Prupe.6G228000_v2.0.a1

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000413
Physical Location & Seq
Forward (+)
23202754 .. 23204205
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G228000.1

Sequence Viewer

Length: 1314 bp
ATGAAATGGCCCAATAAGATAAAGGTAGGTCTTGTGGTTGGTTCAGTTATTGGAGGCCTGTCACTTATCTGCATTCTGATTGTCGGAATCTTGTTCTTTTTGAAATACAGAAAGGCAAAGCGTGTTGAAACTTCGGAATGGTCACCAATGCCTGCATTTGGAGGAGGGAGTACCCACAGCTGGTTGACTGAGGGAACTATTACTGGTTCCCCTATGAATTATCTAAATCTTGGGTTGAAGATATCTTTTGCTGAACTTCAGCAAGCAACAAACAACTTTGACACAAAATTGTTGACAGGTGAGGGTGGCTTTGGTAATGTCTACAGAGGAACTCTGTTGAATGACAGAAATGTAGCTGTCAAGCGAGGTAAACGAGATGAGCAAGGGTCAGGCCAAGGCCTTCCAGAATTTCAAACAGAGATCACGGTTTTGTCCAAGATTCGCCACCGCCATCTTGTTTCCTTTATTGGATACTGTGATGAAAGGTCTGAGATGATACTGGTCTACGAGTTCATGGAAAAAGGGAGCTTGAGAGATCATTTATATGATTCAAACTTGCCTCGCTTGTCATGGAAGCAAAGGCTTGAAATTTGCATTGGTGCAGCAAGGGGTCTTCATTACCTCCACAAAGGCGCAGCTGGGGGAATCATTCACCGTGATATTAAGTCCACCAACATCTTGTTGGATGAAAACCATGTTGCCAAAGTTGCTGACTTTGGCCTTTCAAGATCTGGTCCTCTTGATGAAACACATGTCAGCACAAATGTTAAAGGCACTTTTGGTTACCTTGATCCTGAATACATAATGTCCCAACAGTTGACAGAAAAATCTGATGTTTACTCATTCGGCGTGGTTCTCCTTGAGGTGTTATGTGCAAGACCTGCTATTGATAGAATGCTCCCAAGAGACCAAATGAATTTAGCTGAATGGGGAATGCTTTGCAAGAAGAAAGGGTTGCTTGAACAGATTGTTGACTCTTCAATCAAGAATCAGATTGATCCTAGCTCATTAAGAAAATTTAGTGAGACAGCAGAGAAATGCTTGCAAGAAGATGCTAATGATAGGCCTACAATGGGTGATGTGCTGTGGGACTTGGAGTATGCATTCCAGCTCCAGCAAACAGTAAAGCATAGGGAACCCCATGAAGATAGCACAGCCAATGCTTCATCAGCATTTGTATTGCCAAATATTCCGTGTTTTCCTTCAGTTAGCTCCACCATTAACACAGATGATCTGGCCCTTCCCAGAGACGATGAATTAGATACAACAGAAGTTGAAGTTTTCTCCCAGTTGAGAGTTGGTGATGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

438

Amino Acids

48.8

Weight (kDa)

