Rroxscaffold_159G00432780

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000413
Physical Location & Seq
Forward (+)
388792 .. 391142
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432780.1

Sequence Viewer

Length: 2136 bp
ATGATTATTTCATCAACTGTGGTTCACATGATAAATGTGAGCCTCACTCCTGGCCAGAATTTCTCTGGGGAATCGAAGCCTGCAGGTTACTCTTTCTCCAAAAGCAAGGCTGTCATAGACATCAACCAGTTGCCAGAGATATCACCTCTATATAAGACAGCAAGAAGTTTCAATGAACCATTCTACTACCAGTTCAGCATCACTGAAGATGGTACTTATCTAGTACGCTTACATTTCTCTGCTTTCTGCTCCTCCTCCTCAACTAATCTCTCCATGACTGTTTTTGGTGTTTTGGATTCTAAGAATTTCACACTGTTGAACAATTTCACTGCCAAGAACACTACCAACTCCCCTGTGATAAAGGAATTCTTTCTCCAAATTGATATTACCGACTCATTTAACTATATTTTACTCCTCAACCATCATCTTTTACTTTACAGACTCAACGTTGGAGGCTCAACAGTAAATGACACAATAGAGAGAAACTGGGAAACAGATGATAGTCATATTTTTGATCAAAACTCTGCAAAGAAAGCCCCTCCTCAAAATTACCGCGGAAAAAGTGATGGTTTGGTTGTATCTAATGAGTCTGTAGCCCCACTTTCGGTTTACCAGACTGCAAGAGAGATGATGAATGGCAGTACTAACATAACATGGTTTTTTAGTGTGAGTAGTAAAGCTAGACACATTGTCCGGGCTCACTTCTGTGACATTGTTGGTCAGCCTGGTAACATTATATTTAACTTGTATGCAAATGGCAACTTCCGCAAGGAGATCGGCAACATTTCTCAATCTTCAATTTTTCAATGTTCGGCTATTCCCTTCTACTATGACTTTGTGGTGAATTATAGTGAGTCTGAACTCTTTAATATCAGCAGAAGACCTAAGGATGTTGCTTTTGAACAAAATGCATTTCTCAATGGTCTGGAAATATTGGAGATAATGGAGGGATTAGCTCCAACTCCCAATGTGAAAGAGTCCAAGAAGAAAGTTGTGGCTCCTGTGGTTGGTTCAGTTCTTGGAGGCCTAGCACTCATCTGCGTTTTAATAGTTGGATTTGTGTTTGGTTTCAGACACAGAAAGGCAGAAAAGCATGTGGAAACTTCAGTTTGGTCACCAATGCCTACAAATGGAGGAGGGAGTTCTCACAGCTCCGCTCTCAATCTAGATTATCTTGGGTTGAAGATATCTTTCAATGAAATTCAGTCTGCAACGAACAACTTTGACACAAAGTTGGTGATAGGTAAGGGTGGCTTTGGGAATGTTTATAAAGGCACTCTTTTGAATGGCACAAAAGTGGCTGTGAAGCGAGCTTATAAGCGAGATGAGCATGGGTCAGGATCAGGCCAAGGCCTCCTAGAATTTGAAACAGAAATCATAGTGTTATCGAAAATCCGCCACCGCCATCTTGTCTCCTTAATTGGTTACTGTAATGAAAGGTCTGAAATGATACTAGTGTATGAGTTCATGGAAAAAGGGAGGTTGAGAGATCATTTGTATGATTTAGACGTTCCTCGCTTGTCGTGGAATCAAAGACTTGAAATTTGTACTGGAGCAGCAAGGGATCTTCATTATCTCCACACAGGTGCAGCTAGGGGAATCATTCACCGAGATGTCAAGTCCACCAACATATTGCTTGAAGAAAACCATGTTGCCAAAGTTGCTGACTTTGGCCTTTCGAGATCTGGAGCTCTCGATGAAACGCATGTCCGCACTAATGTTAAAGGCACTTTTGGTTACCTTGATCCTGAGTACATGATGTCTGAACAATTGGCAGAAAAATCTGATGTTTACTCATTTGGTGTAGTTCTTCTTGAGATTGATCCTAGCTCACTAAGAACTTTTGGTGAGACGGCTGAGAAGTGTTTGCAAGAAGATGCTTCTGATAGACCAACAATGGCTGATATGCTGTGGGATTTGGAATATGCATTACAGCTTCAGAAAACAACAAAGCTTAAAGAGGCTCATGCGAACAGCACCACCATTGATGCTTCATCAGCGGCATTCGGTTTGCCAATTGTTCAGCGTTTTGCTTCACTTGGTTCGACAACAAATGGAGATGATATGAGGGACAATGACTTGGACACAACAGAAAACAAAATTTTCTCCCAATTGAAAATTGGTGATGCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

