Prupe.6G228200_v2.0.a1

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000413
Physical Location & Seq
Forward (+)
23215813 .. 23218591
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G228200.3

Sequence Viewer

Length: 1449 bp
ATGGAAACTTCATTAAGAAGCGTAGGCCCTAGCATACACACAACAACAACAAACAATTCCTTTCTAAATGGACTGGAAATGTTGGGGATAATAGAGGGACCAGCTTTAAGTAACCCTCCAGCTTCTGTTTGTAATATGAAAGGGCGCAAGAAGATAAAGGTGGGTCTTGTGGTTGGTTCAGTTATTGGAGGCCTGTCACTTATCTGCATTCTGATTGTCGGAATCTTGTTCGGTTTGAAATACAGAAAGGCAAAGCGTGTTGAAACTTCGGAATGGTCACCAATGCCTGCATTTGGAGGAGGGAGTACCCACAGCAGGTTGACTGATGGAACTATTACTGGTTCCCCTATGAATTATCTAAATCTTGGGTTGAAGATATCTTTTGCTGAACTTCAGCAAGCAACAAACAACTTTGACACAAAATTGTTGATAGGTGAGGGTGGCTTTGGGAATGTCTACAGAGGAACTCTGTTGAATGGCAGAAATGTCGCTGTCAAGCGAGGTAAACGAGATGAGAAAGGGTCAGGCCAAGGCCTTCCAGAATTTCAAACAGAGATCATGGTTTTGTGCAAGATTCGCCACCGTCATCTTGTTTCCTTAATTGGGTACTGTGATGAAAGGTCTGAGATGATACTGGTCTACGAGTTCATGGAAAAAGGGAGCTTGAGAGATCATTTATATGATTCAAACTTGCCTCGCTTGTCATGGAAGCAAAGGCTTGAAATTTGCATTGGTGCAGCAAGGGGTCTTCATTACCTCCACACAGGTGCAGCGGGGGGAATCATTCACCGTGATGTTAAGTCCACCAACATCTTGTTGGATGAAAACCATGTTGCCAAAGTTTCTGACTTTGGCCTTTCAAGATCTGGTCCTCTTGATGAAACACATGTCAGCACAAATGTTAAAGGCACTTTTGGTTACCTTGATCCTGAGTACATAATGTCCCAACAGTTGACAGAAAAATCTGATGTTTACTCGTTCGGTGTGGTTCTCCTTGAGGTGTTATGTGCAAGACCTGCTATTGATAGAATGCTCCCAAGAGACCAAATGACTTTAGCTGAATGGGGAATGCTTTGCAAGAAGAAAGGGTTGCTTGAACAGATTGTTGACTCTTCAATCAATTATCAGATTGATCCTAGCTCATTAAGAAAATTTAGTGAGACAGCAGAGAAATGCTTGCAAGAAGATGCTAATGATAGGCCTACAATGGGTGATGTGCTGTGGGACTTGGAGTATGCATTCCAGCTCCAGCAAACAGCAAAGCATAGAGAACCCCATGAAGACAGCACAGCCAATGCTTCATCAGCATCTGTTTTGCCAAATATTCAGCGTTTTCCTTCAGTTAGCTCTACGATTAACATAGATGATCTGGCTCTTCCCGGAGACGATGAATTAGATACAACAGAAGTTGAAGTTTTCTCCCAATTGAGAGTTGGTGATGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

483

Amino Acids

53.14

Weight (kDa)

