MD15G1289600.v1.1

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000413
Physical Location & Seq
Reverse (-)
26765769 .. 26766835
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1289600.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGACTTGTCTAAATCTTAGGTTGAAGATATCTTTTGCTCAACTTCAGCAACCAACGAACAACTTTGACACAATTTCTTATAGGTGCGGTGGTTTTGGGAACATCTATAAAGGAACTCTATCAGATGGCAGAATTGTAATTGTCAAGCGAGGTAAGCAACATGAACATAGTTCAGGTCAAGGGCTTCTAGAGTTTGAAATAGAGATAATGGTTTTGTACAGGATTCGTCATCGCCGTCTTGTCTCCTTAATTGGGTACTGTGATGAAATGTCTGAGATGATATTGGTCTACGAGTTCATGGAAAAAGGGACCTTGGGAGAACATTTATATGAATCAAATTTGCCTCGCTTGACATGGAGGCAAAGACTTGAAATATGCATTGGTGCAGCAAAGGGCCTTCATTACCTCCACAAAGGTGGAGCCGAAGGCATTATTCACCGTGATGTTAAGTCCACCAACATCTTGTTGGATGCAAAATGTGTCGCCAAAGTTGTTGATTTTGGCCTTTCAAGATCTGGTCCGCTTGATGAAACCCATGTCAGAACAAATGTCAAGGGCACTTTTGGTTGCCTAGATCCTGAGTACATAATGACTCAACAGTTGACAGAAAAATCGGATGTTTACTCCTTCGGCGTTGTTCTCCTTGAGGTGTTATGTGCAAGACCTGCTCTGGATAGGAATCTACCAAGAGAGCAAATAAATTTAGCGGAATGGGGAATGAATTGCAAGAAGAACGGATTGCTTGAACAGATTGTTGATTCTTCACTCAAAGATGCTTATGATAGGCCTACAATGGGTGATGTACTGTGGGACTTGGAGTACGCGTTACAGCTCCAGCAAACAGCAAAGCATAAAGAGCCCCACGAGGATAGCACGATCAATGCTTCATCAGAATTCATATTGCCAAATGTTCAGCGTTTTGCTTCCCATAGCTCTACAGTTAACCAAGATGATATGACCCTTTACGGGGTGGATGAATTGGACACAGCAGCAAACGAAGTATTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

38.02

Weight (kDa)