711

Amino Acids

79.18

Weight (kDa)

6.15

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 144 - 313 2.6e-09 Malectin-like domain
Pkinase PF00069 411 - 607 1.6e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 412 - 607 9.8e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1269, 1317
Acc36I ACCTGC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 1157
AccII CGCG 1 cut(s) 555
AciI CCGC 8 cut(s) 553, 555, 766, 1155, 1396, 1402, 1711, 2000
AclI AACGTT 1 cut(s) 447
AclWI GGATC 4 cut(s) 1348, 1572, 1739, 1817
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 7 cut(s) 58, 304, 365, 1200, 1361, 1542, 2100
AcuI CTGAAG 3 cut(s) 225, 1089, 1922
AfaI GTAC 5 cut(s) 214, 225, 643, 1549, 1754
AfiI CCNNNNNNNGG 3 cut(s) 604, 1007, 1130
AhdI GACNNNNNGTC 1 cut(s) 689
AhlI ACTAGT 1 cut(s) 1453
AjnI CCWGG 2 cut(s) 49, 724
AleI CACNNNNGTG 3 cut(s) 705, 1295, 1584
AluBI AGCT 9 cut(s) 680, 956, 1152, 1313, 1592, 1691, 1830, 1936, 1954
AluI AGCT 9 cut(s) 680, 956, 1152, 1313, 1592, 1691, 1830, 1936, 1954
Alw21I GWGCWC 1 cut(s) 1693
Alw26I GTCTC 2 cut(s) 1417, 1844
AlwI GGATC 4 cut(s) 1348, 1572, 1739, 1817
AoxI GGCC 5 cut(s) 52, 1024, 1345, 1351, 1672
ApeKI GCWGC 2 cut(s) 1556, 1589
ApoI RAATTY 7 cut(s) 58, 304, 365, 1200, 1361, 1542, 2100
ArsI GACNNNNNNTTYG 2 cut(s) 1527, 1559
Asp700I GAANNNNTTC 2 cut(s) 323, 369
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 7 cut(s) 135, 853, 1107, 1249, 1598, 1859, 2135
AxyI CCTNAGG 1 cut(s) 885
BaeI ACNNNNGTAYC 2 cut(s) 1442, 1475
BalI TGGCCA 1 cut(s) 54
BanII GRGCYC 2 cut(s) 700, 1693
BbsI GAAGAC 1 cut(s) 886
Bbv12I GWGCWC 1 cut(s) 1693
BbvI GCAGC 2 cut(s) 1568, 1601
BccI CCATC 4 cut(s) 203, 429, 560, 1413
BceAI ACGGC 1 cut(s) 1869
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 2 cut(s) 51, 726
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 2 cut(s) 1417, 1844
BcuI ACTAGT 1 cut(s) 1453
BfaI CTAG 8 cut(s) 221, 681, 1028, 1166, 1358, 1454, 1593, 1827
BfmI CTRYAG 2 cut(s) 81, 591
BfuAI ACCTGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 1682
BisI GCNGC 3 cut(s) 1557, 1590, 2001
BlsI GCNGC 3 cut(s) 1558, 1591, 2002
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 3 cut(s) 51, 695, 726
BmeRI GACNNNNNGTC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 999
BmrFI CCNGG 3 cut(s) 51, 695, 726
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 4 cut(s) 207, 1867, 1978, 2116
BmuI ACTGGG 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 886
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpmI CTGGAG 2 cut(s) 1572, 1707
BpuEI CTTGAG 1 cut(s) 1835
BpuMI CCSGG 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 553, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 1007, 1130
Bse1I ACTGG 4 cut(s) 127, 190, 491, 1555
Bse21I CCTNAGG 1 cut(s) 885
BseBI CCWGG 2 cut(s) 51, 726
BseDI CCNNGG 2 cut(s) 553, 1348
BseGI GGATG 1 cut(s) 895
BseLI CCNNNNNNNGG 3 cut(s) 604, 1007, 1130
