RchiOBHm_Chr1g0324321

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
12021743 .. 12023335
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55416

Sequence Viewer

Length: 1593 bp
ATGGAGCATCTTCGTATCCCATTACTCTCTCTGCTTTTTTTTCTCCTCAACCTCTCATCCCTTCACTTTCTCTCTTTAGCTGATGATTATTTCATCAACTGTGGCTCACATGATAATGTGAGCCTCACTGCTGGCCAGAATTTCTCTGGGGAATCGAAGCCTGCAGGTTACTCTTTCTCCAAAAGCAAGGCTGTCAAAGACATCAACCAGTTGCCAGGTATATCACCTCTATATAAGACAGCAAGAAGTTTCAATAAACCATTCTACTACCAGTTCAGCATCACTGAAGATGGTACTTATCTGGTACGCTTACATTTCTCAGCTTTCTCCTCCTCCTCCTCAAATAATCTCTCCACGGCTGTTTTTGGTGTTTTGGATTCTAAGAATTTCACACTGTCGAACAATTTCACCGCCAAGAACACTACCTACTCCCCTGTGATAAAGGAATTCTTTCTCCGAATTGATATTACCGACTCATTTAGATTATATTTTACTCCTCAACCATCATCTTTTGCATTTGTAAATGGCATAGAGTTATTCCTTGCCCCTGCAGATTTCATCACTGAGAACTATGCCAGTAATCTCCCTTTACACACAATTTACAGACTCAACGTTGGAGGCTCACCAGTAAATGACACAATTGGGAGACACTGGGAAACAGATGATAGTCATATTTCTGATCAAAACTCTGCAAAGAAAGCCCCTTTTCAAAATACACTCAATTTAAATTACTTTGGACAAAGGGATGGTTTGGTTGCATCTAATGAGTCTGTAGCCCCACTTCCAGTTTACCAGACTGCTAGAGAGATGATGAATGGCACTAGTAACATAACATGGTTTTTTCGTGTGAGTAGTAAAGCTAGACACATTGTCCGGGCTCACTTCTGTGACATTGTTGGTCAGCCTGGTAACATTATATTTAACTTGTATGCAAATGGCAACTTCCGCAAGGAGATCGGCAACTTTTCTCAATATTCGGCTGTTCCCTTCTACTATGACTTTGTGGTGAATTATAGTGAATCTGAACTCTTTAATATCAGCATAAGACCTAACAATGGTGCTTCGGAACAAAATGCATTTCTAAATGGTCTGGAAATATTGGAGATAGTGGAGGGATTAGCTCCAATTCCCAATGTGAAAGAGTCCAAGAAGAATGTTGTGGCTCCTGTGGTTGGTTCAGTTCTTGGAGGCCTGTCACTCATCTGCGTTTTAATAGTTGGATTTGTGTTCGGTTTCAGACACAGAAAGGTGGAAAAGCGTGTGGAGACTTCAGTTTGGTCACCAATGCCTGCAAATGGAGGAGGGAGTTCTCACAGCTCCGCTCTCAATCTAAATTATCTTGGGTTGAAGATATCTTTCAGTGAAATTCAGTCTGCAACGAACAACTTTGACATAAAGTTGGTGATAGGTAAGGGTGGCTTTGGGAATGTTTATAGAGGCACTCTTTTGAATGGCACAAAAGTGGCTGTGAAGCGAGCTTATAAGCGAGATGAGCATGGGTTAGGATCAGGCCAAGGCCTCCTAGAATTCGAAACAGAAATCATAGTGTTATCGAAAATCTGCCACCGCCATCTTGTCTCCTTAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

530

Amino Acids

58.67

Weight (kDa)

