Rorug02G0138800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000413
Physical Location & Seq
Forward (+)
12201672 .. 12203956
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0138800.1

Sequence Viewer

Length: 378 bp
ATGGTACAAAGGACTGTCCTCAGGGTTGATATATCATGCCTAAAATGCAAGAAGAAGATTCTCAAGGCAGTTACTGGCCTAGAAGGTGTGGATAAAATTGAAGTTGATGCAGCCAAGGGAACTTTGACAGTGACAGGAAATGCAGACCCTTATGACATAATAGTCCGGTGCAGAAAAGCCGGCAAGTTTGCCGATGTAGTGACCATCGGGCCTCCTCCGGCTCCACCTAAACCGAAAGAAGATGAGAAAAAGAAGCCAGAGGAGAAGAAACCAGCAGACCAGAAGGTTCCACAAGGTCCCAATTATATGTATCATCCCCACGTTATAATGTTGGAGCCCCCTTGTCATGATCCCAACCCATCCTGCTCTATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

8.95

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 7 - 60 2.6e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AasI GACNNNNNNGTC 1 cut(s) 161
AclWI GGATC 1 cut(s) 344
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 101
AlwI GGATC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 2 cut(s) 76, 209
ApeKI GCWGC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 209, 296
AvaII GGWCC 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 212, 367
BfaI CTAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 209, 296
BmiI GGNNCC 4 cut(s) 222, 288, 298, 336
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 79
Bse21I CCTNAGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 313, 359
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 204, 275
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 2 cut(s) 78, 211
BsiSI CCGG 3 cut(s) 166, 180, 218
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 78, 211
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 349
BspANI GGCC 2 cut(s) 78, 211
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 222, 288, 298, 336
BspPI GGATC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 16, 130
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 313, 359
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 2 cut(s) 78, 211
BtsCI GGATG 2 cut(s) 313, 359
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 74
CciI TCATGA 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 209, 296
Csp6I GTAC 1 cut(s) 5
CviAII CATG 3 cut(s) 36, 347, 373
CviJI RGCY 7 cut(s) 78, 113, 179, 211, 221, 256, 337
CviKI_1 RGCY 7 cut(s) 78, 113, 179, 211, 221, 256, 337
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 39, 350, 376
FaiI YATR 9 cut(s) 32, 37, 153, 158, 306, 308, 326, 348, 374
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 35, 346, 372
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 300, 346
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 80
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 78, 211
HapII CCGG 3 cut(s) 166, 180, 218
Hin1II CATG 3 cut(s) 39, 350, 376
HinfI GANTC 1 cut(s) 58
HpaII CCGG 3 cut(s) 166, 180, 218
Hpy188III TCNNGA 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 77, 277
HpyCH4III ACNGT 2 cut(s) 16, 130
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 48, 110, 143, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 3 cut(s) 39, 350, 376
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 226, 334
LpnPI CCDG 9 cut(s) 7, 60, 120, 179, 193, 231, 270, 285, 293
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 70, 130, 199
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 4 cut(s) 64, 67, 251, 277
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 2 cut(s) 96, 301
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 4 cut(s) 29, 222, 225, 253
MroNI GCCGGC 1 cut(s) 179
MspI CCGG 3 cut(s) 166, 180, 218
MwoI GCNNNNNNNGC 1 cut(s) 45
NaeI GCCGGC 1 cut(s) 181
NdeII GATC 1 cut(s) 349
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 39, 350, 376
NlaIV GGNNCC 4 cut(s) 222, 288, 298, 336
NmuCI GTSAC 2 cut(s) 130, 199
PagI TCATGA 1 cut(s) 346
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 296
PsiI TTATAA 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 296
PspN4I GGNNCC 4 cut(s) 222, 288, 298, 336
PspPI GGNCC 2 cut(s) 209, 296
PspPPI RGGWCCY 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 2 cut(s) 209, 296
SduI GDGCHC 1 cut(s) 339
SetI ASST 5 cut(s) 88, 229, 288, 298, 324
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 96, 301
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 16, 130
TaiI ACGT 1 cut(s) 324
TasI AATT 2 cut(s) 96, 301
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 2 cut(s) 130, 199
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 130, 199
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 296
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.