5.93

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 889
AccI GTMKAC 2 cut(s) 321, 504
AciI CCGC 1 cut(s) 448
AclWI GGATC 2 cut(s) 785, 992
AcsI RAATTY 4 cut(s) 407, 588, 916, 1016
AcuI CTGAAG 2 cut(s) 242, 1188
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 3 cut(s) 158, 180, 1073
AflIII ACRYGT 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 8 cut(s) 180, 356, 528, 638, 923, 1005, 1111, 1212
AluI AGCT 8 cut(s) 180, 356, 528, 638, 923, 1005, 1111, 1212
Alw26I GTCTC 3 cut(s) 900, 1019, 1242
AlwI GGATC 2 cut(s) 785, 992
AoxI GGCC 7 cut(s) 8, 55, 391, 397, 718, 1064, 1236
ApeKI GCWGC 2 cut(s) 602, 635
ApoI RAATTY 4 cut(s) 407, 588, 916, 1016
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 3 cut(s) 9, 734, 1237
AsuHPI GGTGA 5 cut(s) 135, 311, 644, 1088, 1313
AvaII GGWCC 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 614, 647
BccI CCATC 1 cut(s) 459
BciVI GTATCC 1 cut(s) 464
BcoDI GTCTC 3 cut(s) 900, 1019, 1242
BfaI CTAG 1 cut(s) 1002
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 889
BfuI GTATCC 1 cut(s) 464
BglII AGATCT 1 cut(s) 728
BisI GCNGC 2 cut(s) 603, 636
BlsI GCNGC 2 cut(s) 604, 637
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 3 cut(s) 9, 734, 1237
BmiI GGNNCC 2 cut(s) 208, 1137
BmrI ACTGGG 1 cut(s) 1282
BmsI GCATC 2 cut(s) 1042, 1294
BmuI ACTGGG 1 cut(s) 1282
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 1097
BpuEI CTTGAG 2 cut(s) 550, 881
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 180, 1073
Bse1I ACTGG 3 cut(s) 208, 504, 1288
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 691
BseLI CCNNNNNNNGG 3 cut(s) 158, 180, 1073
BseMII CTCAG 2 cut(s) 180, 480
BseNI ACTGG 3 cut(s) 208, 504, 1288
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 614, 647
BseYI CCCAGC 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 7 cut(s) 10, 57, 393, 399, 720, 1066, 1238
BslFI GGGAC 2 cut(s) 793, 1103
BslI CCNNNNNNNGG 3 cut(s) 158, 180, 1073
BsmAI GTCTC 3 cut(s) 900, 1019, 1242
BsmBI CGTCTC 1 cut(s) 1242
BsmFI GGGAC 2 cut(s) 793, 1103
BsmI GAATGC 4 cut(s) 72, 900, 939, 1103
BsnI GGCC 7 cut(s) 10, 57, 393, 399, 720, 1066, 1238
Bso31I GGTCTC 1 cut(s) 900
Bsp143I GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
BspACI CCGC 1 cut(s) 448
BspANI GGCC 7 cut(s) 10, 57, 393, 399, 720, 1066, 1238
BspCNI CTCAG 2 cut(s) 181, 481
BspLI GGNNCC 2 cut(s) 208, 1137
BspMI ACCTGC 1 cut(s) 889
BspPI GGATC 2 cut(s) 785, 992
BspTNI GGTCTC 1 cut(s) 900
BsrI ACTGG 3 cut(s) 208, 504, 1288
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
BssT1I CCWWGG 1 cut(s) 394
Bst4CI ACNGT 5 cut(s) 427, 476, 656, 816, 1123
Bst6I CTCTTC 1 cut(s) 982
BstAPI GCANNNNNTGC 1 cut(s) 881
BstC8I GCNNGC 3 cut(s) 153, 264, 1043
BstDEI CTNAG 2 cut(s) 189, 489
BstEII GGTNACC 2 cut(s) 141, 782
BstF5I GGATG 1 cut(s) 691
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 6 cut(s) 423, 538, 731, 793, 1000, 1234
BstMAI GTCTC 3 cut(s) 900, 1019, 1242
BstMBI GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 707, 881, 1169
BstNSI RCATGY 1 cut(s) 755
BstPI GGTNACC 2 cut(s) 141, 782
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 614, 647
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 728
BstYI RGATCY 1 cut(s) 728
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 7 cut(s) 10, 57, 393, 399, 720, 1066, 1238
BtsCI GGATG 1 cut(s) 691
BveI ACCTGC 1 cut(s) 889
Cac8I GCNNGC 3 cut(s) 153, 264, 1043
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 9, 734, 1237
Csp6I GTAC 1 cut(s) 171
CviAII CATG 5 cut(s) 514, 570, 695, 752, 1142
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 2 cut(s) 189, 489
DpnI GATC 6 cut(s) 422, 537, 730, 792, 999, 1233
DpnII GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
Eam1104I CTCTTC 1 cut(s) 982
EarI CTCTTC 1 cut(s) 982
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 3 cut(s) 57, 399, 1066
Eco31I GGTCTC 1 cut(s) 900
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 242, 1188
Eco91I GGTNACC 2 cut(s) 141, 782
EcoO65I GGTNACC 2 cut(s) 141, 782
