Rw2G014940

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000413
Physical Location & Seq
Reverse (-)
17148824 .. 17149960
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014940.1

Sequence Viewer

Length: 1137 bp
ATGTTGTGTTTGAGACACAAAAAGGCGAGAAAGAGGAACAGAGGAGGGATTTCCCACAACCTTGGGTTGAAGATATCTTTTGCTCAAATCCGGTCTGCAACAAACAACTTTGATCCGAAAATGCAGATAGGTGTGGGTGGTTTTGGGTATGTTTATAAAGGAACTCTCTCTAATGGCACCAAAGTGGCTGTGAAGCGTTGTAAGCAAGAGGGGCAAAGGTCAGGCCAAGGCCTTCCAGAATTCGAAACAGAAATCATAGTGTTGTCGAAAATCCGCCACCGCCATCTTGTCTCCTTAATTGGTTACTGTGATGAAGGGTCTGAGATGATACTAGTGTATGAGTTCATGGAAAAAGGGACCTTGAGAGATCATTTGTATGAATCGGATGTGCCTCGCTTGTCGTGGAAGCAAAGACTTGAAATTTGCATAGGTTCAGCAACTGGACTTGATTATCTCCATAAAGGTGCAGCAGGGGGCATCATCCACCGTGATGTGAAGTCCACCAACATATTGCTTGATGAGAACCTCGTTGCTAAAGTCGCTGACTTCGGGCTTTCGAGGTCTGGCCCTCTTGATGAAACTCATGTCAGCACGGTTGTGAAAGGCACTATCGGTTACCTTGATCCCGAGTACATGATGTCACAGCAGTTGACAGAGAAGTCTGATGTGTACTCATTTGGTGTAGTTCTTCTTGAGGTGTTATGTGGAAGACCTGCTATTGATATAACGCTTCCAAGAGAGAAAGTGAACTTAGCTGAATGGGTTGTGCTGTGCAAGAAAGAAGGGTTGCTAGAAGAGGTCATTGACGTTTCATTGAAGGGTCATATTGATCCTAGCTCACTGAGACATTTTATTGAGACTGCAGAGAAGTGTTTGCAACACGATTCTTCTGATAGGCCCACTATGGCTGAGGTGCTGTGGGATTTGGACTATACATTGAAGCTTCATCAAACTGCGAGGCTTGGAGAAGCCCATGAGGACAGCACTACCAGTGCTTCATCAGCTTTTTTACTACCAAATATTCGGCATTTTGCTTCACTTGATTCGACAGTTAACAGAGCTGATATGAGGGACGATGAGATGGAGTCCACAGAAAGCGAAATTTTCTCCCAACTGAGAATCGGCGAGGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

42.28

Weight (kDa)

