Rh7BG146300

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000675
Physical Location & Seq
Forward (+)
10851798 .. 10859196
7399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG146300.1

Sequence Viewer

Length: 1155 bp
ATGGCTATCTTGGAACTCTTTAGCTTCTTCTTATTCATCTTTTTCCTTCCTCACATAGCATCCGCCTCATGCAGTGCAGCAAAATGCACCCACAGAGGGCCCCGGGTTCGATTCCCATTCTGGCTAACAAACCGCCAAGACTCGCGCTGTGGGTATCCAAAGTTTGGTCTCATATGCGATAGTGAAAGGAAGCAAACCGTTGTCACTCTCCCGTCTACGTCGGGAGACTTCTTCGTCGACAGCATCAACTACAGGGACCAAATGGTATCGATCATCGATGCCACCGGGAACGGCTGCCTCATCAAGCGGTTCCTGGACCAGGAAATCAGCCTCGTAGATTCAGCCTTCTTATTTGCGAATGGTAATCAGTACAAGTTCTTCAGTTGCTCGCCTAAAGCAGAGGAAGTACTAGCTTATTATCCAACCATCTCTTGCCTCAGCAGTGACGACAGCAAGGTCATTGCTGTGCCATCAATATCGTCTGGGCCACCAATAGTACCGTCTGATCTTTGCTCTGTGATGTCGGAAGCTTTCGTTCCGGTGGACTCCACTCCATTTCTTCCACCATATGTATCTCAGTGGGAAAATATTAACTTTGGTTTTCGGTTGGCGTGGGCTGAGCCTGATTGTGGTTACTGTGAACTAACTCATAGAGCTTGTCGGTTTGAGAATGCTACAAGTTGGCAGATTGGTTGCTCTGGTCGTAGAGGTCTCTCAAATGCTGCAAGAACTGGCTTAATTATAGGCCTGGGAATCCCGGGGCTTGTGGGCATCTCTGGGCTTGCAATGCTTATAACGGACAGGATGAGGACCCGTCGTCAGGGCAACCACACAACCATGGAACTATCCACGGTAACTAATGAACAATCTCCAGTAGTCACAGCAGTGGCCGGCCTTGATGCTGCGACCATCGAATCGTATCCTAAGACTCAACTTGGTGAGAGCGTGGATTTACCTAGCCCAAATGATAAAACTTGCTCTATATGTTTGGCCGAGTACCAGCCCAAGGAATCTCTCAGGGGTATACCTGTCATTGCTGTGCCATCATCGTCGTCGCAGCAAGCTGAGAGGCCTGCACCATCGTTTTCTGATGATATTTGTTATGAGATTGCGGAAGCGATGATTAATGATTCCAATCGAACCAAGAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

384

Amino Acids

42.05

Weight (kDa)