5.69

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 30 - 222 5.1e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 227 7.9e-36 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 673
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 824
AciI CCGC 3 cut(s) 87, 521, 707
AclWI GGATC 1 cut(s) 569
AcsI RAATTY 3 cut(s) 337, 700, 893
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 5 cut(s) 218, 257, 584, 804, 821
AfiI CCNNNNNNNGG 4 cut(s) 252, 794, 966, 967
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 5 cut(s) 25, 197, 371, 510, 746
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 2 cut(s) 832, 933
AluI AGCT 2 cut(s) 832, 933
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 1 cut(s) 569
AoxI GGCC 3 cut(s) 394, 502, 785
ApeKI GCWGC 2 cut(s) 386, 989
ApoI RAATTY 3 cut(s) 337, 700, 893
AspS9I GGNCC 3 cut(s) 309, 394, 518
AsuHPI GGTGA 2 cut(s) 428, 809
AvaII GGWCC 2 cut(s) 309, 518
BaeGI GKGCMC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 861
BauI CACGAG 1 cut(s) 863
BbvI GCAGC 2 cut(s) 398, 1001
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 2 cut(s) 188, 572
BfmI CTRYAG 1 cut(s) 936
BfuAI ACCTGC 1 cut(s) 673
BglII AGATCT 1 cut(s) 512
BisI GCNGC 2 cut(s) 387, 990
BlsI GCNGC 2 cut(s) 388, 991
Bme18I GGWCC 2 cut(s) 309, 518
BmgT120I GGNCC 3 cut(s) 309, 394, 518
BmiI GGNNCC 2 cut(s) 310, 421
BmsI GCATC 2 cut(s) 460, 763
BpmI CTGGAG 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 665
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 809, 839
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 794, 966, 967
Bse8I GATNNNNATC 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 3 cut(s) 475, 622, 979
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 4 cut(s) 252, 794, 966, 967
BseMII CTCAG 2 cut(s) 264, 570
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 2 cut(s) 398, 1001
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 824
BshFI GGCC 3 cut(s) 396, 504, 787
BslFI GGGAC 2 cut(s) 322, 824
BslI CCNNNNNNNGG 4 cut(s) 252, 794, 966, 967
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 2 cut(s) 322, 824
BsnI GGCC 3 cut(s) 396, 504, 787
Bsp1286I GDGCHC 2 cut(s) 560, 861
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 3 cut(s) 512, 574, 876
BspACI CCGC 3 cut(s) 87, 521, 707
BspANI GGCC 3 cut(s) 396, 504, 787
BspCNI CTCAG 2 cut(s) 265, 571
BspFNI CGCG 1 cut(s) 824
BspLI GGNNCC 2 cut(s) 310, 421
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 1 cut(s) 569
BsrGI TGTACA 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 512, 574, 876
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 863
Bst4CI ACNGT 5 cut(s) 260, 440, 600, 807, 940
BstAPI GCANNNNNTGC 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 17, 273, 579
BstF5I GGATG 3 cut(s) 475, 622, 979
BstFNI CGCG 1 cut(s) 824
BstKTI GATC 3 cut(s) 515, 577, 879
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 3 cut(s) 512, 574, 876
BstMWI GCNNNNNNNGC 3 cut(s) 154, 665, 856
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 2 cut(s) 398, 1001
BstX2I RGATCY 2 cut(s) 512, 574
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 2 cut(s) 512, 574
BsuRI GGCC 3 cut(s) 396, 504, 787
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 3 cut(s) 475, 622, 979
BveI ACCTGC 1 cut(s) 673
Cfr13I GGNCC 3 cut(s) 309, 394, 518
Csp6I GTAC 5 cut(s) 217, 256, 583, 803, 820
CviAII CATG 4 cut(s) 161, 298, 354, 536
CviJI RGCY 8 cut(s) 184, 396, 422, 504, 787, 832, 859, 933
CviKI_1 RGCY 8 cut(s) 184, 396, 422, 504, 787, 832, 859, 933
CviQI GTAC 5 cut(s) 217, 256, 583, 803, 820
DdeI CTNAG 3 cut(s) 17, 273, 579
DpnI GATC 3 cut(s) 514, 576, 878
DpnII GATC 3 cut(s) 512, 574, 876
Eco130I CCWWGG 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 861
