATGAA 2 cut(s) 232, 1106
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 1032
XapI RAATTY 6 cut(s) 343, 424, 531, 555, 693, 768
XceI RCATGY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.