8.63

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 30 - 113 6.7e-07 Malectin domain
Malectin_like PF12819 32 - 368 4.5e-24 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
Acc36I ACCTGC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 1322
AciI CCGC 4 cut(s) 411, 946, 1320, 1567
AclI AACGTT 1 cut(s) 612
AclWI GGATC 1 cut(s) 1513
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 5 cut(s) 139, 385, 446, 1365, 1526
AcuI CTGAAG 2 cut(s) 306, 1254
AfaI GTAC 2 cut(s) 295, 306
AfiI CCNNNNNNNGG 3 cut(s) 1055, 1172, 1295
AgsI TTSAA 4 cut(s) 253, 710, 1348, 1450
AhdI GACNNNNNGTC 1 cut(s) 869
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 2 cut(s) 214, 904
AleI CACNNNNGTG 2 cut(s) 885, 1460
AluBI AGCT 6 cut(s) 80, 323, 860, 1121, 1317, 1478
AluI AGCT 6 cut(s) 80, 323, 860, 1121, 1317, 1478
Alw26I GTCTC 3 cut(s) 640, 1259, 1582
AlwI GGATC 1 cut(s) 1513
AoxI GGCC 4 cut(s) 133, 1189, 1510, 1516
ApoI RAATTY 5 cut(s) 139, 385, 446, 1365, 1526
Asp700I GAANNNNTTC 2 cut(s) 404, 450
AsuC2I CCSGG 1 cut(s) 875
AsuHPI GGTGA 6 cut(s) 216, 400, 615, 1018, 1272, 1414
AsuII TTCGAA 1 cut(s) 1530
BalI TGGCCA 1 cut(s) 135
BanII GRGCYC 1 cut(s) 880
BarI GAAGNNNNNNTAC 2 cut(s) 765, 797
BccI CCATC 4 cut(s) 284, 511, 740, 1578
BceAI ACGGC 1 cut(s) 372
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 2 cut(s) 216, 906
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 1 cut(s) 875
BcoDI GTCTC 3 cut(s) 640, 1259, 1582
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 4 cut(s) 801, 822, 861, 1523
BfmI CTRYAG 3 cut(s) 162, 549, 771
BfuAI ACCTGC 1 cut(s) 155
BfuI GTATCC 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 216, 875, 906
BmeRI GACNNNNNGTC 1 cut(s) 869
BmiI GGNNCC 1 cut(s) 1164
BmrFI CCNGG 3 cut(s) 216, 875, 906
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 3 cut(s) 16, 288, 767
BmuI ACTGGG 1 cut(s) 661
Bpu14I TTCGAA 1 cut(s) 1530
BpuMI CCSGG 1 cut(s) 875
BsaJI CCNNGG 2 cut(s) 354, 1513
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 1055, 1172, 1295
Bse1I ACTGG 6 cut(s) 208, 271, 576, 626, 656, 785
BseBI CCWGG 2 cut(s) 216, 906
BseDI CCNNGG 2 cut(s) 354, 1513
BseGI GGATG 2 cut(s) 56, 751
BseLI CCNNNNNNNGG 3 cut(s) 1055, 1172, 1295
BseMII CTCAG 2 cut(s) 333, 555
BseNI ACTGG 6 cut(s) 208, 271, 576, 626, 656, 785
BseRI GAGGAG 7 cut(s) 35, 319, 322, 325, 328, 486, 1314
BshFI GGCC 4 cut(s) 135, 1191, 1512, 1518
BsiSI CCGG 1 cut(s) 874
BslI CCNNNNNNNGG 3 cut(s) 1055, 1172, 1295
BsmAI GTCTC 3 cut(s) 640, 1259, 1582
BsnI GGCC 4 cut(s) 135, 1191, 1512, 1518
Bsp119I TTCGAA 1 cut(s) 1530
Bsp1286I GDGCHC 1 cut(s) 880
Bsp143I GATC 3 cut(s) 679, 954, 1505
BspACI CCGC 4 cut(s) 411, 946, 1320, 1567
BspANI GGCC 4 cut(s) 135, 1191, 1512, 1518
BspCNI CTCAG 2 cut(s) 332, 556
BspLI GGNNCC 1 cut(s) 1164
BspMAI CTGCAG 2 cut(s) 166, 553
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 1513
BspT104I TTCGAA 1 cut(s) 1530
BsrBI CCGCTC 1 cut(s) 1322
