Rh7DG382100

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000675
Physical Location & Seq
Forward (+)
52039097 .. 52040609
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG382100.1

Sequence Viewer

Length: 1143 bp
ATGGCAACCTCAGACATATTATTCTCATTCTTCTTCTTCTTCTTCACCTTCTTACTTCCTCAGATAGCAGATAGCAGATGTGGTGGTTCAACATGCTATGGGAGCGGCCCACTGATTCGATTCCCTTTCCGGCTAAGATACCGCCAACCGCTAAATTGTGGGTATTCCATTCATTTTGACCTTTCATGCAACAGTACACAAAAAAGCACCATTCTCACCCTCCCTTCTTCAGGAGACTTCGAGGTCGAGAGCATCCATTACAGTGACCAAACCATGTGGATCAACGACCTAAACTGGTGCATGCACAAAAGATTCCTTGACAAAGACTTCAGTCTTGTAGGCACGCCTTTCCATTTCTGGCATAGCCTGGAAAACTATACCTACTTCAAGTGCCCGTCCAAAGTTGTGGCTATTGGGTCTTTTGCACCAATCTCTTGCCTTGACGATTACAATTACAACGTCATTGCTGTCCCGTCGAGTTGGTCAACGACTGAGAAACCAGCTCCTCAGTCTCTTTGTCGTGCAATTTCCACAGCTTTGCTTCCGGCGAGTTTTGGGTGGGGGGAGTTTGCTGTAAAGTTGACTTGGGGCGTTCCCGATTGTCATTCTTGTGAAGCAAATGGTAGAGTTTGCAAGCCTAATGTGACAAGTTCGCACATTGAGTGCTCAATTGATGGTATCCCAATATCCGCAAAGACCGGCATAGCAATTGGCGTGTTGATTCCGGCTGGGCTGTTGTGCATTGTTGGATACGCACTCTATGTTGCGGGCAGGAGGGATCATGATGGTCCGTTCCAAGAAACAAACAGGCGTGGTCAGCTTCAAGAACTCATTGAAGCCAATGGACAACCTCAAGTAGTTACAGCGGGTCTTGATGCTCAGACCATTGAGTCATATTTGAAGACTCAACTTGGTGAGAGTTTAGAATTACCTGACCCTAATGACAAAACTTGCTCGATATGTTTGGGTGAGTACCAGTCCAAGGAAATGCTAAGGACTATACCAGAATGCAATCATTATTTTCATGTTGGTTGCATAGACGAGTGGCTTAGAAAGAACCCAACATGTCCACTTTGTCGAAATCTTCCTCGAACACCCGAAGTGTCATTAGTGAGACCTCATGATGATCATTGTATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

380

Amino Acids

42.52

Weight (kDa)