BseMII CTCAG 2 cut(s) 1740, 1848
BseNI ACTGG 4 cut(s) 127, 190, 491, 1555
BseRI GAGGAG 6 cut(s) 241, 244, 247, 404, 531, 1149
BseXI GCAGC 2 cut(s) 1568, 1601
BsgI GTGCAG 1 cut(s) 1608
Bsh1236I CGCG 1 cut(s) 555
BshFI GGCC 5 cut(s) 54, 1026, 1347, 1353, 1674
BsiHKAI GWGCWC 1 cut(s) 1693
BsiSI CCGG 1 cut(s) 694
BslFI GGGAC 1 cut(s) 2084
BslI CCNNNNNNNGG 3 cut(s) 604, 1007, 1130
BsmAI GTCTC 2 cut(s) 1417, 1844
BsmBI CGTCTC 1 cut(s) 1844
BsmFI GGGAC 1 cut(s) 2084
BsmI GAATGC 1 cut(s) 2003
BsnI GGCC 5 cut(s) 54, 1026, 1347, 1353, 1674
Bsp1286I GDGCHC 2 cut(s) 700, 1693
Bsp143I GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
BspACI CCGC 8 cut(s) 553, 555, 766, 1155, 1396, 1402, 1711, 2000
BspANI GGCC 5 cut(s) 54, 1026, 1347, 1353, 1674
BspCNI CTCAG 2 cut(s) 1741, 1849
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 999
BspMAI CTGCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 4 cut(s) 1348, 1572, 1739, 1817
BsrBI CCGCTC 1 cut(s) 1157
BsrI ACTGG 4 cut(s) 127, 190, 491, 1555
BssECI CCNNGG 2 cut(s) 553, 1348
BssMI GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
BssT1I CCWWGG 1 cut(s) 1348
Bst2UI CCWGG 2 cut(s) 51, 726
Bst4CI ACNGT 5 cut(s) 19, 280, 315, 463, 1430
BstC8I GCNNGC 2 cut(s) 81, 1311
BstDEI CTNAG 5 cut(s) 300, 885, 1749, 1835, 1857
BstDSI CCRYGG 1 cut(s) 553
BstEII GGTNACC 2 cut(s) 1113, 1736
BstF5I GGATG 1 cut(s) 895
BstFNI CGCG 1 cut(s) 555
BstKTI GATC 8 cut(s) 517, 777, 1343, 1492, 1567, 1685, 1747, 1825
BstMAI GTCTC 2 cut(s) 1417, 1844
BstMBI GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
BstMWI GCNNNNNNNGC 5 cut(s) 533, 765, 1327, 1661, 1997
BstNI CCWGG 2 cut(s) 51, 726
BstNSI RCATGY 2 cut(s) 1097, 1709
BstPI GGTNACC 2 cut(s) 1113, 1736
BstSCI CCNGG 3 cut(s) 49, 693, 724
BstSFI CTRYAG 2 cut(s) 81, 591
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 1568, 1601
BstV2I GAAGAC 1 cut(s) 886
BstX2I RGATCY 2 cut(s) 1564, 1682
BstYI RGATCY 2 cut(s) 1564, 1682
Bsu36I CCTNAGG 1 cut(s) 885
BsuRI GGCC 5 cut(s) 54, 1026, 1347, 1353, 1674
BtgI CCRYGG 1 cut(s) 553
BtsCI GGATG 1 cut(s) 895
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 201, 311, 327
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 81, 1311
Cfr42I CCGCGG 1 cut(s) 556
Csp6I GTAC 5 cut(s) 213, 224, 642, 1548, 1753
CviQI GTAC 5 cut(s) 213, 224, 642, 1548, 1753
DdeI CTNAG 5 cut(s) 300, 885, 1749, 1835, 1857
DpnI GATC 8 cut(s) 516, 776, 1342, 1491, 1566, 1684, 1746, 1824
DpnII GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
DriI GACNNNNNGTC 1 cut(s) 689
EaeI YGGCCR 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 689
EciI GGCGGA 1 cut(s) 1385
Ecl136II GAGCTC 1 cut(s) 1691
Eco130I CCWWGG 1 cut(s) 1348
Eco147I AGGCCT 2 cut(s) 1026, 1353
Eco24I GRGCYC 2 cut(s) 700, 1693
Eco32I GATATC 2 cut(s) 141, 1188
Eco53kI GAGCTC 1 cut(s) 1691
Eco57I CTGAAG 3 cut(s) 225, 1089, 1922
Eco81I CCTNAGG 1 cut(s) 885
Eco91I GGTNACC 2 cut(s) 1113, 1736