6.18

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 306 3.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 41 - 307 2.9e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AasI GACNNNNNNGTC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 2 cut(s) 274, 280
AclWI GGATC 3 cut(s) 107, 617, 824
AcsI RAATTY 3 cut(s) 239, 420, 1101
AfaI GTAC 2 cut(s) 632, 671
AgsI TTSAA 4 cut(s) 70, 419, 817, 940
AhlI ACTAGT 1 cut(s) 331
AleI CACNNNNGTG 2 cut(s) 182, 596
AluBI AGCT 5 cut(s) 755, 837, 943, 1004, 1061
AluI AGCT 5 cut(s) 755, 837, 943, 1004, 1061
Alw26I GTCTC 4 cut(s) 7, 295, 838, 851
AlwI GGATC 3 cut(s) 107, 617, 824
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 626
AoxI GGCC 5 cut(s) 223, 229, 565, 896, 1128
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 3 cut(s) 239, 420, 1101
ArsI GACNNNNNNTTYG 2 cut(s) 405, 437
AspS9I GGNCC 3 cut(s) 357, 566, 897
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 1 cut(s) 357
BaeI ACNNNNGTAYC 2 cut(s) 320, 353
BanI GGYRCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 715
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 1 cut(s) 479
BccI CCATC 2 cut(s) 291, 1075
BcoDI GTCTC 4 cut(s) 7, 295, 838, 851
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 3 cut(s) 332, 791, 834
BfmI CTRYAG 1 cut(s) 861
BfuAI ACCTGC 1 cut(s) 721
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 357, 566, 897
BmiI GGNNCC 2 cut(s) 178, 358
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 715
Bpu10I CCTNAGC 1 cut(s) 909
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 382, 713
BsaJI CCNNGG 2 cut(s) 61, 226
BsaWI WCCGGW 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 445, 990
BseDI CCNNGG 2 cut(s) 61, 226
BseGI GGATG 2 cut(s) 391, 480
BseMII CTCAG 4 cut(s) 312, 833, 900, 1106
BseNI ACTGG 2 cut(s) 445, 990
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 5 cut(s) 225, 231, 567, 898, 1130
BshNI GGYRCC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 2 cut(s) 370, 1085
BsmAI GTCTC 4 cut(s) 7, 295, 838, 851
BsmFI GGGAC 2 cut(s) 370, 1085
BsnI GGCC 5 cut(s) 225, 231, 567, 898, 1130
BsoBI CYCGRG 1 cut(s) 626
Bsp119I TTCGAA 1 cut(s) 243
Bsp143I GATC 4 cut(s) 112, 367, 622, 829
BspACI CCGC 2 cut(s) 274, 280
BspANI GGCC 5 cut(s) 225, 231, 567, 898, 1130
BspCNI CTCAG 4 cut(s) 313, 834, 901, 1107
BspLI GGNNCC 2 cut(s) 178, 358
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 1 cut(s) 721
BspPI GGATC 3 cut(s) 107, 617, 824
BspT104I TTCGAA 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 445, 990
BssECI CCNNGG 2 cut(s) 61, 226
BssMI GATC 4 cut(s) 112, 367, 622, 829
BssT1I CCWWGG 2 cut(s) 61, 226
Bst4CI ACNGT 4 cut(s) 308, 488, 595, 1051
Bst6I CTCTTC 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 321, 751, 842, 909, 1115
BstEII GGTNACC 1 cut(s) 614
BstF5I GGATG 2 cut(s) 391, 480
BstKTI GATC 4 cut(s) 115, 370, 625, 832
BstMAI GTCTC 4 cut(s) 7, 295, 838, 851
BstMBI GATC 4 cut(s) 112, 367, 622, 829
BstMWI GCNNNNNNNGC 4 cut(s) 202, 211, 539, 1001
BstPI GGTNACC 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 715
BstXI CCANNNNNNTGG 1 cut(s) 62
BsuRI GGCC 5 cut(s) 225, 231, 567, 898, 1130
BtsCI GGATG 2 cut(s) 391, 480
BtsIMutI CAGTG 2 cut(s) 839, 997
BveI ACCTGC 1 cut(s) 721
CaiI CAGNNNCTG 1 cut(s) 440
Cfr13I GGNCC 3 cut(s) 357, 566, 897
Csp6I GTAC 2 cut(s) 631, 670
CviAII CATG 4 cut(s) 346, 584, 634, 974
CviQI GTAC 2 cut(s) 631, 670
DdeI CTNAG 5 cut(s) 321, 751, 842, 909, 1115
DpnI GATC 4 cut(s) 114, 369, 624, 831
DpnII GATC 4 cut(s) 112, 367, 622, 829
DrdI GACNNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 1 cut(s) 658
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 61, 226
Eco147I AGGCCT 1 cut(s) 231
Eco32I GATATC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 626
Eco91I GGTNACC 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 357
EcoO65I GGTNACC 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 239
