Rw2G014910

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000413
Physical Location & Seq
Reverse (-)
17060005 .. 17061518
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014910.1

Sequence Viewer

Length: 1458 bp
ATGCTAGTGTTTGATTTGTATTCGAATGGCAACTTCCGTAAGCAGATCTTTGGACTGGATTCCCCTTTTGTTCAAGCGTTGGCTACTCCTTTCTACTATGATTTTGTGGTGAATGCTACTGATTCTAAACTCATTAACATCAGAATAGCCCCTTCGAACAATACAACAATAGAAAATGCCTTTCTGAATGGGCTGGAAATATTGGAGATATTGGAGGGAACAGCTCTAATTTATAATTTGGAAGAGTCCAAGAAGGTAAGTGTGGCTCTTGTGGTTGGATCAGTTCTCGGAGGAGGCCTGTTTCTTTTCATCATTGGATTCATGTTGTGTTTGAGACACAAAAAGGCGAGAAAGAGGAACAGAGGAGGGATTTCCCACAACCTTGGGTTGAAGATATCTTTTGCTCAAATCCGGTCTGCAACAAACAACTTTGATCCGAAAATGCAGATAGGTGTGGGTGGTTTTGGGTATGTTTATAAAGGAACTCTCTCTAATGGCACCAAAGTGGCTGTGAAGCGTTGTAAGCAAGAGGGGCAAAGGTCAGGCCAAGGCCTTCCAGAATTCGAAACAGAAATCATAGTGTTGTCGAAAATCCGCCACCGCCATCTTGTCTCCTTAATTGGTTACTGTGATGAAGGGTCTGAGATGATACTAGTGTATGAGTTCATGGAAAAAGGGACCTTGAGAGATCATTTGTATGAATCGGATGTGCCTCGCTTGTCGTGGAAGCAAAGACTTGAAATTTGCATAGGTTCAGCAACTGGACTTGATTATCTCCATAAAGGTGCAGCAGGGGGCATCATCCACCGTGATGTGAAGTCCACCAACATATTGCTTGATGAGAACCTCGTTGCTAAAGTCGCTGACTTCGGGCTTTCGAGGTCTGGCCCTCTTGATGAAACTCATGTCAGCACGGTTGTGAAAGGCACTATCGGTTACCTTGATCCCGAGTACATGATGTCACAGCAGTTGACAGAGAAGTCTGATGTGTACTCATTTGGTGTAGTTCTTCTTGAGGTGTTATGTGGAAGACCTGCTATTGATATAACGCTTCCAAGAGAGAAAGTGAACTTAGCTGAATGGGTTGTGCTGTGCAAGAAAGAAGGGTTGCTAGAAGAGGTCATTGACGTTTCATTGAAGGGTCATATTGATCCTAGCTCACTGAGACATTTTATTGAGACTGCAGAGAAGTGTTTGCAACACGATTCTTCTGATAGGCCCACTATGGCTGAGGTGCTGTGGGATTTGGACTATACATTGAAGCTTCATCAAACTGCGAGGCTTGGAGAAGCCCATGAGGACAGCACTACCAGTGCTTCATCAGCTTTTTTACTACCAAATATTCGGCATTTTGCTTCACTTGATTCGACAGTTAACAGAGCTGATATGAGGGACGATGAGATGGAGTCCACAGAAAGCGAAATTTTCTCCCAACTGAGAATCGGCGAGGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

485

Amino Acids

54.01

Weight (kDa)