5.39

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 24 - 93 5.8e-15 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AasI GACNNNNNNGTC 2 cut(s) 233, 455
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 3 cut(s) 215, 237, 1024
AccII CGCG 1 cut(s) 145
AciI CCGC 4 cut(s) 63, 133, 307, 1112
AcoI YGGCCR 2 cut(s) 888, 990
AcuI CTGAAG 1 cut(s) 364
AfaI GTAC 4 cut(s) 371, 408, 498, 998
AfiI CCNNNNNNNGG 6 cut(s) 96, 164, 319, 629, 820, 1006
AhdI GACNNNNNGTC 1 cut(s) 816
AjnI CCWGG 3 cut(s) 312, 318, 747
AleI CACNNNNGTG 1 cut(s) 884
AluBI AGCT 5 cut(s) 24, 413, 530, 656, 1064
AluI AGCT 5 cut(s) 24, 413, 530, 656, 1064
Alw26I GTCTC 3 cut(s) 173, 219, 716
Ama87I CYCGRG 2 cut(s) 102, 757
AoxI GGCC 7 cut(s) 98, 485, 745, 888, 892, 990, 1070
ApaI GGGCCC 1 cut(s) 102
ApeKI GCWGC 5 cut(s) 77, 294, 722, 902, 1057
AseI ATTAAT 1 cut(s) 1125
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 6 cut(s) 98, 99, 256, 316, 485, 810
AsuC2I CCSGG 5 cut(s) 103, 104, 286, 758, 759
AsuHPI GGTGA 1 cut(s) 950
AvaI CYCGRG 2 cut(s) 102, 757
AvaII GGWCC 3 cut(s) 256, 316, 810
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 5 cut(s) 89, 281, 709, 889, 1069
BccI CCATC 5 cut(s) 434, 478, 917, 1051, 1087
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 3 cut(s) 314, 320, 749
BciVI GTATCC 2 cut(s) 165, 930
BcnI CCSGG 5 cut(s) 103, 104, 286, 758, 759
BcoDI GTCTC 3 cut(s) 173, 219, 716
BfaI CTAG 2 cut(s) 410, 957
BfmI CTRYAG 1 cut(s) 250
BfuI GTATCC 2 cut(s) 165, 930
BisI GCNGC 5 cut(s) 78, 295, 723, 903, 1058
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 5 cut(s) 79, 296, 724, 904, 1059
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 8 cut(s) 103, 104, 286, 314, 320, 749, 758, 759
Bme18I GGWCC 3 cut(s) 256, 316, 810
BmeRI GACNNNNNGTC 1 cut(s) 816
BmeT110I CYCGRG 2 cut(s) 102, 757
BmgT120I GGNCC 6 cut(s) 98, 99, 256, 316, 485, 810
BmiI GGNNCC 5 cut(s) 100, 101, 257, 311, 812
BmrFI CCNGG 8 cut(s) 103, 104, 286, 314, 320, 749, 758, 759
BmsI GCATC 5 cut(s) 68, 252, 268, 780, 889
BpmI CTGGAG 1 cut(s) 855
Bpu10I CCTNAGC 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 618
BpuMI CCSGG 5 cut(s) 103, 104, 286, 758, 759
Bsa29I ATCGAT 2 cut(s) 269, 276
BsaBI GATNNNNATC 1 cut(s) 1134
BsaI GGTCTC 2 cut(s) 173, 716
BsaJI CCNNGG 8 cut(s) 101, 102, 748, 757, 758, 837, 849, 1005
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 6 cut(s) 96, 164, 319, 629, 820, 1006
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 2 cut(s) 736, 872
Bse3DI GCAATG 3 cut(s) 459, 792, 1032
Bse8I GATNNNNATC 1 cut(s) 1134
BseBI CCWGG 3 cut(s) 314, 320, 749
BseCI ATCGAT 2 cut(s) 269, 276
BseDI CCNNGG 8 cut(s) 101, 102, 748, 757, 758, 837, 849, 1005
BseGI GGATG 2 cut(s) 59, 810
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 6 cut(s) 96, 164, 319, 629, 820, 1006
BseMI GCAATG 3 cut(s) 459, 792, 1032
