pycom02g01680

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000413
Physical Location & Seq
Forward (+)
1006097 .. 1006912
816 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01680.1

Sequence Viewer

Length: 816 bp
ATGGTCACTCGGATAGAACCCCATAGCCTAAACACTTGCAAAATTCAGCAACTCCATCAAAGTTTCATGGAAAATCCTCCTATCCGTAAAACCCCTATCCCTCTATTTTCCGTGCTTGTTTTTCTCCTCCATTTCTCATCCCTTCACTTTCCCTCGTTGGCTTATGAGCCCCCTGATAAGTACTTCATCAACTGTGGGTCAAATGCTAATGCCACCTTCAATAACCATGTCTTCACTCCAGATCGTTTCTTCCACTCGAAGGCGAGCAGCTGTATCAATGGCGGCAACCAGTCGAATCTTTACCTTACAGCAAGAATTTTCAGGCGAGAATCCTACTATAAGTTCGACATCACTGAAAACGGTACTTATTATGTACGTCTGCATTTCTTGGCTTTCGCCTCTTCCTCAAGTAATCTCTCCGCTGCTACTTTTGATGTTTCGGCTTTTCCGAATATTTCGAATTCTGGATTCATGTTGTTGAAGAATTTCACTGCTAAGAATAGTAGTGGCAATTCTACGATAAAGGAGTTCTTTCTTGGCATTCATCCTGGCTCATTTAGGATATACTTTACGCCTCGTGGATCGTCTTTTGCATTTGTAAATGCCATTGAAGTCTTCCTTGCCCCTGCAAATTTCAGCCCTAAGAATTACACAAGTAGCTCCCCATTAGTTCTACATACAATTTATAGGGTGAATGTTGGAGGTCAAGAACTCGAACCAGATAAGGACAAACTATGGCGAAACTGGGATCCTGATCGATCTTTATCTGTTGAAGTCAAACCCTGTATGGAAAGTTGGACCCTTACAGACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

272

Amino Acids

30.71

Weight (kDa)