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 1105
ErhI CCWWGG 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 1242
FaeI CATG 5 cut(s) 517, 573, 698, 755, 1145
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 2 cut(s) 793, 1103
FatI CATG 5 cut(s) 513, 569, 694, 751, 1141
FblI GTMKAC 2 cut(s) 321, 504
Fnu4HI GCNGC 2 cut(s) 603, 636
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 603, 636
FspBI CTAG 1 cut(s) 1002
GlaI GCGC 1 cut(s) 634
GluI GCNGC 2 cut(s) 603, 636
GsaI CCCAGC 1 cut(s) 642
GsuI CTGGAG 1 cut(s) 1097
HaeIII GGCC 7 cut(s) 10, 57, 393, 399, 720, 1066, 1238
HhaI GCGC 1 cut(s) 635
Hin1II CATG 5 cut(s) 517, 573, 698, 755, 1145
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 4 cut(s) 186, 294, 819, 973
HindII GTYRAC 4 cut(s) 186, 294, 819, 973
HinfI GANTC 6 cut(s) 87, 439, 548, 645, 974, 988
HphI GGTGA 5 cut(s) 135, 311, 644, 1088, 1313
Hpy166II GTNNAC 9 cut(s) 186, 294, 322, 371, 505, 669, 819, 838, 973
Hpy188I TCNGA 6 cut(s) 78, 86, 136, 490, 832, 993
Hpy188III TCNNGA 5 cut(s) 404, 726, 740, 794, 985
Hpy8I GTNNAC 9 cut(s) 186, 294, 322, 371, 505, 669, 819, 838, 973
HpyAV CCTTC 3 cut(s) 410, 1212, 1250
HpyCH4III ACNGT 5 cut(s) 427, 476, 656, 816, 1123
HpyCH4V TGCA 8 cut(s) 72, 155, 594, 602, 875, 942, 1045, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 707, 881, 1169
HpyF3I CTNAG 2 cut(s) 189, 489
Hsp92II CATG 5 cut(s) 517, 573, 698, 755, 1145
HspAI GCGC 1 cut(s) 633
Kzo9I GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
LmnI GCTCC 4 cut(s) 525, 903, 1116, 1217
Lsp1109I GCAGC 2 cut(s) 614, 647
LweI GCATC 2 cut(s) 1042, 1294
MaeI CTAG 1 cut(s) 1002
MaeIII GTNAC 3 cut(s) 60, 141, 782
MalI GATC 6 cut(s) 422, 537, 730, 792, 999, 1233
MboI GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
MboII GAAGA 6 cut(s) 250, 605, 958, 969, 1061, 1157
MflI RGATCY 1 cut(s) 728
MluCI AATT 7 cut(s) 217, 287, 407, 588, 916, 1016, 1256
MlyI GAGTC 1 cut(s) 968
MmeI TCCRAC 2 cut(s) 64, 663
Mph1103I ATGCAT 1 cut(s) 1105
MseI TTAA 4 cut(s) 663, 768, 1010, 1221
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 2 cut(s) 180, 638
Mva1269I GAATGC 4 cut(s) 72, 900, 939, 1103
MwoI GCNNNNNNNGC 3 cut(s) 707, 881, 1169
NdeII GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
NlaIII CATG 5 cut(s) 517, 573, 698, 755, 1145
NlaIV GGNNCC 2 cut(s) 208, 1137
NmuCI GTSAC 2 cut(s) 60, 141
NsiI ATGCAT 1 cut(s) 1105
NspI RCATGY 1 cut(s) 755
PceI AGGCCT 3 cut(s) 57, 399, 1066
PciI ACATGT 1 cut(s) 751
PctI GAATGC 4 cut(s) 72, 900, 939, 1103
PfeI GAWTC 5 cut(s) 87, 439, 548, 645, 988
PkrI GCNGC 2 cut(s) 604, 637
PleI GAGTC 1 cut(s) 968
PpsI GAGTC 1 cut(s) 968
PscI ACATGT 1 cut(s) 751
PspEI GGTNACC 2 cut(s) 141, 782
PspFI CCCAGC 1 cut(s) 638
PspN4I GGNNCC 2 cut(s) 208, 1137
PspPI GGNCC 3 cut(s) 9, 734, 1237
PsuI RGATCY 1 cut(s) 728
PvuII CAGCTG 2 cut(s) 180, 638
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 4 cut(s) 663, 768, 1010, 1221
SatI GCNGC 2 cut(s) 603, 636
Sau3AI GATC 6 cut(s) 420, 535, 728, 790, 997, 1231
Sau96I GGNCC 3 cut(s) 9, 734, 1237
SchI GAGTC 1 cut(s) 968
SfaNI GCATC 2 cut(s) 1042, 1294
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 529, 860
SmoI CTYRAG 2 cut(s) 529, 860
Sse9I AATT 7 cut(s) 217, 287, 407, 588, 916, 1016, 1256
SseBI AGGCCT 3 cut(s) 57, 399, 1066
SsiI CCGC 1 cut(s) 448
SspI AATATT 1 cut(s) 1189
SspMI CTAG 1 cut(s) 1002
StuI AGGCCT 3 cut(s) 57, 399, 1066
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 5 cut(s) 427, 476, 656, 816, 1123
TasI AATT 7 cut(s) 217, 287, 407, 588, 916, 1016, 1256
TfiI GAWTC 5 cut(s) 87, 439, 548, 645, 988
Tru1I TTAA 4 cut(s) 663, 768, 1010, 1221
Tru9I TTAA 4 cut(s) 663, 768, 1010, 1221
TseFI GTSAC 2 cut(s) 60, 141
TseI GCWGC 2 cut(s) 602, 635
Tsp45I GTSAC 2 cut(s) 60, 141
TspGWI ACGGA 1 cut(s) 1182
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 4 cut(s) 407, 588, 916, 1016
XceI RCATGY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 2 cut(s) 679, 1295
XmiI GTMKAC 2 cut(s) 321, 504
XspI CTAG 1 cut(s) 1002
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.