EcoICRI GAGCTC 1 cut(s) 1691
EcoO65I GGTNACC 2 cut(s) 1113, 1736
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 49, 724
EcoRV GATATC 2 cut(s) 141, 1188
EcoT14I CCWWGG 1 cut(s) 1348
EcoT22I ATGCAT 2 cut(s) 913, 1930
EcoT38I GRGCYC 2 cut(s) 700, 1693
ErhI CCWWGG 1 cut(s) 1348
Esp3I CGTCTC 1 cut(s) 1844
FalI AAGNNNNNCTT 6 cut(s) 353, 385, 1238, 1270, 1263, 1295
FaqI GGGAC 1 cut(s) 2084
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 1557, 1590, 2001
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 2 cut(s) 700, 1693
Fsp4HI GCNGC 3 cut(s) 1557, 1590, 2001
FspBI CTAG 8 cut(s) 221, 681, 1028, 1166, 1358, 1454, 1593, 1827
GluI GCNGC 3 cut(s) 1557, 1590, 2001
GsuI CTGGAG 2 cut(s) 1572, 1707
HaeIII GGCC 5 cut(s) 54, 1026, 1347, 1353, 1674
HapII CCGG 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 1952
HinfI GANTC 9 cut(s) 71, 296, 392, 441, 587, 854, 977, 1528, 1599
HpaII CCGG 1 cut(s) 694
HphI GGTGA 7 cut(s) 135, 853, 1107, 1249, 1598, 1859, 2135
Hpy166II GTNNAC 4 cut(s) 25, 610, 1623, 1792
Hpy188I TCNGA 7 cut(s) 859, 1073, 1444, 1765, 1786, 1885, 1941
Hpy188III TCNNGA 8 cut(s) 926, 1166, 1338, 1680, 1686, 1694, 1748, 1814
Hpy8I GTNNAC 4 cut(s) 25, 610, 1623, 1792
HpyAV CCTTC 1 cut(s) 832
HpyCH4III ACNGT 5 cut(s) 19, 280, 315, 463, 1430
HpyCH4IV ACGT 2 cut(s) 447, 1509
HpyCH4V TGCA 9 cut(s) 83, 527, 620, 752, 911, 1211, 1589, 1870, 1928
HpyF10VI GCNNNNNNNGC 5 cut(s) 533, 765, 1327, 1661, 1997
HpyF3I CTNAG 5 cut(s) 300, 885, 1749, 1835, 1857
HpySE526I ACGT 2 cut(s) 447, 1509
Ksp22I TGATCA 1 cut(s) 514
KspI CCGCGG 1 cut(s) 556
Kzo9I GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
LmnI GCTCC 6 cut(s) 254, 961, 1003, 1157, 1553, 1688
Lsp1109I GCAGC 2 cut(s) 1568, 1601
LweI GCATC 4 cut(s) 207, 1867, 1978, 2116
MaeI CTAG 8 cut(s) 221, 681, 1028, 1166, 1358, 1454, 1593, 1827
MaeII ACGT 2 cut(s) 447, 1509
MaeIII GTNAC 6 cut(s) 86, 707, 728, 1113, 1424, 1736
MalI GATC 8 cut(s) 516, 776, 1342, 1491, 1566, 1684, 1746, 1824
MbiI CCGCTC 1 cut(s) 1157
MboI GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
MboII GAAGA 9 cut(s) 218, 786, 891, 997, 1195, 1559, 1652, 1802, 1886
MfeI CAATTG 3 cut(s) 1769, 2016, 2111
MflI RGATCY 2 cut(s) 1564, 1682
MhlI GDGCHC 2 cut(s) 700, 1693
MlsI TGGCCA 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 5 cut(s) 386, 435, 596, 863, 986
MmeI TCCRAC 3 cut(s) 430, 983, 1033
Mox20I TGGCCA 1 cut(s) 54
Mph1103I ATGCAT 2 cut(s) 913, 1930
MroXI GAANNNNTTC 2 cut(s) 323, 369
MscI TGGCCA 1 cut(s) 54
MseI TTAA 7 cut(s) 399, 741, 867, 1046, 1418, 1722, 1956
MslI CAYNNNNRTG 5 cut(s) 705, 1295, 1497, 1584, 1611
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 555, 2000
MspI CCGG 1 cut(s) 694
MspR9I CCNGG 3 cut(s) 51, 695, 726
MunI CAATTG 3 cut(s) 1769, 2016, 2111
Mva1269I GAATGC 1 cut(s) 2003
MvaI CCWGG 2 cut(s) 51, 726
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 5 cut(s) 533, 765, 1327, 1661, 1997