5.83

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 96 5.9e-15 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 316 - 360 5.6e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 317 - 360 3.5e-14 Ring finger domain
zf-RING_11 PF17123 318 - 346 7e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 318 - 359 9.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 318 - 359 8.5e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 242, 889
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 6 cut(s) 105, 142, 149, 690, 767, 866
AclWI GGATC 2 cut(s) 287, 786
AcuI CTGAAG 2 cut(s) 213, 313
AfaI GTAC 2 cut(s) 196, 974
AfiI CCNNNNNNNGG 2 cut(s) 230, 982
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 5 cut(s) 90, 388, 824, 836, 901
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 3 cut(s) 503, 536, 820
AluI AGCT 3 cut(s) 503, 536, 820
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 3 cut(s) 228, 516, 1108
AlwI GGATC 2 cut(s) 287, 786
AoxI GGCC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 107, 788
AsuHPI GGTGA 4 cut(s) 37, 208, 926, 980
AvaII GGWCC 1 cut(s) 788
BaeGI GKGCMC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 1 cut(s) 668
BccI CCATC 2 cut(s) 668, 779
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 2 cut(s) 689, 743
BclI TGATCA 1 cut(s) 1126
BcoDI GTCTC 3 cut(s) 228, 516, 1108
BfuI GTATCC 2 cut(s) 689, 743
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 788
BmgT120I GGNCC 2 cut(s) 107, 788
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 261, 865
BoxI GACNNNNGTC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 908
Bpu10I CCTNAGC 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 837
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 1 cut(s) 981
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 982
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 2 cut(s) 299, 976
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 981
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 230, 982
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 5 cut(s) 24, 74, 483, 521, 893
BseNI ACTGG 2 cut(s) 299, 976
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 395
BseYI CCCAGC 1 cut(s) 728
BshFI GGCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 668
BsiSI CCGG 4 cut(s) 130, 545, 699, 725
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 230, 982
BsmAI GTCTC 3 cut(s) 228, 516, 1108
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 1013
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 1108
Bsp1286I GDGCHC 2 cut(s) 395, 668
Bsp143I GATC 3 cut(s) 279, 778, 1126
BspACI CCGC 6 cut(s) 105, 142, 149, 690, 767, 866
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 5 cut(s) 23, 73, 484, 520, 892
BspHI TCATGA 2 cut(s) 781, 1120
BspPI GGATC 2 cut(s) 287, 786
BspTNI GGTCTC 1 cut(s) 1108
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 698
BsrI ACTGG 2 cut(s) 299, 976
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 1 cut(s) 981
BssMI GATC 3 cut(s) 279, 778, 1126
BssT1I CCWWGG 1 cut(s) 981
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 194, 263
BstC8I GCNNGC 4 cut(s) 302, 344, 635, 769
BstDEI CTNAG 8 cut(s) 10, 60, 134, 492, 507, 879, 992, 1049
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 3 cut(s) 282, 781, 1129
BstMAI GTCTC 3 cut(s) 228, 516, 1108
BstMBI GATC 3 cut(s) 279, 778, 1126
BstMWI GCNNNNNNNGC 2 cut(s) 102, 817
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 3 cut(s) 96, 304, 1068
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 908
BstXI CCANNNNNNTGG 1 cut(s) 406
BsuI GTATCC 2 cut(s) 689, 743
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 110, 268
Cac8I GCNNGC 4 cut(s) 302, 344, 635, 769
CciI TCATGA 2 cut(s) 781, 1120
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 107, 788
Csp6I GTAC 2 cut(s) 195, 973
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 8 cut(s) 93, 186, 274, 301, 782, 1025, 1065, 1121
CviQI GTAC 2 cut(s) 195, 973
DdeI CTNAG 8 cut(s) 10, 60, 134, 492, 507, 879, 992, 1049
DpnI GATC 3 cut(s) 281, 780, 1128
DpnII GATC 3 cut(s) 279, 778, 1126
DrdI GACNNNNNNGTC 2 cut(s) 242, 889
