Rh7BG147300

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000675
Physical Location & Seq
Forward (+)
10952861 .. 10953262
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG147300.1

Sequence Viewer

Length: 402 bp
ATGATAGGTGTCGGAATACCAGGGATATTGTGCATTCTTGGGCTTGGGCTTTATGTTTGTGACAGGGTAGGGAGAGCGCGAGATGGACTCCACCGGCGACAGTCCATCACAGAATTATCCACCGCAGTTGATCAACAAGTACAACCTCCCCGAGTCATAGTTGGGCTTGATGGTCCAACAATTGAGTCGTATCCCAAGATCCAACTAGATGAGACTCATGAGAGCTTGGAGTTGCCCGAGCCCGATGATAAGACCTGTGCGATATGTTTGTGCGAGTACCAGCCCAAGGAAACAATACGAACCATACCTGACTGCAACCATTATTTTCATGCTAGTTGCATATACGAGTGGCTCAGAAAGAATCCGACGTGCCCTCTGTGTCGACATCCGTCAGAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

5.46

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 85 - 128 2e-14 Ring finger domain
zf-RING_11 PF17123 86 - 114 9.6e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 86 - 127 2e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 86 - 127 2.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 90 - 128 3.6e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 382
AccII CGCG 1 cut(s) 79
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 193
AfaI GTAC 2 cut(s) 141, 278
AfiI CCNNNNNNNGG 2 cut(s) 286, 395
AjiI CACGTC 1 cut(s) 369
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 193
Ama87I CYCGRG 2 cut(s) 150, 236
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 173
AvaI CYCGRG 2 cut(s) 150, 236
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 243
BccI CCATC 3 cut(s) 77, 113, 164
BciT130I CCWGG 1 cut(s) 21
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 3 cut(s) 206, 333, 400
BfuI GTATCC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 2 cut(s) 150, 236
BmgBI CACGTC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 21
BoxI GACNNNNGTC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BsaJI CCNNGG 2 cut(s) 20, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 395
Bse118I RCCGGY 1 cut(s) 93
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 20, 285
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 286, 395
BseMII CTCAG 1 cut(s) 367
BseSI GKGCMC 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 79
BsiHKCI CYCGRG 2 cut(s) 150, 236
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 286, 395
BsmAI GTCTC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 33
BsoBI CYCGRG 2 cut(s) 150, 236
Bsp1286I GDGCHC 2 cut(s) 243, 374
Bsp143I GATC 2 cut(s) 130, 198
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 217
BspPI GGATC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 20, 285
BssMI GATC 2 cut(s) 130, 198
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 133, 201
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 130, 198
BstNI CCWGG 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 374
BstUI CGCG 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuI GTATCC 1 cut(s) 201
BtrI CACGTC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 385
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 140, 277
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 2 cut(s) 218, 329
CviJI RGCY 8 cut(s) 43, 49, 166, 225, 241, 283, 352, 399
CviKI_1 RGCY 8 cut(s) 43, 49, 166, 225, 241, 283, 352, 399
CviQI GTAC 2 cut(s) 140, 277
DdeI CTNAG 1 cut(s) 353
DpnI GATC 2 cut(s) 132, 200
DpnII GATC 2 cut(s) 130, 198
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 150, 236
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 221, 332
FaiI YATR 8 cut(s) 54, 158, 219, 265, 305, 330, 341, 343
FatI CATG 2 cut(s) 217, 328
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 382
FokI GGATG 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 3 cut(s) 206, 333, 400
GlaI GCGC 1 cut(s) 78
HapII CCGG 1 cut(s) 94
HhaI GCGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 221, 332
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HinfI GANTC 5 cut(s) 87, 153, 185, 214, 361
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 4 cut(s) 14, 356, 366, 394
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 33, 315, 339
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 2 cut(s) 221, 332
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 130, 198
LpnPI CCDG 7 cut(s) 6, 33, 49, 107, 268, 293, 321
MaeI CTAG 3 cut(s) 206, 333, 400
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 132, 200
MboI GATC 2 cut(s) 130, 198
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 243, 374
MluCI AATT 2 cut(s) 113, 180
MlyI GAGTC 4 cut(s) 81, 162, 194, 208
MmeI TCCRAC 3 cut(s) 200, 226, 389
MnlI CCTC 3 cut(s) 156, 384, 388
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 79
NdeII GATC 2 cut(s) 130, 198
NlaIII CATG 2 cut(s) 221, 332
NmuCI GTSAC 1 cut(s) 59
PagI TCATGA 1 cut(s) 217
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 361
PleI GAGTC 4 cut(s) 81, 161, 193, 208
PpsI GAGTC 4 cut(s) 81, 161, 193, 208
PshAI GACNNNNGTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 2 cut(s) 141, 278
RsaNI GTAC 2 cut(s) 140, 277
SalI GTCGAC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 130, 198
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 4 cut(s) 81, 162, 194, 208
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 2 cut(s) 243, 374
SetI ASST 6 cut(s) 10, 148, 227, 257, 310, 371
SgrAI CRCCGGYG 1 cut(s) 93
SinI GGWCC 1 cut(s) 173
Sse9I AATT 2 cut(s) 113, 180
SsiI CCGC 1 cut(s) 123
SspMI CTAG 3 cut(s) 206, 333, 400
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 382
TasI AATT 2 cut(s) 113, 180
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 1 cut(s) 361
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 3 cut(s) 206, 333, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.