BseMII CTCAG 5 cut(s) 451, 590, 609, 1030, 1056
BseNI ACTGG 2 cut(s) 736, 872
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 5 cut(s) 89, 281, 709, 889, 1069
BsgI GTGCAG 2 cut(s) 96, 1059
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 7 cut(s) 100, 487, 747, 890, 894, 992, 1072
BshVI ATCGAT 2 cut(s) 269, 276
BsiHKCI CYCGRG 2 cut(s) 102, 757
BsiSI CCGG 5 cut(s) 103, 285, 539, 758, 891
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 6 cut(s) 96, 164, 319, 629, 820, 1006
BsmAI GTCTC 3 cut(s) 173, 219, 716
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 7 cut(s) 100, 487, 747, 890, 894, 992, 1072
Bso31I GGTCTC 2 cut(s) 173, 716
BsoBI CYCGRG 2 cut(s) 102, 757
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 270, 505
Bsp1720I GCTNAGC 1 cut(s) 618
Bsp19I CCATGG 1 cut(s) 837
BspACI CCGC 4 cut(s) 63, 133, 307, 1112
BspANI GGCC 7 cut(s) 100, 487, 747, 890, 894, 992, 1072
BspCNI CTCAG 5 cut(s) 450, 589, 610, 1029, 1057
BspDI ATCGAT 2 cut(s) 269, 276
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 5 cut(s) 100, 101, 257, 311, 812
BspTNI GGTCTC 2 cut(s) 173, 716
BsrDI GCAATG 3 cut(s) 459, 792, 1032
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 2 cut(s) 736, 872
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 8 cut(s) 101, 102, 748, 757, 758, 837, 849, 1005
BssMI GATC 2 cut(s) 270, 505
BssNAI GTATAC 1 cut(s) 1025
BssT1I CCWWGG 2 cut(s) 837, 1005
Bst1107I GTATAC 1 cut(s) 1025
Bst2UI CCWGG 3 cut(s) 314, 320, 749
Bst4CI ACNGT 4 cut(s) 199, 501, 638, 853
BstC8I GCNNGC 5 cut(s) 389, 783, 892, 1062, 1074
BstDEI CTNAG 6 cut(s) 437, 576, 618, 924, 1016, 1065
BstDSI CCRYGG 2 cut(s) 837, 849
BstENI CCTNNNNNAGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 59, 810
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 2 cut(s) 273, 508
BstMAI GTCTC 3 cut(s) 173, 219, 716
BstMBI GATC 2 cut(s) 270, 505
BstMWI GCNNNNNNNGC 1 cut(s) 787
BstNI CCWGG 3 cut(s) 314, 320, 749
BstSCI CCNGG 8 cut(s) 101, 102, 284, 312, 318, 747, 756, 757
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 5 cut(s) 89, 281, 709, 889, 1069
BstZ17I GTATAC 1 cut(s) 1025
Bsu15I ATCGAT 2 cut(s) 269, 276
BsuI GTATCC 2 cut(s) 165, 930
BsuRI GGCC 7 cut(s) 100, 487, 747, 890, 894, 992, 1072
BsuTUI ATCGAT 2 cut(s) 269, 276
BtgI CCRYGG 2 cut(s) 837, 849
BtgZI GCGATG 1 cut(s) 1133
BtsCI GGATG 2 cut(s) 59, 810
BtsI GCAGTG 3 cut(s) 79, 448, 891
BtsIMutI CAGTG 4 cut(s) 79, 448, 584, 891
Cac8I GCNNGC 5 cut(s) 389, 783, 892, 1062, 1074
CfoI GCGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 6 cut(s) 98, 99, 256, 316, 485, 810
Cfr9I CCCGGG 2 cut(s) 102, 757
ClaI ATCGAT 2 cut(s) 269, 276
Csp6I GTAC 4 cut(s) 370, 407, 497, 997
CviAII CATG 2 cut(s) 69, 838
CviQI GTAC 4 cut(s) 370, 407, 497, 997
DdeI CTNAG 6 cut(s) 437, 576, 618, 924, 1016, 1065
DpnI GATC 2 cut(s) 272, 507
DpnII GATC 2 cut(s) 270, 505