8.83

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 61 - 145 3.5e-07 Malectin domain
Malectin_like PF12819 63 - 253 4.4e-13 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 282, 420
AclWI GGATC 3 cut(s) 589, 743, 756
AcsI RAATTY 5 cut(s) 42, 315, 460, 484, 631
AcyI GRCGYC 1 cut(s) 810
AfaI GTAC 3 cut(s) 182, 364, 375
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 4 cut(s) 220, 481, 611, 773
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 2 cut(s) 270, 660
AluI AGCT 2 cut(s) 270, 660
AlwI GGATC 3 cut(s) 589, 743, 756
ApeKI GCWGC 2 cut(s) 267, 422
ApoI RAATTY 5 cut(s) 42, 315, 460, 484, 631
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 798
AsuHPI GGTGA 1 cut(s) 703
AsuII TTCGAA 1 cut(s) 458
AvaII GGWCC 1 cut(s) 798
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 2 cut(s) 223, 607
BbvI GCAGC 2 cut(s) 279, 409
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 549
BisI GCNGC 3 cut(s) 268, 283, 423
BlsI GCNGC 3 cut(s) 269, 284, 424
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 798
BmiI GGNNCC 2 cut(s) 750, 800
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 2 cut(s) 223, 607
BpmI CTGGAG 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 391
Bsa29I ATCGAT 1 cut(s) 757
BsaBI GATNNNNATC 2 cut(s) 753, 763
BsaHI GRCGYC 1 cut(s) 810
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 289, 749
Bse8I GATNNNNATC 2 cut(s) 753, 763
BseBI CCWGG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 757
BseGI GGATG 2 cut(s) 137, 544
BseJI GATNNNNATC 2 cut(s) 753, 763
BseLI CCNNNNNNNGG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 289, 749
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 279, 409
BshVI ATCGAT 1 cut(s) 757
BslI CCNNNNNNNGG 1 cut(s) 259
BsmI GAATGC 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 5 cut(s) 241, 581, 748, 754, 758
BspACI CCGC 2 cut(s) 282, 420
BspDI ATCGAT 1 cut(s) 757
BspLI GGNNCC 2 cut(s) 750, 800
BspPI GGATC 3 cut(s) 589, 743, 756
BspT104I TTCGAA 1 cut(s) 458
BsrI ACTGG 2 cut(s) 289, 749
BssMI GATC 5 cut(s) 241, 581, 748, 754, 758
BssNI GRCGYC 1 cut(s) 810
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 2 cut(s) 194, 362
Bst6I CTCTTC 1 cut(s) 406
BstACI GRCGYC 1 cut(s) 810
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 495, 642
BstF5I GGATG 2 cut(s) 137, 544
BstKTI GATC 5 cut(s) 244, 584, 751, 757, 761
BstMBI GATC 5 cut(s) 241, 581, 748, 754, 758
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 279, 409
BstV2I GAAGAC 2 cut(s) 223, 607
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
Bsu15I ATCGAT 1 cut(s) 757
BsuTUI ATCGAT 1 cut(s) 757
BtsCI GGATG 2 cut(s) 137, 544
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 351, 489
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 798
ClaI ATCGAT 1 cut(s) 757
Csp6I GTAC 3 cut(s) 181, 363, 374
CviAII CATG 3 cut(s) 67, 227, 472
CviJI RGCY 9 cut(s) 27, 161, 169, 270, 392, 443, 552, 639, 660
CviKI_1 RGCY 9 cut(s) 27, 161, 169, 270, 392, 443, 552, 639, 660
CviQI GTAC 3 cut(s) 181, 363, 374
DdeI CTNAG 2 cut(s) 495, 642
DpnI GATC 5 cut(s) 243, 583, 750, 756, 760
DpnII GATC 5 cut(s) 241, 581, 748, 754, 758
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 798
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 3 cut(s) 70, 230, 475
FalI AAGNNNNNCTT 4 cut(s) 515, 547, 603, 635
FatI CATG 3 cut(s) 66, 226, 471
Fnu4HI GCNGC 3 cut(s) 268, 283, 423
FokI GGATG 2 cut(s) 124, 531
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 268, 283, 423
GluI GCNGC 3 cut(s) 268, 283, 423
GsuI CTGGAG 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 810
Hin1II CATG 3 cut(s) 70, 230, 475
HinfI GANTC 3 cut(s) 295, 329, 468
HphI GGTGA 1 cut(s) 703
Hpy188I TCNGA 2 cut(s) 12, 450
Hpy188III TCNNGA 4 cut(s) 239, 465, 707, 752
HpyAV CCTTC 3 cut(s) 152, 226, 253
HpyCH4III ACNGT 2 cut(s) 194, 362
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 39, 382, 593, 629
HpyF3I CTNAG 2 cut(s) 495, 642
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 810
Hsp92II CATG 3 cut(s) 70, 230, 475
Kzo9I GATC 5 cut(s) 241, 581, 748, 754, 758
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 2 cut(s) 279, 409
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 4
MalI GATC 5 cut(s) 243, 583, 750, 756, 760
MboI GATC 5 cut(s) 241, 581, 748, 754, 758
MboII GAAGA 5 cut(s) 223, 241, 393, 493, 607
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 8 cut(s) 42, 315, 460, 484, 511, 631, 646, 681
MmeI TCCRAC 2 cut(s) 679, 776
MnlI CCTC 8 cut(s) 87, 111, 137, 163, 409, 415, 585, 695
MroXI GAANNNNTTC 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 270, 422
MspR9I CCNGG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 549
NdeII GATC 5 cut(s) 241, 581, 748, 754, 758
NlaIII CATG 3 cut(s) 70, 230, 475
NlaIV GGNNCC 2 cut(s) 750, 800
NmuCI GTSAC 1 cut(s) 4
NspV TTCGAA 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 295, 329, 468
PkrI GCNGC 3 cut(s) 269, 284, 424
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 750, 800
PspPI GGNCC 1 cut(s) 798
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 270
RsaI GTAC 3 cut(s) 182, 364, 375
RsaNI GTAC 3 cut(s) 181, 363, 374
SatI GCNGC 3 cut(s) 268, 283, 423
Sau3AI GATC 5 cut(s) 241, 581, 748, 754, 758
Sau96I GGNCC 1 cut(s) 798
ScaI AGTACT 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 218, 272, 306, 379, 662, 706
SfuI TTCGAA 1 cut(s) 458
SinI GGWCC 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 8 cut(s) 42, 315, 460, 484, 511, 631, 646, 681
SsiI CCGC 2 cut(s) 282, 420
SspI AATATT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 194, 362
TaiI ACGT 1 cut(s) 379
TaqI TCGA 6 cut(s) 257, 293, 345, 458, 714, 757
TasI AATT 8 cut(s) 42, 315, 460, 484, 511, 631, 646, 681
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 3 cut(s) 295, 329, 468
TscAI CASTG 2 cut(s) 358, 496
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 267, 422
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 55, 175, 460, 533
TspGWI ACGGA 2 cut(s) 74, 100
TspRI CASTG 2 cut(s) 358, 496
VpaK11BI GGWCC 1 cut(s) 798
XapI RAATTY 5 cut(s) 42, 315, 460, 484, 631
XmnI GAANNNNTTC 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.