RchiOBHm_Chr1g0324331

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000413
Physical Location & Seq
Forward (+)
12023354 .. 12024151
798 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55417

Sequence Viewer

Length: 798 bp
ATGATACTAGTGTATGAGTTCATGGAAAAAGGGACGTTGAGAGATCATTTGTATGATTCAGACGTGCCTCGCTTGTCGTGGAATCAAAGACTTGAAATTTGTACTGGAGCAGCAAGGGGTCTTCATTATCTCCACACAGGTGCAGCTAGGGGAATCATTCACCGAGATGTCAAGTCCACCAACATATTGCTTGATGAAAACCATGTTGCCAAAGTTGCTGACTTTGGCCTTTCGAGATCTGGAGCTCTCGATGAAACGCATGTCAGCACTAATGTTAAAGGCACTTTTGGTTACCTTGATCCTGAGTACATGATGTCTGAACAATTGACAGCAAAATCTGACGTTTACTCATTTGGTGTAGTTCTTCTTGAGGTGTTATGTGGAAGACCTGCTATTGATCCAACGCTTCCAAGAGAGCAAACGAACTTGGCTGAATGGGGAATGCTTTGCAAGAAAAAAGGGTTGCTTGAACAGATTGTTGATTCTTCATTGAAAAATCAGATTGATCCTAGCTCACTAAGAACTTTTGGTGAGACGGCTGAGAAGTGTTTGCAAGATGATGCTTCTGATAGGCCAACAATGGCCGATGTGCTGTGGGATTTGGAATATGCATTACAGCTTCAGAAAACAACTAAGCTTAAAGAGGCTCATGAGGACAGCACCACCATTGATGCTTCATCAGCAGCATTCAGTTTGCCAATTGTTCAGCGTTTTCCTTCACTTGGTTCGACAACAAATGGAGACGATATGAGGGACAGCGACTTGGACACAACAGAAAACAAATTTTCTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

265

Amino Acids

29.49

Weight (kDa)

