Rmu_sc0031196.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031196.1
OG0000413
Physical Location & Seq
Reverse (-)
1 .. 963
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031196.1_g000001.1.cds

Sequence Viewer

Length: 930 bp
atggaaaatcctcataattgtagaaccctccatatccttttgttttctcagcttgttcttctccttcagttctcatcccttcactttctctctttagcttatgaactccaagaaaagtatttcgtcaattgtggatcagatgctactgtggacctcaatggtcggaatttcattggggatttgaagcctgattccttctctttctcaaaggaaagtgagactatcaaaggcaccaaccttacgatatcaagtctctaccagacagcaagagttttcagtcaacaatcctactacaagttcgaaatcactgaaaccggtacttatctggtacgcctgcacttctttcccttttcttcggcctcaagaaatctttctactggaatttttaatgtttcagattccaagttcactctgttgaacaatttcactgccaagattaatagtactagcaactctgctattataaaggaattctttcttggaattaatagtaccgactcatttaaactatattttacacctcaagcatcatcttttgcttttgtaaacgccattgaagtcttccttgcaccttcaaatttcacccctgagaatcacaataataatcttcctttacacacaacttaccgagtaaatgttggaggcccagtgctgtcaccagataatgacacaatatggagaaactgggaaacagacgatatttatctgtctgatccaaactctgcgaaggatgtccataaccaaaataccccacttacttatgataataaggatcaagctgatgagtttgttgcatctaataattttattgccccggatttggtttacaagacagctaaagagatgaatagtacaagtagcaggccagccaattcctccaaaataacatggtcatttagtgtgagcaggaatgctacgtacattatccgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

310

Amino Acids

35.06

Weight (kDa)