5.83

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 147 - 413 6.6e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 148 - 414 6e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 234, 477
AasI GACNNNNNNGTC 1 cut(s) 979
Acc36I ACCTGC 1 cut(s) 1042
AccB1I GGYRCC 1 cut(s) 497
AciI CCGC 2 cut(s) 595, 601
AclWI GGATC 4 cut(s) 286, 428, 938, 1145
AcsI RAATTY 3 cut(s) 560, 741, 1422
AfaI GTAC 2 cut(s) 953, 992
AgsI TTSAA 5 cut(s) 74, 391, 740, 1138, 1261
AhlI ACTAGT 1 cut(s) 652
AleI CACNNNNGTG 2 cut(s) 503, 917
AluBI AGCT 6 cut(s) 224, 1076, 1158, 1264, 1325, 1382
AluI AGCT 6 cut(s) 224, 1076, 1158, 1264, 1325, 1382
Alw26I GTCTC 4 cut(s) 328, 616, 1159, 1172
AlwI GGATC 4 cut(s) 286, 428, 938, 1145
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 947
AoxI GGCC 6 cut(s) 295, 544, 550, 886, 1217, 1449
ApeKI GCWGC 1 cut(s) 788
ApoI RAATTY 3 cut(s) 560, 741, 1422
ArsI GACNNNNNNTTYG 2 cut(s) 726, 758
AspS9I GGNCC 3 cut(s) 678, 887, 1218
AsuHPI GGTGA 1 cut(s) 121
AsuII TTCGAA 3 cut(s) 23, 155, 564
AvaI CYCGRG 1 cut(s) 947
AvaII GGWCC 1 cut(s) 678
BaeI ACNNNNGTAYC 2 cut(s) 641, 674
BanI GGYRCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 1036
BbvCI CCTCAGC 1 cut(s) 1230
BbvI GCAGC 1 cut(s) 800
BccI CCATC 2 cut(s) 612, 1396
BcoDI GTCTC 4 cut(s) 328, 616, 1159, 1172
BcuI ACTAGT 1 cut(s) 652
BfaI CTAG 4 cut(s) 5, 653, 1112, 1155
BfmI CTRYAG 1 cut(s) 1182
BfuAI ACCTGC 1 cut(s) 1042
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 789
BlsI GCNGC 1 cut(s) 790
Bme18I GGWCC 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 947
BmgT120I GGNCC 3 cut(s) 678, 887, 1218
BmiI GGNNCC 2 cut(s) 499, 679
BmsI GCATC 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 1036
Bpu10I CCTNAGC 1 cut(s) 1230
Bpu14I TTCGAA 3 cut(s) 23, 155, 564
BpuEI CTTGAG 2 cut(s) 703, 1034
BsaJI CCNNGG 2 cut(s) 382, 547
BsaWI WCCGGW 1 cut(s) 411
Bse1I ACTGG 3 cut(s) 60, 766, 1311
BseDI CCNNGG 2 cut(s) 382, 547
BseGI GGATG 2 cut(s) 712, 801
BseMII CTCAG 4 cut(s) 633, 1154, 1221, 1427
BseNI ACTGG 3 cut(s) 60, 766, 1311
BseRI GAGGAG 2 cut(s) 306, 378
BseXI GCAGC 1 cut(s) 800
BsgI GTGCAG 1 cut(s) 807
BshFI GGCC 6 cut(s) 297, 546, 552, 888, 1219, 1451
BshNI GGYRCC 1 cut(s) 497
BsiHKCI CYCGRG 1 cut(s) 947
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 2 cut(s) 691, 1406
BsmAI GTCTC 4 cut(s) 328, 616, 1159, 1172
BsmFI GGGAC 2 cut(s) 691, 1406
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 6 cut(s) 297, 546, 552, 888, 1219, 1451
BsoBI CYCGRG 1 cut(s) 947
Bsp119I TTCGAA 3 cut(s) 23, 155, 564
Bsp143I GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
BspACI CCGC 2 cut(s) 595, 601
BspANI GGCC 6 cut(s) 297, 546, 552, 888, 1219, 1451
BspCNI CTCAG 4 cut(s) 634, 1155, 1222, 1428
BspLI GGNNCC 2 cut(s) 499, 679
BspMAI CTGCAG 1 cut(s) 1186
BspMI ACCTGC 1 cut(s) 1042
BspPI GGATC 4 cut(s) 286, 428, 938, 1145
BspT104I TTCGAA 3 cut(s) 23, 155, 564
BspT107I GGYRCC 1 cut(s) 497