DseDI GACNNNNNNGTC 2 cut(s) 242, 889
Eco130I CCWWGG 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 1108
Eco47I GGWCC 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 213, 313
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 981
FaeI CATG 8 cut(s) 96, 189, 277, 304, 785, 1028, 1068, 1124
FaqI GGGAC 1 cut(s) 455
FatI CATG 8 cut(s) 92, 185, 273, 300, 781, 1024, 1064, 1120
FauI CCCGC 2 cut(s) 760, 859
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
GsaI CCCAGC 1 cut(s) 732
HaeIII GGCC 1 cut(s) 108
HapII CCGG 4 cut(s) 130, 545, 699, 725
Hin1II CATG 8 cut(s) 96, 189, 277, 304, 785, 1028, 1068, 1124
HincII GTYRAC 2 cut(s) 486, 582
HindII GTYRAC 2 cut(s) 486, 582
HinfI GANTC 6 cut(s) 115, 120, 312, 721, 890, 904
HpaII CCGG 4 cut(s) 130, 545, 699, 725
HphI GGTGA 4 cut(s) 37, 208, 926, 980
Hpy166II GTNNAC 4 cut(s) 197, 486, 582, 1070
Hpy188I TCNGA 3 cut(s) 13, 63, 882
Hpy188III TCNNGA 7 cut(s) 231, 247, 596, 782, 824, 872, 1121
Hpy8I GTNNAC 4 cut(s) 197, 486, 582, 1070
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 58, 234
HpyCH4III ACNGT 2 cut(s) 194, 263
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 9 cut(s) 189, 300, 304, 425, 524, 633, 741, 1011, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 817
HpyF3I CTNAG 8 cut(s) 10, 60, 134, 492, 507, 879, 992, 1049
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 8 cut(s) 96, 189, 277, 304, 785, 1028, 1068, 1124
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 3 cut(s) 279, 778, 1126
LmnI GCTCC 2 cut(s) 102, 508
LweI GCATC 2 cut(s) 261, 865
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 3 cut(s) 263, 643, 859
MalI GATC 3 cut(s) 281, 780, 1128
MbiI CCGCTC 1 cut(s) 105
MboI GATC 3 cut(s) 279, 778, 1126
MboII GAAGA 8 cut(s) 22, 25, 28, 31, 34, 219, 913, 1076
MfeI CAATTG 2 cut(s) 669, 708
MhlI GDGCHC 2 cut(s) 395, 668
MluCI AATT 6 cut(s) 154, 451, 525, 669, 708, 926
MlyI GAGTC 2 cut(s) 898, 899
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 9 cut(s) 19, 69, 230, 235, 516, 768, 861, 1098, 1128
MseI TTAA 1 cut(s) 1141
MslI CAYNNNNRTG 2 cut(s) 261, 609
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 4 cut(s) 130, 545, 699, 725
MspR9I CCNGG 1 cut(s) 368
MunI CAATTG 2 cut(s) 669, 708
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 102, 817
NdeII GATC 3 cut(s) 279, 778, 1126
NlaIII CATG 8 cut(s) 96, 189, 277, 304, 785, 1028, 1068, 1124
NmuCI GTSAC 2 cut(s) 263, 643
NspI RCATGY 3 cut(s) 96, 304, 1068
PaeI GCATGC 1 cut(s) 304
PagI TCATGA 2 cut(s) 781, 1120
PciI ACATGT 1 cut(s) 1064
PctI GAATGC 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 115, 120, 312, 721
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 2 cut(s) 898, 898
PpsI GAGTC 2 cut(s) 898, 898
PscI ACATGT 1 cut(s) 1064
PshAI GACNNNNGTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 2 cut(s) 107, 788
RsaI GTAC 2 cut(s) 196, 974
RsaNI GTAC 2 cut(s) 195, 973
RseI CAYNNNNRTG 2 cut(s) 261, 609
SaqAI TTAA 1 cut(s) 1141
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 3 cut(s) 279, 778, 1126
Sau96I GGNCC 2 cut(s) 107, 788
SchI GAGTC 2 cut(s) 898, 899
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 2 cut(s) 395, 668
SfaNI GCATC 2 cut(s) 261, 865
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 2 cut(s) 261, 609
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
SphI GCATGC 1 cut(s) 304
Sse9I AATT 6 cut(s) 154, 451, 525, 669, 708, 926
SsiI CCGC 6 cut(s) 105, 142, 149, 690, 767, 866
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 981
TaaI ACNGT 2 cut(s) 194, 263
TaiI ACGT 1 cut(s) 462
TaqI TCGA 7 cut(s) 118, 240, 246, 476, 956, 1078, 1090
TasI AATT 6 cut(s) 154, 451, 525, 669, 708, 926
TatI WGTACW 1 cut(s) 194
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 4 cut(s) 115, 120, 312, 721
Tru1I TTAA 1 cut(s) 1141
Tru9I TTAA 1 cut(s) 1141
TscAI CASTG 2 cut(s) 117, 268
TseFI GTSAC 2 cut(s) 263, 643
Tsp45I GTSAC 2 cut(s) 263, 643
TspDTI ATGAA 3 cut(s) 161, 174, 1013
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 2 cut(s) 117, 268
VpaK11BI GGWCC 1 cut(s) 788
XagI CCTNNNNNAGG 1 cut(s) 228
XceI RCATGY 3 cut(s) 96, 304, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.