DrdI GACNNNNNNGTC 2 cut(s) 233, 455
DriI GACNNNNNGTC 1 cut(s) 816
DseDI GACNNNNNNGTC 2 cut(s) 233, 455
EaeI YGGCCR 2 cut(s) 888, 990
Eam1105I GACNNNNNGTC 1 cut(s) 816
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 837, 1005
Eco147I AGGCCT 2 cut(s) 747, 1072
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 2 cut(s) 173, 716
Eco47I GGWCC 3 cut(s) 256, 316, 810
Eco57I CTGAAG 1 cut(s) 364
Eco88I CYCGRG 2 cut(s) 102, 757
EcoNI CCTNNNNNAGG 1 cut(s) 317
EcoO109I RGGNCCY 3 cut(s) 98, 99, 810
EcoRII CCWGG 3 cut(s) 312, 318, 747
EcoT14I CCWWGG 2 cut(s) 837, 1005
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 837, 1005
FaeI CATG 2 cut(s) 72, 841
FaqI GGGAC 1 cut(s) 269
FatI CATG 2 cut(s) 68, 837
FauNDI CATATG 2 cut(s) 173, 568
FblI GTMKAC 3 cut(s) 215, 237, 1024
Fnu4HI GCNGC 5 cut(s) 78, 295, 723, 903, 1058
FokI GGATG 2 cut(s) 46, 817
FriOI GRGCYC 1 cut(s) 102
FseI GGCCGGCC 1 cut(s) 894
Fsp4HI GCNGC 5 cut(s) 78, 295, 723, 903, 1058
FspBI CTAG 2 cut(s) 410, 957
GlaI GCGC 1 cut(s) 146
GluI GCNGC 5 cut(s) 78, 295, 723, 903, 1058
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 7 cut(s) 100, 487, 747, 890, 894, 992, 1072
HapII CCGG 5 cut(s) 103, 285, 539, 758, 891
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 72, 841
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 9 cut(s) 111, 140, 338, 545, 753, 914, 928, 1010, 1130
HpaII CCGG 5 cut(s) 103, 285, 539, 758, 891
HphI GGTGA 1 cut(s) 950
Hpy166II GTNNAC 5 cut(s) 216, 238, 544, 641, 1025
Hpy188I TCNGA 3 cut(s) 505, 526, 1090
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 5 cut(s) 216, 238, 544, 641, 1025
Hpy99I CGWCG 5 cut(s) 223, 239, 819, 1054, 1057
HpyAV CCTTC 2 cut(s) 56, 355
HpyCH4III ACNGT 4 cut(s) 199, 501, 638, 853
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 6 cut(s) 72, 77, 87, 725, 785, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 787
HpyF3I CTNAG 6 cut(s) 437, 576, 618, 924, 1016, 1065
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 72, 841
HspAI GCGC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 890
KroNI GCCGGC 1 cut(s) 892
Kzo9I GATC 2 cut(s) 270, 505
Lsp1109I GCAGC 5 cut(s) 89, 281, 709, 889, 1069
LweI GCATC 5 cut(s) 68, 252, 268, 780, 889
MaeI CTAG 2 cut(s) 410, 957
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 5 cut(s) 202, 443, 632, 853, 877
MalI GATC 2 cut(s) 272, 507
MboI GATC 2 cut(s) 270, 505
MboII GAAGA 4 cut(s) 19, 223, 370, 551
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 738
MlyI GAGTC 3 cut(s) 134, 539, 922
MmeI TCCRAC 2 cut(s) 446, 504
MroNI GCCGGC 1 cut(s) 890
MseI TTAA 3 cut(s) 591, 737, 1125
MslI CAYNNNNRTG 4 cut(s) 464, 836, 884, 1037
MspI CCGG 5 cut(s) 103, 285, 539, 758, 891
MspR9I CCNGG 8 cut(s) 103, 104, 286, 314, 320, 749, 758, 759
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 3 cut(s) 314, 320, 749
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 787