BsrI ACTGG 6 cut(s) 208, 271, 576, 626, 656, 785
BssECI CCNNGG 2 cut(s) 354, 1513
BssMI GATC 3 cut(s) 679, 954, 1505
BssT1I CCWWGG 1 cut(s) 1513
Bst2UI CCWGG 2 cut(s) 216, 906
Bst4CI ACNGT 2 cut(s) 101, 396
BstBI TTCGAA 1 cut(s) 1530
BstC8I GCNNGC 4 cut(s) 133, 162, 1290, 1476
BstDEI CTNAG 3 cut(s) 319, 381, 564
BstDSI CCRYGG 1 cut(s) 354
BstEII GGTNACC 1 cut(s) 1278
BstF5I GGATG 2 cut(s) 56, 751
BstKTI GATC 3 cut(s) 682, 957, 1508
BstMAI GTCTC 3 cut(s) 640, 1259, 1582
BstMBI GATC 3 cut(s) 679, 954, 1505
BstMWI GCNNNNNNNGC 3 cut(s) 698, 945, 1492
BstNI CCWGG 2 cut(s) 216, 906
BstPI GGTNACC 1 cut(s) 1278
BstSCI CCNGG 3 cut(s) 214, 873, 904
BstSFI CTRYAG 3 cut(s) 162, 549, 771
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 4 cut(s) 135, 1191, 1512, 1518
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 56, 751
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 6 cut(s) 126, 282, 392, 561, 649, 1366
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 4 cut(s) 133, 162, 1290, 1476
Csp6I GTAC 2 cut(s) 294, 305
CviAII CATG 3 cut(s) 110, 834, 1496
CviQI GTAC 2 cut(s) 294, 305
DdeI CTNAG 3 cut(s) 319, 381, 564
DpnI GATC 3 cut(s) 681, 956, 1507
DpnII GATC 3 cut(s) 679, 954, 1505
DraI TTTAAA 1 cut(s) 726
DriI GACNNNNNGTC 1 cut(s) 869
EaeI YGGCCR 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 869
Eco130I CCWWGG 1 cut(s) 1513
Eco147I AGGCCT 2 cut(s) 1191, 1518
Eco24I GRGCYC 1 cut(s) 880
Eco32I GATATC 1 cut(s) 1353
Eco57I CTGAAG 2 cut(s) 306, 1254
Eco91I GGTNACC 1 cut(s) 1278
EcoO65I GGTNACC 1 cut(s) 1278
EcoRI GAATTC 2 cut(s) 446, 1526
EcoRII CCWGG 2 cut(s) 214, 904
EcoRV GATATC 1 cut(s) 1353
EcoT14I CCWWGG 1 cut(s) 1513
EcoT22I ATGCAT 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 880
ErhI CCWWGG 1 cut(s) 1513
FaeI CATG 3 cut(s) 113, 837, 1499
FalI AAGNNNNNCTT 4 cut(s) 434, 466, 1403, 1435
FatI CATG 3 cut(s) 109, 833, 1495
FbaI TGATCA 1 cut(s) 679
FokI GGATG 2 cut(s) 43, 758
FriOI GRGCYC 1 cut(s) 880
FspBI CTAG 4 cut(s) 801, 822, 861, 1523
HaeIII GGCC 4 cut(s) 135, 1191, 1512, 1518
HapII CCGG 1 cut(s) 874
Hin1II CATG 3 cut(s) 113, 837, 1499
HinfI GANTC 7 cut(s) 152, 377, 473, 606, 767, 1019, 1142
HpaII CCGG 1 cut(s) 874
HphI GGTGA 6 cut(s) 216, 400, 615, 1018, 1272, 1414
Hpy166II GTNNAC 1 cut(s) 790
Hpy188I TCNGA 5 cut(s) 458, 679, 1024, 1066, 1238
Hpy188III TCNNGA 1 cut(s) 1091
Hpy8I GTNNAC 1 cut(s) 790
HpyAV CCTTC 2 cut(s) 71, 997
HpyCH4III ACNGT 2 cut(s) 101, 396
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 9 cut(s) 164, 515, 551, 692, 758, 932, 1076, 1292, 1376
HpyF10VI GCNNNNNNNGC 3 cut(s) 698, 945, 1492
HpyF3I CTNAG 3 cut(s) 319, 381, 564
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 3 cut(s) 113, 837, 1499
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 3 cut(s) 679, 954, 1505
LmnI GCTCC 4 cut(s) 4, 1126, 1168, 1322
LweI GCATC 3 cut(s) 16, 288, 767
MaeI CTAG 4 cut(s) 801, 822, 861, 1523
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 6 cut(s) 167, 824, 887, 908, 1194, 1278