4.89

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 198 5e-32 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 199 1.4e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AclWI GGATC 3 cut(s) 293, 392, 500
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 2 cut(s) 96, 782
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 2 cut(s) 103, 308
AfiI CCNNNNNNNGG 1 cut(s) 722
AgsI TTSAA 3 cut(s) 95, 470, 493
AhlI ACTAGT 1 cut(s) 7
AjiI CACGTC 1 cut(s) 64
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 5 cut(s) 146, 245, 513, 619, 637
AluI AGCT 5 cut(s) 146, 245, 513, 619, 637
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 527, 735
AlwI GGATC 3 cut(s) 293, 392, 500
AoxI GGCC 3 cut(s) 226, 572, 582
ApeKI GCWGC 3 cut(s) 110, 143, 683
ApoI RAATTY 2 cut(s) 96, 782
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AsuHPI GGTGA 2 cut(s) 152, 542
BaeI ACNNNNGTAYC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 113, 391
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 3 cut(s) 122, 155, 695
BceAI ACGGC 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 527, 735
BcuI ACTAGT 1 cut(s) 7
BfaI CTAG 3 cut(s) 8, 147, 510
BfuAI ACCTGC 1 cut(s) 397
BglII AGATCT 1 cut(s) 236
BisI GCNGC 3 cut(s) 111, 144, 684
BlsI GCNGC 3 cut(s) 112, 145, 685
BmgBI CACGTC 1 cut(s) 64
BmsI GCATC 2 cut(s) 550, 661
BpiI GAAGAC 2 cut(s) 113, 391
BpmI CTGGAG 2 cut(s) 126, 261
BpuEI CTTGAG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse1I ACTGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMII CTCAG 2 cut(s) 294, 531
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 122, 155, 695
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 3 cut(s) 228, 574, 584
BsiHKAI GWGCWC 1 cut(s) 247
BslFI GGGAC 2 cut(s) 46, 767
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 2 cut(s) 527, 735
BsmBI CGTCTC 2 cut(s) 527, 735
BsmFI GGGAC 2 cut(s) 46, 767
BsmI GAATGC 2 cut(s) 447, 686
BsnI GGCC 3 cut(s) 228, 574, 584
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 5 cut(s) 43, 236, 298, 397, 505
BspANI GGCC 3 cut(s) 228, 574, 584
BspCNI CTCAG 2 cut(s) 295, 532
BspHI TCATGA 1 cut(s) 649
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 3 cut(s) 293, 392, 500
BsrI ACTGG 1 cut(s) 109
BssMI GATC 5 cut(s) 43, 236, 298, 397, 505
BstDEI CTNAG 4 cut(s) 303, 518, 540, 633
BstEII GGTNACC 1 cut(s) 290
BstKTI GATC 5 cut(s) 46, 239, 301, 400, 508
BstMAI GTCTC 2 cut(s) 527, 735
BstMBI GATC 5 cut(s) 43, 236, 298, 397, 505
BstMWI GCNNNNNNNGC 2 cut(s) 215, 680
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 122, 155, 695
BstV2I GAAGAC 2 cut(s) 113, 391
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 3 cut(s) 228, 574, 584
BtrI CACGTC 1 cut(s) 64
BveI ACCTGC 1 cut(s) 397
CciI TCATGA 1 cut(s) 649
Csp6I GTAC 2 cut(s) 102, 307
CviAII CATG 5 cut(s) 22, 203, 260, 310, 650
CviQI GTAC 2 cut(s) 102, 307
DdeI CTNAG 4 cut(s) 303, 518, 540, 633
DpnI GATC 5 cut(s) 45, 238, 300, 399, 507
DpnII GATC 5 cut(s) 43, 236, 298, 397, 505
EaeI YGGCCR 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 605
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 247
Esp3I CGTCTC 2 cut(s) 527, 735
FaeI CATG 5 cut(s) 25, 206, 263, 313, 653
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 46, 767
FatI CATG 5 cut(s) 21, 202, 259, 309, 649
Fnu4HI GCNGC 3 cut(s) 111, 144, 684
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 3 cut(s) 111, 144, 684
FspBI CTAG 3 cut(s) 8, 147, 510
GluI GCNGC 3 cut(s) 111, 144, 684
GsuI CTGGAG 2 cut(s) 126, 261
HaeIII GGCC 3 cut(s) 228, 574, 584
Hin1II CATG 5 cut(s) 25, 206, 263, 313, 653
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 4 cut(s) 56, 82, 153, 482
HphI GGTGA 2 cut(s) 152, 542
Hpy166II GTNNAC 2 cut(s) 177, 346
Hpy188I TCNGA 6 cut(s) 61, 319, 340, 501, 568, 624
Hpy188III TCNNGA 6 cut(s) 234, 240, 248, 302, 368, 650
Hpy8I GTNNAC 2 cut(s) 177, 346
HpyAV CCTTC 1 cut(s) 726
HpyCH4IV ACGT 3 cut(s) 35, 63, 342
HpyCH4V TGCA 4 cut(s) 143, 450, 553, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 680
HpyF3I CTNAG 4 cut(s) 303, 518, 540, 633
HpySE526I ACGT 3 cut(s) 35, 63, 342
Hsp92II CATG 5 cut(s) 25, 206, 263, 313, 653
Kzo9I GATC 5 cut(s) 43, 236, 298, 397, 505
LmnI GCTCC 2 cut(s) 107, 242
LpnPI CCDG 5 cut(s) 90, 123, 225, 315, 402
Lsp1109I GCAGC 3 cut(s) 122, 155, 695
LweI GCATC 2 cut(s) 550, 661
MaeI CTAG 3 cut(s) 8, 147, 510
MaeII ACGT 3 cut(s) 35, 63, 342
MaeIII GTNAC 1 cut(s) 290
MalI GATC 5 cut(s) 45, 238, 300, 399, 507
MboI GATC 5 cut(s) 43, 236, 298, 397, 505
MboII GAAGA 4 cut(s) 113, 356, 396, 477
MfeI CAATTG 3 cut(s) 323, 699, 793
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 5 cut(s) 96, 323, 699, 782, 793
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 5 cut(s) 78, 364, 637, 646, 744
Mph1103I ATGCAT 1 cut(s) 613
MseI TTAA 2 cut(s) 276, 639
MslI CAYNNNNRTG 3 cut(s) 51, 138, 165
MunI CAATTG 3 cut(s) 323, 699, 793
Mva1269I GAATGC 2 cut(s) 447, 686
MwoI GCNNNNNNNGC 2 cut(s) 215, 680
NdeII GATC 5 cut(s) 43, 236, 298, 397, 505
NlaIII CATG 5 cut(s) 25, 206, 263, 313, 653
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 263
OliI CACNNNNGTG 1 cut(s) 138
PagI TCATGA 1 cut(s) 649
PctI GAATGC 2 cut(s) 447, 686
PfeI GAWTC 4 cut(s) 56, 82, 153, 482
PkrI GCNGC 3 cut(s) 112, 145, 685
Psp124BI GAGCTC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 2 cut(s) 103, 308
RsaNI GTAC 2 cut(s) 102, 307
RseI CAYNNNNRTG 3 cut(s) 51, 138, 165
SacI GAGCTC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 276, 639
SatI GCNGC 3 cut(s) 111, 144, 684
Sau3AI GATC 5 cut(s) 43, 236, 298, 397, 505
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 2 cut(s) 550, 661
SmiMI CAYNNNNRTG 3 cut(s) 51, 138, 165
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 7
Sse9I AATT 5 cut(s) 96, 323, 699, 782, 793
SspMI CTAG 3 cut(s) 8, 147, 510
SstI GAGCTC 1 cut(s) 247
TaiI ACGT 3 cut(s) 38, 66, 345
TaqI TCGA 3 cut(s) 233, 249, 728
TasI AATT 5 cut(s) 96, 323, 699, 782, 793
TatI WGTACW 2 cut(s) 101, 306
TfiI GAWTC 4 cut(s) 56, 82, 153, 482
Tru1I TTAA 2 cut(s) 276, 639
Tru9I TTAA 2 cut(s) 276, 639
TseI GCWGC 3 cut(s) 110, 143, 683
TspDTI ATGAA 6 cut(s) 10, 113, 210, 267, 477, 666
XapI RAATTY 2 cut(s) 96, 782
XceI RCATGY 1 cut(s) 263
XspI CTAG 3 cut(s) 8, 147, 510
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.