RchiOBHm_Chr2g0106781

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
18168910 .. 18169464
555 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48085

Sequence Viewer

Length: 555 bp
ATGTCAGCACCAATGTTAAAAGGCACTTTTGGTTATCTTGATCCAGAGTACATGATGTCTGAACAGTTGACAGAAAAATCTGATGTTTACTCATTTGGTGTAGTTCTACTTGAAGTGTTGTGTGCAAGACCAGCTATTGATCCAACGCTTCCAAGAGAGCAAATGAAATTGACTGAATGGGGAATGCTTTGCCAGAAAAGAGGGCTGCTTGAAGAGATTGTTGATTCTCCACTAAAGGGTCAGATTGATCCTAACTCACTGCGTAAGTTTGGTGAGACGGTTGAGAAGTGTTTGCAAGAAGATGCTTGTGATAGGCCAACAATGGCTGATGTGCTGTGGGAGTATGGATTACAGCTTCAGCAAACAACAAAGCTTAAAGAGGTTCATGAGAACAGCACAACCATTGATGCTTCATCAGCAGCATTCGCTTTACCAAATGTTCAGCGTTTTCCTTCACTTGGTTCGACGAGGAATGGAGATGATATTAGGGAAGCCGACTTGGACACAACAGAAAGTGAAATTTTCTCTCAATTGAAAATTGGTGATGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

4.55

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 112 7.7e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 11 - 111 8e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 35, 134, 242
AcsI RAATTY 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 236, 458
AgsI TTSAA 3 cut(s) 113, 212, 535
AluBI AGCT 3 cut(s) 134, 355, 373
AluI AGCT 3 cut(s) 134, 355, 373
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 3 cut(s) 35, 134, 242
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 205, 419
ApoI RAATTY 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 284, 554
BbvI GCAGC 2 cut(s) 192, 431
BcoDI GTCTC 1 cut(s) 269
BisI GCNGC 2 cut(s) 206, 420
BlsI GCNGC 2 cut(s) 207, 421
BmsI GCATC 3 cut(s) 292, 397, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 458
BseLI CCNNNNNNNGG 2 cut(s) 236, 458
BseXI GCAGC 2 cut(s) 192, 431
BshFI GGCC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 236, 458
BsmAI GTCTC 1 cut(s) 269
BsmBI CGTCTC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 189, 422
BsnI GGCC 1 cut(s) 316
Bsp143I GATC 3 cut(s) 40, 139, 247
BspANI GGCC 1 cut(s) 316
BspHI TCATGA 1 cut(s) 385
BspPI GGATC 3 cut(s) 35, 134, 242
BssMI GATC 3 cut(s) 40, 139, 247
Bst4CI ACNGT 2 cut(s) 66, 280
Bst6I CTCTTC 1 cut(s) 207
BstKTI GATC 3 cut(s) 43, 142, 250
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 3 cut(s) 40, 139, 247
BstMWI GCNNNNNNNGC 3 cut(s) 131, 416, 425
BstV1I GCAGC 2 cut(s) 192, 431
BsuRI GGCC 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
CciI TCATGA 1 cut(s) 385
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 52, 386
CviJI RGCY 7 cut(s) 134, 205, 316, 326, 355, 373, 494
CviKI_1 RGCY 7 cut(s) 134, 205, 316, 326, 355, 373, 494
CviQI GTAC 1 cut(s) 49
DpnI GATC 3 cut(s) 42, 141, 249
DpnII GATC 3 cut(s) 40, 139, 247
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 2 cut(s) 55, 389
FaiI YATR 3 cut(s) 53, 345, 387
FatI CATG 2 cut(s) 51, 385
Fnu4HI GCNGC 2 cut(s) 206, 420
Fsp4HI GCNGC 2 cut(s) 206, 420
GluI GCNGC 2 cut(s) 206, 420
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 2 cut(s) 55, 389
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 1 cut(s) 224
HphI GGTGA 2 cut(s) 284, 554
Hpy166II GTNNAC 2 cut(s) 69, 88
Hpy188I TCNGA 3 cut(s) 61, 82, 243
Hpy188III TCNNGA 3 cut(s) 38, 44, 386
Hpy8I GTNNAC 2 cut(s) 69, 88
Hpy99I CGWCG 1 cut(s) 469
HpyAV CCTTC 1 cut(s) 462
HpyCH4III ACNGT 2 cut(s) 66, 280
HpyCH4V TGCA 2 cut(s) 125, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 416, 425
Hsp92II CATG 2 cut(s) 55, 389
Kzo9I GATC 3 cut(s) 40, 139, 247
LpnPI CCDG 3 cut(s) 57, 144, 206
Lsp1109I GCAGC 2 cut(s) 192, 431
LweI GCATC 3 cut(s) 292, 397, 535
MalI GATC 3 cut(s) 42, 141, 249
MboI GATC 3 cut(s) 40, 139, 247
MboII GAAGA 2 cut(s) 224, 311
MfeI CAATTG 1 cut(s) 530
MluCI AATT 4 cut(s) 167, 519, 530, 537
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 3 cut(s) 194, 373, 462
MseI TTAA 2 cut(s) 17, 375
MunI CAATTG 1 cut(s) 530
Mva1269I GAATGC 2 cut(s) 189, 422
MwoI GCNNNNNNNGC 3 cut(s) 131, 416, 425
NdeII GATC 3 cut(s) 40, 139, 247
NlaIII CATG 2 cut(s) 55, 389
PagI TCATGA 1 cut(s) 385
PctI GAATGC 2 cut(s) 189, 422
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 207, 421
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 17, 375
SatI GCNGC 2 cut(s) 206, 420
Sau3AI GATC 3 cut(s) 40, 139, 247
SetI ASST 4 cut(s) 136, 357, 375, 384
SfaNI GCATC 3 cut(s) 292, 397, 535
Sse9I AATT 4 cut(s) 167, 519, 530, 537
TaaI ACNGT 2 cut(s) 66, 280
TaqI TCGA 1 cut(s) 464
TasI AATT 4 cut(s) 167, 519, 530, 537
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 17, 375
Tru9I TTAA 2 cut(s) 17, 375
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 205, 419
TspDTI ATGAA 3 cut(s) 179, 374, 402
TspRI CASTG 1 cut(s) 264
XapI RAATTY 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.