EcoRV GATATC 1 cut(s) 75
EcoT14I CCWWGG 2 cut(s) 61, 226
ErhI CCWWGG 2 cut(s) 61, 226
FaeI CATG 4 cut(s) 349, 587, 637, 977
FaqI GGGAC 2 cut(s) 370, 1085
FatI CATG 4 cut(s) 345, 583, 633, 973
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 2 cut(s) 398, 467
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 3 cut(s) 332, 791, 834
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 5 cut(s) 225, 231, 567, 898, 1130
HapII CCGG 1 cut(s) 91
Hin1II CATG 4 cut(s) 349, 587, 637, 977
HincII GTYRAC 2 cut(s) 651, 1054
HindII GTYRAC 2 cut(s) 651, 1054
HindIII AAGCTT 1 cut(s) 941
HinfI GANTC 5 cut(s) 380, 884, 1043, 1085, 1119
HpaI GTTAAC 1 cut(s) 1054
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 6 cut(s) 501, 651, 670, 748, 1054, 1089
Hpy188I TCNGA 5 cut(s) 117, 322, 385, 664, 892
Hpy188III TCNNGA 4 cut(s) 236, 572, 626, 692
Hpy8I GTNNAC 6 cut(s) 501, 651, 670, 748, 1054, 1089
HpyAV CCTTC 4 cut(s) 242, 308, 776, 811
HpyCH4III ACNGT 4 cut(s) 308, 488, 595, 1051
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 7 cut(s) 98, 124, 426, 467, 774, 863, 877
HpyF10VI GCNNNNNNNGC 4 cut(s) 202, 211, 539, 1001
HpyF3I CTNAG 5 cut(s) 321, 751, 842, 909, 1115
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 4 cut(s) 349, 587, 637, 977
KspAI GTTAAC 1 cut(s) 1054
Kzo9I GATC 4 cut(s) 112, 367, 622, 829
LpnPI CCDG 8 cut(s) 104, 207, 249, 426, 456, 549, 726, 1003
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 1 cut(s) 486
MaeI CTAG 3 cut(s) 332, 791, 834
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 302, 614, 639
MalI GATC 4 cut(s) 114, 369, 624, 831
MboI GATC 4 cut(s) 112, 367, 622, 829
MboII GAAGA 5 cut(s) 82, 680, 720, 806, 879
MluCI AATT 4 cut(s) 239, 297, 420, 1101
MlyI GAGTC 1 cut(s) 1094
MseI TTAA 2 cut(s) 296, 1053
MslI CAYNNNNRTG 5 cut(s) 182, 375, 462, 489, 596
MspI CCGG 1 cut(s) 91
MwoI GCNNNNNNNGC 4 cut(s) 202, 211, 539, 1001
NdeII GATC 4 cut(s) 112, 367, 622, 829
NlaIII CATG 4 cut(s) 349, 587, 637, 977
NlaIV GGNNCC 2 cut(s) 178, 358
NmuCI GTSAC 1 cut(s) 639
NspV TTCGAA 1 cut(s) 243
OliI CACNNNNGTG 2 cut(s) 182, 596
PceI AGGCCT 1 cut(s) 231
PfeI GAWTC 4 cut(s) 380, 884, 1043, 1119
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
PpuMI RGGWCCY 1 cut(s) 357
PsiI TTATAA 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 357
PspEI GGTNACC 1 cut(s) 614
PspN4I GGNNCC 2 cut(s) 178, 358
PspPI GGNCC 3 cut(s) 357, 566, 897
PspPPI RGGWCCY 1 cut(s) 357
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 632, 671
RsaNI GTAC 2 cut(s) 631, 670
RseI CAYNNNNRTG 5 cut(s) 182, 375, 462, 489, 596
SaqAI TTAA 2 cut(s) 296, 1053
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 4 cut(s) 112, 367, 622, 829
Sau96I GGNCC 3 cut(s) 357, 566, 897
SchI GAGTC 1 cut(s) 1094
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 861
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 5 cut(s) 182, 375, 462, 489, 596
SmlI CTYRAG 2 cut(s) 361, 692
SmoI CTYRAG 2 cut(s) 361, 692
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 4 cut(s) 239, 297, 420, 1101
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 2 cut(s) 274, 280
SspI AATATT 1 cut(s) 1021
SspMI CTAG 3 cut(s) 332, 791, 834
StuI AGGCCT 1 cut(s) 231
StyI CCWWGG 2 cut(s) 61, 226
TaaI ACNGT 4 cut(s) 308, 488, 595, 1051
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 243, 266, 557, 1046
TasI AATT 4 cut(s) 239, 297, 420, 1101
TatI WGTACW 2 cut(s) 630, 669
TfiI GAWTC 4 cut(s) 380, 884, 1043, 1119
Tru1I TTAA 2 cut(s) 296, 1053
Tru9I TTAA 2 cut(s) 296, 1053
TscAI CASTG 2 cut(s) 846, 997
TseFI GTSAC 1 cut(s) 639
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 639
TspDTI ATGAA 7 cut(s) 327, 334, 393, 591, 801, 935, 987
TspRI CASTG 2 cut(s) 846, 997
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 3 cut(s) 239, 420, 1101
XspI CTAG 3 cut(s) 332, 791, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.