5.8

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 230
AclWI GGATC 3 cut(s) 142, 707, 780
AcsI RAATTY 4 cut(s) 166, 381, 470, 577
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 6 cut(s) 319, 330, 445, 493, 853, 920
AfiI CCNNNNNNNGG 1 cut(s) 820
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 4 cut(s) 184, 418, 557, 576
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 4 cut(s) 52, 98, 779, 836
AluI AGCT 4 cut(s) 52, 98, 779, 836
Alw26I GTCTC 2 cut(s) 212, 257
AlwI GGATC 3 cut(s) 142, 707, 780
AoxI GGCC 3 cut(s) 357, 643, 863
ApoI RAATTY 4 cut(s) 166, 381, 470, 577
AseI ATTAAT 2 cut(s) 438, 486
AsiGI ACCGGT 1 cut(s) 314
Asp700I GAANNNNTTC 3 cut(s) 370, 422, 474
AspS9I GGNCC 2 cut(s) 151, 644
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 574, 648
AsuII TTCGAA 1 cut(s) 300
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 553
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 2 cut(s) 212, 257
BfaI CTAG 1 cut(s) 447
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 151, 644
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 2 cut(s) 641, 694
BmsI GCATC 3 cut(s) 130, 536, 803
BmuI ACTGGG 2 cut(s) 641, 694
BpiI GAAGAC 1 cut(s) 553
Bpu14I TTCGAA 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 346, 507
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 1 cut(s) 918
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 813
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 382, 647, 689
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 1 cut(s) 813
BseGI GGATG 2 cut(s) 74, 736
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 2 cut(s) 62, 579
BseNI ACTGG 3 cut(s) 382, 647, 689
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 3 cut(s) 359, 645, 865
BshNI GGYRCC 1 cut(s) 230
BshTI ACCGGT 1 cut(s) 314
BsiSI CCGG 2 cut(s) 315, 815
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 2 cut(s) 212, 257
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 3 cut(s) 359, 645, 865
Bsp119I TTCGAA 1 cut(s) 300
Bsp143I GATC 3 cut(s) 134, 712, 772
BspANI GGCC 3 cut(s) 359, 645, 865
BspCNI CTCAG 2 cut(s) 61, 580
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 3 cut(s) 142, 707, 780
BspT104I TTCGAA 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 3 cut(s) 382, 647, 689
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 3 cut(s) 134, 712, 772
Bst4CI ACNGT 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 918
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 335, 863, 867
BstDEI CTNAG 2 cut(s) 48, 588
BstF5I GGATG 2 cut(s) 74, 736
BstKTI GATC 3 cut(s) 137, 715, 775
BstMAI GTCTC 2 cut(s) 212, 257
BstMBI GATC 3 cut(s) 134, 712, 772
BstSCI CCNGG 1 cut(s) 813
BstSNI TACGTA 1 cut(s) 918
BstV2I GAAGAC 1 cut(s) 553
BsuRI GGCC 3 cut(s) 359, 645, 865
BtsCI GGATG 2 cut(s) 74, 736
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 306, 426, 654
Cac8I GCNNGC 3 cut(s) 335, 863, 867
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 151, 644
Csp6I GTAC 6 cut(s) 318, 329, 444, 492, 852, 919
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 1 cut(s) 888
CviJI RGCY 9 cut(s) 52, 98, 187, 359, 645, 779, 836, 865, 869
CviKI_1 RGCY 9 cut(s) 52, 98, 187, 359, 645, 779, 836, 865, 869
CviQI GTAC 6 cut(s) 318, 329, 444, 492, 852, 919
DdeI CTNAG 2 cut(s) 48, 588
DpnI GATC 3 cut(s) 136, 714, 774
DpnII GATC 3 cut(s) 134, 712, 772
DraI TTTAAA 1 cut(s) 505
Eco105I TACGTA 1 cut(s) 918
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 470
EcoRV GATATC 1 cut(s) 246
FaeI CATG 1 cut(s) 891
FaiI YATR 9 cut(s) 15, 33, 102, 464, 511, 676, 738, 762, 889
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 549, 581
FatI CATG 1 cut(s) 887
FokI GGATG 2 cut(s) 61, 743
FspBI CTAG 1 cut(s) 447
HaeIII GGCC 3 cut(s) 359, 645, 865
HapII CCGG 2 cut(s) 315, 815
Hin1II CATG 1 cut(s) 891
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 4 cut(s) 191, 398, 497, 592
HpaII CCGG 2 cut(s) 315, 815
HphI GGTGA 2 cut(s) 574, 648
Hpy166II GTNNAC 5 cut(s) 151, 281, 408, 547, 826
Hpy188I TCNGA 4 cut(s) 139, 165, 397, 712
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 5 cut(s) 151, 281, 408, 547, 826
HpyAV CCTTC 5 cut(s) 74, 89, 205, 582, 721
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 3 cut(s) 337, 569, 794
HpyF3I CTNAG 2 cut(s) 48, 588
HpySE526I ACGT 1 cut(s) 917
Hsp92II CATG 1 cut(s) 891
Kzo9I GATC 3 cut(s) 134, 712, 772
LweI GCATC 3 cut(s) 130, 536, 803
MaeI CTAG 1 cut(s) 447
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 1 cut(s) 654
MalI GATC 3 cut(s) 136, 714, 774
MboI GATC 3 cut(s) 134, 712, 772
MboII GAAGA 4 cut(s) 50, 345, 553, 599
MfeI CAATTG 1 cut(s) 127
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 143, 619
MnlI CCTC 7 cut(s) 21, 38, 164, 370, 531, 635, 886
MroXI GAANNNNTTC 3 cut(s) 370, 422, 474
MseI TTAA 4 cut(s) 387, 438, 486, 504
MspI CCGG 2 cut(s) 315, 815
MspR9I CCNGG 1 cut(s) 815
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 916
NciI CCSGG 1 cut(s) 815
NdeII GATC 3 cut(s) 134, 712, 772
NlaIII CATG 1 cut(s) 891
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 654
NspV TTCGAA 1 cut(s) 300
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 3 cut(s) 370, 422, 474
PfeI GAWTC 3 cut(s) 191, 398, 592
PinAI ACCGGT 1 cut(s) 314
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 918
PshBI ATTAAT 2 cut(s) 438, 486
PsiI TTATAA 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 151, 644
RsaI GTAC 6 cut(s) 319, 330, 445, 493, 853, 920
RsaNI GTAC 6 cut(s) 318, 329, 444, 492, 852, 919
SaqAI TTAA 4 cut(s) 387, 438, 486, 504
Sau3AI GATC 3 cut(s) 134, 712, 772
Sau96I GGNCC 2 cut(s) 151, 644
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 815
SetI ASST 9 cut(s) 54, 100, 156, 240, 523, 574, 781, 838, 920
SfaNI GCATC 3 cut(s) 130, 536, 803
SfuI TTCGAA 1 cut(s) 300
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 2 cut(s) 361, 522
SmoI CTYRAG 2 cut(s) 361, 522
SnaBI TACGTA 1 cut(s) 918
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 920
TaqI TCGA 1 cut(s) 300
TatI WGTACW 2 cut(s) 443, 851
TfiI GAWTC 3 cut(s) 191, 398, 592
Tru1I TTAA 4 cut(s) 387, 438, 486, 504
Tru9I TTAA 4 cut(s) 387, 438, 486, 504
TscAI CASTG 3 cut(s) 313, 433, 654
TseFI GTSAC 1 cut(s) 654
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 3 cut(s) 117, 160, 860
TspGWI ACGGA 1 cut(s) 917
TspRI CASTG 3 cut(s) 313, 433, 654
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 2 cut(s) 438, 486
XapI RAATTY 4 cut(s) 166, 381, 470, 577
XmnI GAANNNNTTC 3 cut(s) 370, 422, 474
XspI CTAG 1 cut(s) 447
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.