NciI CCSGG 1 cut(s) 695
NdeII GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
NlaIV GGNNCC 1 cut(s) 999
NmuCI GTSAC 2 cut(s) 707, 1113
NsiI ATGCAT 2 cut(s) 913, 1930
NspI RCATGY 2 cut(s) 1097, 1709
OliI CACNNNNGTG 3 cut(s) 705, 1295, 1584
PceI AGGCCT 2 cut(s) 1026, 1353
PctI GAATGC 1 cut(s) 2003
PdmI GAANNNNTTC 2 cut(s) 323, 369
PfeI GAWTC 4 cut(s) 71, 296, 1528, 1599
PkrI GCNGC 3 cut(s) 1558, 1591, 2002
PleI GAGTC 5 cut(s) 386, 435, 595, 862, 985
PpsI GAGTC 5 cut(s) 386, 435, 595, 862, 985
PsiI TTATAA 2 cut(s) 1269, 1317
Psp124BI GAGCTC 1 cut(s) 1693
Psp1406I AACGTT 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 49, 724
PspEI GGTNACC 2 cut(s) 1113, 1736
PspGI CCWGG 2 cut(s) 49, 724
PspN4I GGNNCC 1 cut(s) 999
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 1564, 1682
RsaI GTAC 5 cut(s) 214, 225, 643, 1549, 1754
RsaNI GTAC 5 cut(s) 213, 224, 642, 1548, 1753
RseI CAYNNNNRTG 5 cut(s) 705, 1295, 1497, 1584, 1611
SacI GAGCTC 1 cut(s) 1693
SacII CCGCGG 1 cut(s) 556
SaqAI TTAA 7 cut(s) 399, 741, 867, 1046, 1418, 1722, 1956
SatI GCNGC 3 cut(s) 1557, 1590, 2001
Sau3AI GATC 8 cut(s) 514, 774, 1340, 1489, 1564, 1682, 1744, 1822
SbfI CCTGCAGG 1 cut(s) 85
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 5 cut(s) 386, 435, 596, 863, 986
ScrFI CCNGG 3 cut(s) 51, 695, 726
SdaI CCTGCAGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 700, 1693
SfaNI GCATC 4 cut(s) 207, 1867, 1978, 2116
SfcI CTRYAG 2 cut(s) 81, 591
Sfr303I CCGCGG 1 cut(s) 556
SgrBI CCGCGG 1 cut(s) 556
SmiMI CAYNNNNRTG 5 cut(s) 705, 1295, 1497, 1584, 1611
SmlI CTYRAG 1 cut(s) 1814
SmoI CTYRAG 1 cut(s) 1814
SpeI ACTAGT 1 cut(s) 1453
Sse8387I CCTGCAGG 1 cut(s) 85
SseBI AGGCCT 2 cut(s) 1026, 1353
SsiI CCGC 8 cut(s) 553, 555, 766, 1155, 1396, 1402, 1711, 2000
SspI AATATT 1 cut(s) 933
SspMI CTAG 8 cut(s) 221, 681, 1028, 1166, 1358, 1454, 1593, 1827
SstI GAGCTC 1 cut(s) 1693
StuI AGGCCT 2 cut(s) 1026, 1353
StyD4I CCNGG 3 cut(s) 49, 693, 724
StyI CCWWGG 1 cut(s) 1348
TaaI ACNGT 5 cut(s) 19, 280, 315, 463, 1430
TaiI ACGT 2 cut(s) 450, 1512
TaqI TCGA 5 cut(s) 74, 1388, 1679, 1695, 2045
TatI WGTACW 3 cut(s) 641, 1547, 1752
TauI GCSGC 1 cut(s) 2003
TfiI GAWTC 4 cut(s) 71, 296, 1528, 1599
Tru1I TTAA 7 cut(s) 399, 741, 867, 1046, 1418, 1722, 1956
Tru9I TTAA 7 cut(s) 399, 741, 867, 1046, 1418, 1722, 1956
TscAI CASTG 3 cut(s) 208, 318, 334
TseFI GTSAC 2 cut(s) 707, 1113
TseI GCWGC 2 cut(s) 1556, 1589
Tsp45I GTSAC 2 cut(s) 707, 1113
TspDTI ATGAA 8 cut(s) 189, 647, 1212, 1449, 1456, 1559, 1713, 1983
TspRI CASTG 3 cut(s) 208, 318, 334
XapI RAATTY 7 cut(s) 58, 304, 365, 1200, 1361, 1542, 2100
XbaI TCTAGA 1 cut(s) 1165
XceI RCATGY 2 cut(s) 1097, 1709
XcmI CCANNNNNNNNNTGG 2 cut(s) 62, 2117
XmnI GAANNNNTTC 2 cut(s) 323, 369
XspI CTAG 8 cut(s) 221, 681, 1028, 1166, 1358, 1454, 1593, 1827
ZrmI AGTACT 1 cut(s) 643
Zsp2I ATGCAT 2 cut(s) 913, 1930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.