MalI GATC 3 cut(s) 681, 956, 1507
MbiI CCGCTC 1 cut(s) 1322
MboI GATC 3 cut(s) 679, 954, 1505
MboII GAAGA 3 cut(s) 299, 1162, 1360
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 1 cut(s) 880
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 4 cut(s) 467, 600, 776, 1151
MmeI TCCRAC 2 cut(s) 595, 1198
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 1078
MroXI GAANNNNTTC 2 cut(s) 404, 450
MscI TGGCCA 1 cut(s) 135
MseI TTAA 6 cut(s) 725, 921, 1032, 1211, 1583, 1591
MslI CAYNNNNRTG 3 cut(s) 114, 885, 1460
Msp20I TGGCCA 1 cut(s) 135
MspI CCGG 1 cut(s) 874
MspR9I CCNGG 3 cut(s) 216, 875, 906
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 2 cut(s) 216, 906
MwoI GCNNNNNNNGC 3 cut(s) 698, 945, 1492
NciI CCSGG 1 cut(s) 875
NdeII GATC 3 cut(s) 679, 954, 1505
NlaIII CATG 3 cut(s) 113, 837, 1499
NlaIV GGNNCC 1 cut(s) 1164
NmuCI GTSAC 3 cut(s) 887, 1194, 1278
NsiI ATGCAT 1 cut(s) 1078
NspV TTCGAA 1 cut(s) 1530
OliI CACNNNNGTG 2 cut(s) 885, 1460
PceI AGGCCT 2 cut(s) 1191, 1518
PdmI GAANNNNTTC 2 cut(s) 404, 450
PfeI GAWTC 3 cut(s) 152, 377, 1019
PleI GAGTC 4 cut(s) 467, 600, 775, 1150
PpsI GAGTC 4 cut(s) 467, 600, 775, 1150
PsiI TTATAA 1 cut(s) 1482
Psp1406I AACGTT 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 214, 904
PspEI GGTNACC 1 cut(s) 1278
PspGI CCWGG 2 cut(s) 214, 904
PspN4I GGNNCC 1 cut(s) 1164
PsrI GAACNNNNNNTAC 2 cut(s) 410, 442
PstI CTGCAG 2 cut(s) 166, 553
RsaI GTAC 2 cut(s) 295, 306
RsaNI GTAC 2 cut(s) 294, 305
RseI CAYNNNNRTG 3 cut(s) 114, 885, 1460
SaqAI TTAA 6 cut(s) 725, 921, 1032, 1211, 1583, 1591
Sau3AI GATC 3 cut(s) 679, 954, 1505
SbfI CCTGCAGG 1 cut(s) 166
SchI GAGTC 4 cut(s) 467, 600, 776, 1151
ScrFI CCNGG 3 cut(s) 216, 875, 906
SdaI CCTGCAGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 880
SfaNI GCATC 3 cut(s) 16, 288, 767
SfcI CTRYAG 3 cut(s) 162, 549, 771
SfuI TTCGAA 1 cut(s) 1530
SmiI ATTTAAAT 1 cut(s) 726
SmiMI CAYNNNNRTG 3 cut(s) 114, 885, 1460
SpeI ACTAGT 1 cut(s) 821
Sse8387I CCTGCAGG 1 cut(s) 166
SseBI AGGCCT 2 cut(s) 1191, 1518
SsiI CCGC 4 cut(s) 411, 946, 1320, 1567
SspI AATATT 2 cut(s) 974, 1098
SspMI CTAG 4 cut(s) 801, 822, 861, 1523
StuI AGGCCT 2 cut(s) 1191, 1518
StyD4I CCNGG 3 cut(s) 214, 873, 904
StyI CCWWGG 1 cut(s) 1513
SwaI ATTTAAAT 1 cut(s) 726
TaaI ACNGT 2 cut(s) 101, 396
TaiI ACGT 1 cut(s) 615
TaqI TCGA 4 cut(s) 155, 398, 1530, 1553
TfiI GAWTC 3 cut(s) 152, 377, 1019
Tru1I TTAA 6 cut(s) 725, 921, 1032, 1211, 1583, 1591
Tru9I TTAA 6 cut(s) 725, 921, 1032, 1211, 1583, 1591
TscAI CASTG 6 cut(s) 133, 289, 399, 568, 656, 1366
TseFI GTSAC 3 cut(s) 887, 1194, 1278
Tsp45I GTSAC 3 cut(s) 887, 1194, 1278
TspDTI ATGAA 3 cut(s) 82, 547, 827
TspRI CASTG 6 cut(s) 133, 289, 399, 568, 656, 1366
XapI RAATTY 5 cut(s) 139, 385, 446, 1365, 1526
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 404, 450
XspI CTAG 4 cut(s) 801, 822, 861, 1523
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.