BsrI ACTGG 3 cut(s) 60, 766, 1311
BssECI CCNNGG 2 cut(s) 382, 547
BssMI GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
BssT1I CCWWGG 2 cut(s) 382, 547
Bst4CI ACNGT 4 cut(s) 629, 809, 916, 1372
Bst6I CTCTTC 2 cut(s) 237, 1110
BstBI TTCGAA 3 cut(s) 23, 155, 564
BstDEI CTNAG 5 cut(s) 642, 1072, 1163, 1230, 1436
BstEII GGTNACC 1 cut(s) 935
BstF5I GGATG 2 cut(s) 712, 801
BstKTI GATC 6 cut(s) 48, 281, 436, 691, 946, 1153
BstMAI GTCTC 4 cut(s) 328, 616, 1159, 1172
BstMBI GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 523, 532, 860, 1322
BstPI GGTNACC 1 cut(s) 935
BstSFI CTRYAG 1 cut(s) 1182
BstV1I GCAGC 1 cut(s) 800
BstV2I GAAGAC 1 cut(s) 1036
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 6 cut(s) 297, 546, 552, 888, 1219, 1451
BtsCI GGATG 2 cut(s) 712, 801
BtsIMutI CAGTG 2 cut(s) 1160, 1318
BveI ACCTGC 1 cut(s) 1042
CaiI CAGNNNCTG 1 cut(s) 761
Cfr13I GGNCC 3 cut(s) 678, 887, 1218
Csp6I GTAC 2 cut(s) 952, 991
CviAII CATG 5 cut(s) 322, 667, 905, 955, 1295
CviQI GTAC 2 cut(s) 952, 991
DdeI CTNAG 5 cut(s) 642, 1072, 1163, 1230, 1436
DpnI GATC 6 cut(s) 47, 280, 435, 690, 945, 1152
DpnII GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
DrdI GACNNNNNNGTC 1 cut(s) 979
DseDI GACNNNNNNGTC 1 cut(s) 979
Eam1104I CTCTTC 2 cut(s) 237, 1110
EarI CTCTTC 2 cut(s) 237, 1110
EciI GGCGGA 1 cut(s) 584
Eco130I CCWWGG 2 cut(s) 382, 547
Eco147I AGGCCT 2 cut(s) 297, 552
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 947
Eco91I GGTNACC 1 cut(s) 935
EcoO109I RGGNCCY 1 cut(s) 678
EcoO65I GGTNACC 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 560
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 382, 547
ErhI CCWWGG 2 cut(s) 382, 547
FaeI CATG 5 cut(s) 325, 670, 908, 958, 1298
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 2 cut(s) 691, 1406
FatI CATG 5 cut(s) 321, 666, 904, 954, 1294
Fnu4HI GCNGC 1 cut(s) 789
FokI GGATG 2 cut(s) 719, 788
Fsp4HI GCNGC 1 cut(s) 789
FspBI CTAG 4 cut(s) 5, 653, 1112, 1155
GluI GCNGC 1 cut(s) 789
HaeIII GGCC 6 cut(s) 297, 546, 552, 888, 1219, 1451
HapII CCGG 1 cut(s) 412
Hin1II CATG 5 cut(s) 325, 670, 908, 958, 1298
HincII GTYRAC 2 cut(s) 972, 1375
HindII GTYRAC 2 cut(s) 972, 1375
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 9 cut(s) 59, 122, 245, 318, 701, 1205, 1364, 1406, 1440
HpaI GTTAAC 1 cut(s) 1375
HpaII CCGG 1 cut(s) 412
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 6 cut(s) 822, 972, 991, 1069, 1375, 1410
Hpy188I TCNGA 8 cut(s) 143, 186, 290, 438, 643, 706, 985, 1213
Hpy188III TCNNGA 4 cut(s) 557, 893, 947, 1013
Hpy8I GTNNAC 6 cut(s) 822, 972, 991, 1069, 1375, 1410
HpyAV CCTTC 6 cut(s) 162, 247, 563, 629, 1097, 1132
HpyCH4III ACNGT 4 cut(s) 629, 809, 916, 1372
HpyCH4IV ACGT 1 cut(s) 1128
HpyCH4V TGCA 7 cut(s) 419, 445, 747, 788, 1095, 1184, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 523, 532, 860, 1322
HpyF3I CTNAG 5 cut(s) 642, 1072, 1163, 1230, 1436
HpySE526I ACGT 1 cut(s) 1128