NaeI GCCGGC 1 cut(s) 892
NciI CCSGG 5 cut(s) 103, 104, 286, 758, 759
NcoI CCATGG 1 cut(s) 837
NdeI CATATG 2 cut(s) 173, 568
NdeII GATC 2 cut(s) 270, 505
NgoMIV GCCGGC 1 cut(s) 890
NlaIII CATG 2 cut(s) 72, 841
NlaIV GGNNCC 5 cut(s) 100, 101, 257, 311, 812
NmeAIII GCCGAG 1 cut(s) 1018
NmuCI GTSAC 3 cut(s) 202, 443, 877
OliI CACNNNNGTG 1 cut(s) 884
PceI AGGCCT 2 cut(s) 747, 1072
PctI GAATGC 1 cut(s) 676
PdiI GCCGGC 1 cut(s) 892
PfeI GAWTC 6 cut(s) 111, 338, 753, 914, 1010, 1130
PflMI CCANNNNNTGG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 5 cut(s) 79, 296, 724, 904, 1059
PleI GAGTC 3 cut(s) 134, 539, 922
PpsI GAGTC 3 cut(s) 134, 539, 922
PpuMI RGGWCCY 1 cut(s) 810
PshBI ATTAAT 1 cut(s) 1125
PsiI TTATAA 1 cut(s) 794
Psp5II RGGWCCY 1 cut(s) 810
Psp6I CCWGG 3 cut(s) 312, 318, 747
PspGI CCWGG 3 cut(s) 312, 318, 747
PspN4I GGNNCC 5 cut(s) 100, 101, 257, 311, 812
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 6 cut(s) 98, 99, 256, 316, 485, 810
PspPPI RGGWCCY 1 cut(s) 810
RigI GGCCGGCC 1 cut(s) 894
RsaI GTAC 4 cut(s) 371, 408, 498, 998
RsaNI GTAC 4 cut(s) 370, 407, 497, 997
RseI CAYNNNNRTG 4 cut(s) 464, 836, 884, 1037
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 591, 737, 1125
SatI GCNGC 5 cut(s) 78, 295, 723, 903, 1058
Sau3AI GATC 2 cut(s) 270, 505
Sau96I GGNCC 6 cut(s) 98, 99, 256, 316, 485, 810
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 3 cut(s) 134, 539, 922
ScrFI CCNGG 8 cut(s) 103, 104, 286, 314, 320, 749, 758, 759
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 5 cut(s) 68, 252, 268, 780, 889
SfcI CTRYAG 1 cut(s) 250
SinI GGWCC 3 cut(s) 256, 316, 810
SmaI CCCGGG 2 cut(s) 104, 759
SmiMI CAYNNNNRTG 4 cut(s) 464, 836, 884, 1037
Sse9I AATT 1 cut(s) 738
SseBI AGGCCT 2 cut(s) 747, 1072
SsiI CCGC 4 cut(s) 63, 133, 307, 1112
SspI AATATT 1 cut(s) 589
SspMI CTAG 2 cut(s) 410, 957
StuI AGGCCT 2 cut(s) 747, 1072
StyD4I CCNGG 8 cut(s) 101, 102, 284, 312, 318, 747, 756, 757
StyI CCWWGG 2 cut(s) 837, 1005
TaaI ACNGT 4 cut(s) 199, 501, 638, 853
TaiI ACGT 1 cut(s) 221
TaqI TCGA 6 cut(s) 109, 237, 269, 276, 912, 1138
TasI AATT 1 cut(s) 738
TatI WGTACW 2 cut(s) 369, 406
TfiI GAWTC 6 cut(s) 111, 338, 753, 914, 1010, 1130
Tru1I TTAA 3 cut(s) 591, 737, 1125
Tru9I TTAA 3 cut(s) 591, 737, 1125
TscAI CASTG 4 cut(s) 79, 448, 584, 891
TseFI GTSAC 3 cut(s) 202, 443, 877
TseI GCWGC 5 cut(s) 77, 294, 722, 902, 1057
Tsp45I GTSAC 3 cut(s) 202, 443, 877
TspDTI ATGAA 2 cut(s) 25, 876
TspGWI ACGGA 1 cut(s) 812
TspMI CCCGGG 2 cut(s) 102, 757
TspRI CASTG 4 cut(s) 79, 448, 584, 891
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 256, 316, 810
VspI ATTAAT 1 cut(s) 1125
XagI CCTNNNNNAGG 1 cut(s) 317
XmaI CCCGGG 2 cut(s) 102, 757
XmiI GTMKAC 3 cut(s) 215, 237, 1024
XspI CTAG 2 cut(s) 410, 957
ZrmI AGTACT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.