Rmu_sc0039591.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039591.1
OG0000413
Physical Location & Seq
Reverse (-)
2 .. 549
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039591.1_g000001.1.cds

Sequence Viewer

Length: 548 bp
atggaaaaagggacgttgagagatcatttgtatgattcagacgtgcctcgcttgtcatggaatcaaagacttgaaatttgtactggagcagcaaggggtcttcattatctccacacaagtgcagctaggggaatcattcaccgagatgtcaagtccaccaacatattgcttgatgaaaaccatgttgccaaagttgctgactttggcctttcgagatctggagctctcgatgaaacgcatgtcagcactaatgttaaaggcacttttggttaccttgatcctgagtacatgatgtctgaacaattgacagaaaaatctgatgtttactcatttggtgtagttcttcttgaggttttatgtggaagacctgctattgatccaacgcttccaagagagcaaatgaacttggctgaatggggaatgctttgcaagaaaaaagggttgcttgaacagattgttgattcttcattgaaaaatcagattgatcctagctcactaagaacttttggtgagacggctgagaagtgtttgcaagatgatgcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

5.35

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AclWI GGATC 3 cut(s) 272, 371, 479
AcsI RAATTY 1 cut(s) 75
AfaI GTAC 2 cut(s) 82, 287
AgsI TTSAA 3 cut(s) 74, 449, 472
AjiI CACGTC 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 3 cut(s) 125, 224, 492
AluI AGCT 3 cut(s) 125, 224, 492
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 3 cut(s) 272, 371, 479
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 89, 122
ApoI RAATTY 1 cut(s) 75
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AsuHPI GGTGA 2 cut(s) 131, 521
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 92, 370
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 101, 134
BceAI ACGGC 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 2 cut(s) 126, 489
BfuAI ACCTGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 215
BisI GCNGC 2 cut(s) 90, 123
BlsI GCNGC 2 cut(s) 91, 124
BmgBI CACGTC 1 cut(s) 43
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 2 cut(s) 92, 370
BpmI CTGGAG 2 cut(s) 105, 240
BpuEI CTTGAG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 273, 510
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 101, 134
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 226
BslFI GGGAC 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 5 cut(s) 22, 215, 277, 376, 484
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 274, 511
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 272, 371, 479
BsrI ACTGG 1 cut(s) 88
BssMI GATC 5 cut(s) 22, 215, 277, 376, 484
BstDEI CTNAG 3 cut(s) 282, 497, 519
BstEII GGTNACC 1 cut(s) 269
BstKTI GATC 5 cut(s) 25, 218, 280, 379, 487
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 5 cut(s) 22, 215, 277, 376, 484
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 101, 134
BstV2I GAAGAC 2 cut(s) 92, 370
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 1 cut(s) 207
BtrI CACGTC 1 cut(s) 43
BveI ACCTGC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 81, 286
CviAII CATG 4 cut(s) 57, 182, 239, 289
CviJI RGCY 6 cut(s) 125, 207, 224, 410, 492, 518
CviKI_1 RGCY 6 cut(s) 125, 207, 224, 410, 492, 518
CviQI GTAC 2 cut(s) 81, 286
DdeI CTNAG 3 cut(s) 282, 497, 519
DpnI GATC 5 cut(s) 24, 217, 279, 378, 486
DpnII GATC 5 cut(s) 22, 215, 277, 376, 484
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 4 cut(s) 60, 185, 242, 292
FaiI YATR 7 cut(s) 33, 58, 164, 183, 240, 290, 358
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 25
FatI CATG 4 cut(s) 56, 181, 238, 288
Fnu4HI GCNGC 2 cut(s) 90, 123
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 90, 123
FspBI CTAG 2 cut(s) 126, 489
GluI GCNGC 2 cut(s) 90, 123
GsuI CTGGAG 2 cut(s) 105, 240
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 4 cut(s) 60, 185, 242, 292
HinfI GANTC 4 cut(s) 35, 61, 132, 461
HphI GGTGA 2 cut(s) 131, 521
Hpy166II GTNNAC 2 cut(s) 156, 325
Hpy188I TCNGA 5 cut(s) 40, 298, 319, 480, 547
Hpy188III TCNNGA 5 cut(s) 213, 219, 227, 281, 347
Hpy8I GTNNAC 2 cut(s) 156, 325
HpyCH4IV ACGT 2 cut(s) 14, 42
HpyCH4V TGCA 3 cut(s) 122, 429, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 3 cut(s) 282, 497, 519
HpySE526I ACGT 2 cut(s) 14, 42
Hsp92II CATG 4 cut(s) 60, 185, 242, 292
Kzo9I GATC 5 cut(s) 22, 215, 277, 376, 484
LmnI GCTCC 2 cut(s) 86, 221
LpnPI CCDG 4 cut(s) 69, 204, 294, 381
Lsp1109I GCAGC 2 cut(s) 101, 134
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 126, 489
MaeII ACGT 2 cut(s) 14, 42
MaeIII GTNAC 1 cut(s) 269
MalI GATC 5 cut(s) 24, 217, 279, 378, 486
MboI GATC 5 cut(s) 22, 215, 277, 376, 484
MboII GAAGA 4 cut(s) 92, 335, 375, 456
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 2 cut(s) 75, 302
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 2 cut(s) 57, 343
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 3 cut(s) 30, 117, 144
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 5 cut(s) 22, 215, 277, 376, 484
NlaIII CATG 4 cut(s) 60, 185, 242, 292
NspI RCATGY 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 117
PctI GAATGC 1 cut(s) 426
PfeI GAWTC 4 cut(s) 35, 61, 132, 461
PkrI GCNGC 2 cut(s) 91, 124
Psp124BI GAGCTC 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 82, 287
RsaNI GTAC 2 cut(s) 81, 286
RseI CAYNNNNRTG 3 cut(s) 30, 117, 144
SacI GAGCTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 90, 123
Sau3AI GATC 5 cut(s) 22, 215, 277, 376, 484
SduI GDGCHC 1 cut(s) 226
SetI ASST 8 cut(s) 17, 45, 127, 226, 276, 354, 370, 494
SfaNI GCATC 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 30, 117, 144
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 75, 302
SspMI CTAG 2 cut(s) 126, 489
SstI GAGCTC 1 cut(s) 226
TaiI ACGT 2 cut(s) 17, 45
TaqI TCGA 2 cut(s) 212, 228
TasI AATT 2 cut(s) 75, 302
TatI WGTACW 2 cut(s) 80, 285
TfiI GAWTC 4 cut(s) 35, 61, 132, 461
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 2 cut(s) 89, 122
TspDTI ATGAA 5 cut(s) 92, 189, 246, 416, 456
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 126, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.