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 309, 518
Eco57I CTGAAG 1 cut(s) 29
EcoO109I RGGNCCY 2 cut(s) 309, 394
EcoRI GAATTC 1 cut(s) 893
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 4 cut(s) 164, 301, 357, 539
FaqI GGGAC 2 cut(s) 322, 824
FatI CATG 4 cut(s) 160, 297, 353, 535
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 387, 990
FokI GGATG 3 cut(s) 482, 629, 986
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 2 cut(s) 387, 990
FspBI CTAG 2 cut(s) 188, 572
GluI GCNGC 2 cut(s) 387, 990
GsuI CTGGAG 1 cut(s) 818
HaeIII GGCC 3 cut(s) 396, 504, 787
Hin1II CATG 4 cut(s) 164, 301, 357, 539
HincII GTYRAC 2 cut(s) 603, 943
HindII GTYRAC 2 cut(s) 603, 943
HinfI GANTC 5 cut(s) 223, 332, 592, 679, 758
HpaI GTTAAC 1 cut(s) 943
HphI GGTGA 2 cut(s) 428, 809
Hpy166II GTNNAC 5 cut(s) 289, 453, 603, 622, 943
Hpy188I TCNGA 5 cut(s) 124, 274, 542, 616, 892
Hpy188III TCNNGA 4 cut(s) 188, 510, 578, 671
Hpy8I GTNNAC 5 cut(s) 289, 453, 603, 622, 943
HpyAV CCTTC 3 cut(s) 407, 419, 637
HpyCH4III ACNGT 5 cut(s) 260, 440, 600, 807, 940
HpyCH4V TGCA 5 cut(s) 378, 386, 473, 659, 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 665, 856
HpyF3I CTNAG 3 cut(s) 17, 273, 579
Hsp92II CATG 4 cut(s) 164, 301, 357, 539
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 3 cut(s) 512, 574, 876
LmnI GCTCC 2 cut(s) 419, 837
LpnPI CCDG 7 cut(s) 159, 205, 501, 591, 656, 678, 848
Lsp1109I GCAGC 2 cut(s) 398, 1001
LweI GCATC 2 cut(s) 460, 763
MaeI CTAG 2 cut(s) 188, 572
MaeIII GTNAC 1 cut(s) 825
MalI GATC 3 cut(s) 514, 576, 878
MboI GATC 3 cut(s) 512, 574, 876
MboII GAAGA 3 cut(s) 37, 742, 753
MflI RGATCY 2 cut(s) 512, 574
MhlI GDGCHC 2 cut(s) 560, 861
MluCI AATT 9 cut(s) 72, 132, 138, 249, 337, 700, 721, 893, 977
MluI ACGCGT 1 cut(s) 822
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 6 cut(s) 143, 351, 354, 416, 640, 859
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 3 cut(s) 248, 447, 942
MslI CAYNNNNRTG 3 cut(s) 327, 414, 441
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 3 cut(s) 154, 665, 856
NdeII GATC 3 cut(s) 512, 574, 876
NlaIII CATG 4 cut(s) 164, 301, 357, 539
NlaIV GGNNCC 2 cut(s) 310, 421
NsiI ATGCAT 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 414
PceI AGGCCT 1 cut(s) 787
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PfeI GAWTC 4 cut(s) 223, 332, 679, 758
PkrI GCNGC 2 cut(s) 388, 991
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 310, 421
PspPI GGNCC 3 cut(s) 309, 394, 518
PspPPI RGGWCCY 1 cut(s) 309
PsuI RGATCY 2 cut(s) 512, 574
RsaI GTAC 5 cut(s) 218, 257, 584, 804, 821
RsaNI GTAC 5 cut(s) 217, 256, 583, 803, 820
RseI CAYNNNNRTG 3 cut(s) 327, 414, 441
SaqAI TTAA 3 cut(s) 248, 447, 942
SatI GCNGC 2 cut(s) 387, 990
Sau3AI GATC 3 cut(s) 512, 574, 876
Sau96I GGNCC 3 cut(s) 309, 394, 518
SchI GAGTC 1 cut(s) 586
SduI GDGCHC 2 cut(s) 560, 861
SfaNI GCATC 2 cut(s) 460, 763
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 2 cut(s) 309, 518
SmiMI CAYNNNNRTG 3 cut(s) 327, 414, 441
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 9 cut(s) 72, 132, 138, 249, 337, 700, 721, 893, 977
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 3 cut(s) 87, 521, 707
SspMI CTAG 2 cut(s) 188, 572
StuI AGGCCT 1 cut(s) 787
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 5 cut(s) 260, 440, 600, 807, 940
TasI AATT 9 cut(s) 72, 132, 138, 249, 337, 700, 721, 893, 977
TatI WGTACW 3 cut(s) 216, 582, 802
TfiI GAWTC 4 cut(s) 223, 332, 679, 758
Tru1I TTAA 3 cut(s) 248, 447, 942
Tru9I TTAA 3 cut(s) 248, 447, 942
TseI GCWGC 2 cut(s) 386, 989
TspGWI ACGGA 1 cut(s) 750
VpaK11BI GGWCC 2 cut(s) 309, 518
XapI RAATTY 3 cut(s) 337, 700, 893
XbaI TCTAGA 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 188, 572
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.