Hsp92II CATG 5 cut(s) 325, 670, 908, 958, 1298
KspAI GTTAAC 1 cut(s) 1375
Kzo9I GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
Lsp1109I GCAGC 1 cut(s) 800
LweI GCATC 1 cut(s) 807
MaeI CTAG 4 cut(s) 5, 653, 1112, 1155
MaeII ACGT 1 cut(s) 1128
MaeIII GTNAC 3 cut(s) 623, 935, 960
MalI GATC 6 cut(s) 47, 280, 435, 690, 945, 1152
MboI GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
MboII GAAGA 6 cut(s) 254, 403, 1001, 1041, 1127, 1200
MflI RGATCY 1 cut(s) 45
MluCI AATT 6 cut(s) 228, 235, 560, 618, 741, 1422
MlyI GAGTC 2 cut(s) 254, 1415
MmeI TCCRAC 1 cut(s) 256
MseI TTAA 3 cut(s) 135, 617, 1374
MslI CAYNNNNRTG 5 cut(s) 503, 696, 783, 810, 917
MspI CCGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 523, 532, 860, 1322
NdeII GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
NlaIII CATG 5 cut(s) 325, 670, 908, 958, 1298
NlaIV GGNNCC 2 cut(s) 499, 679
NmuCI GTSAC 1 cut(s) 960
NspV TTCGAA 3 cut(s) 23, 155, 564
OliI CACNNNNGTG 2 cut(s) 503, 917
PceI AGGCCT 2 cut(s) 297, 552
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 7 cut(s) 59, 122, 318, 701, 1205, 1364, 1440
PkrI GCNGC 1 cut(s) 790
PleI GAGTC 2 cut(s) 253, 1414
PpsI GAGTC 2 cut(s) 253, 1414
PpuMI RGGWCCY 1 cut(s) 678
PsiI TTATAA 2 cut(s) 234, 477
Psp5II RGGWCCY 1 cut(s) 678
PspEI GGTNACC 1 cut(s) 935
PspN4I GGNNCC 2 cut(s) 499, 679
PspPI GGNCC 3 cut(s) 678, 887, 1218
PspPPI RGGWCCY 1 cut(s) 678
PstI CTGCAG 1 cut(s) 1186
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 953, 992
RsaNI GTAC 2 cut(s) 952, 991
RseI CAYNNNNRTG 5 cut(s) 503, 696, 783, 810, 917
SaqAI TTAA 3 cut(s) 135, 617, 1374
SatI GCNGC 1 cut(s) 789
Sau3AI GATC 6 cut(s) 45, 278, 433, 688, 943, 1150
Sau96I GGNCC 3 cut(s) 678, 887, 1218
SchI GAGTC 2 cut(s) 254, 1415
SfaNI GCATC 1 cut(s) 807
SfcI CTRYAG 1 cut(s) 1182
SfuI TTCGAA 3 cut(s) 23, 155, 564
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 5 cut(s) 503, 696, 783, 810, 917
SmlI CTYRAG 2 cut(s) 682, 1013
SmoI CTYRAG 2 cut(s) 682, 1013
SpeI ACTAGT 1 cut(s) 652
Sse9I AATT 6 cut(s) 228, 235, 560, 618, 741, 1422
SseBI AGGCCT 2 cut(s) 297, 552
SsiI CCGC 2 cut(s) 595, 601
SspI AATATT 2 cut(s) 201, 1342
SspMI CTAG 4 cut(s) 5, 653, 1112, 1155
StuI AGGCCT 2 cut(s) 297, 552
StyI CCWWGG 2 cut(s) 382, 547
TaaI ACNGT 4 cut(s) 629, 809, 916, 1372
TaiI ACGT 1 cut(s) 1131
TaqI TCGA 6 cut(s) 23, 155, 564, 587, 878, 1367
TasI AATT 6 cut(s) 228, 235, 560, 618, 741, 1422
TatI WGTACW 2 cut(s) 951, 990
TfiI GAWTC 7 cut(s) 59, 122, 318, 701, 1205, 1364, 1440
Tru1I TTAA 3 cut(s) 135, 617, 1374
Tru9I TTAA 3 cut(s) 135, 617, 1374
TscAI CASTG 2 cut(s) 1167, 1318
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 9 cut(s) 298, 310, 648, 655, 714, 912, 1122, 1256, 1308
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 1167, 1318
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 3 cut(s) 560, 741, 1422
XspI CTAG 4 cut(s) 5, 653, 1112, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.