6.1

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 306, 1024
AccI GTMKAC 2 cut(s) 456, 639
AciI CCGC 1 cut(s) 773
AclWI GGATC 2 cut(s) 920, 1127
AcsI RAATTY 3 cut(s) 542, 723, 1151
AcuI CTGAAG 2 cut(s) 377, 1323
AfaI GTAC 3 cut(s) 307, 608, 935
AfiI CCNNNNNNNGG 4 cut(s) 293, 315, 603, 1208
AflIII ACRYGT 1 cut(s) 886
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AleI CACNNNNGTG 1 cut(s) 765
AluBI AGCT 7 cut(s) 104, 122, 663, 1058, 1140, 1246, 1347
AluI AGCT 7 cut(s) 104, 122, 663, 1058, 1140, 1246, 1347
Alw26I GTCTC 3 cut(s) 1035, 1154, 1377
AlwI GGATC 2 cut(s) 920, 1127
AlwNI CAGNNNCTG 2 cut(s) 125, 1310
AoxI GGCC 6 cut(s) 25, 190, 526, 532, 853, 1199
ApeKI GCWGC 2 cut(s) 737, 770
ApoI RAATTY 3 cut(s) 542, 723, 1151
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 3 cut(s) 26, 98, 869
AsuC2I CCSGG 1 cut(s) 1380
AsuHPI GGTGA 5 cut(s) 270, 446, 779, 1223, 1448
AvaII GGWCC 2 cut(s) 98, 869
BbsI GAAGAC 2 cut(s) 740, 1287
BbvI GCAGC 2 cut(s) 749, 782
BccI CCATC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BcnI CCSGG 1 cut(s) 1380
BcoDI GTCTC 3 cut(s) 1035, 1154, 1377
BfaI CTAG 2 cut(s) 30, 1137
BfmI CTRYAG 1 cut(s) 457
BfuAI ACCTGC 2 cut(s) 306, 1024
BglII AGATCT 1 cut(s) 863
BisI GCNGC 2 cut(s) 738, 771
BlsI GCNGC 2 cut(s) 739, 772
Bme1390I CCNGG 1 cut(s) 1380
Bme18I GGWCC 2 cut(s) 98, 869
BmgT120I GGNCC 3 cut(s) 26, 98, 869
BmiI GGNNCC 2 cut(s) 99, 343
BmrFI CCNGG 1 cut(s) 1380
BmsI GCATC 3 cut(s) 1177, 1316, 1429
BpiI GAAGAC 2 cut(s) 740, 1287
BpmI CTGGAG 2 cut(s) 102, 1232
BpuEI CTTGAG 2 cut(s) 685, 1016
BpuMI CCSGG 1 cut(s) 1380
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 1 cut(s) 529
Bsc4I CCNNNNNNNGG 4 cut(s) 293, 315, 603, 1208
Bse1I ACTGG 3 cut(s) 78, 343, 639
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 1 cut(s) 826
BseLI CCNNNNNNNGG 4 cut(s) 293, 315, 603, 1208
BseMII CTCAG 2 cut(s) 615, 921
BseNI ACTGG 3 cut(s) 78, 343, 639
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 749, 782
BsgI GTGCAG 2 cut(s) 756, 789
BshFI GGCC 6 cut(s) 27, 192, 528, 534, 855, 1201
BsiSI CCGG 1 cut(s) 1380
BslFI GGGAC 3 cut(s) 111, 928, 1238
BslI CCNNNNNNNGG 4 cut(s) 293, 315, 603, 1208
BsmAI GTCTC 3 cut(s) 1035, 1154, 1377
BsmBI CGTCTC 1 cut(s) 1377
BsmFI GGGAC 3 cut(s) 111, 928, 1238
BsmI GAATGC 4 cut(s) 207, 1035, 1074, 1238
BsnI GGCC 6 cut(s) 27, 192, 528, 534, 855, 1201
Bso31I GGTCTC 1 cut(s) 1035
Bsp143I GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
BspACI CCGC 1 cut(s) 773
BspANI GGCC 6 cut(s) 27, 192, 528, 534, 855, 1201
BspCNI CTCAG 2 cut(s) 616, 922
BspLI GGNNCC 2 cut(s) 99, 343
BspMI ACCTGC 2 cut(s) 306, 1024
BspPI GGATC 2 cut(s) 920, 1127
BspQI GCTCTTC 1 cut(s) 1380
BspTNI GGTCTC 1 cut(s) 1035
BsrI ACTGG 3 cut(s) 78, 343, 639
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
BssT1I CCWWGG 1 cut(s) 529
Bst4CI ACNGT 4 cut(s) 584, 611, 791, 951
Bst6I CTCTTC 2 cut(s) 1117, 1380
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstC8I GCNNGC 3 cut(s) 288, 399, 1178
BstDEI CTNAG 2 cut(s) 624, 930
BstEII GGTNACC 2 cut(s) 276, 917
BstF5I GGATG 1 cut(s) 826
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 6 cut(s) 558, 673, 866, 928, 1135, 1369
BstMAI GTCTC 3 cut(s) 1035, 1154, 1377
BstMBI GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
BstMWI GCNNNNNNNGC 3 cut(s) 576, 1016, 1304
BstNSI RCATGY 1 cut(s) 890
BstPI GGTNACC 2 cut(s) 276, 917
BstSCI CCNGG 1 cut(s) 1378
BstSFI CTRYAG 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 749, 782
BstV2I GAAGAC 2 cut(s) 740, 1287
BstX2I RGATCY 1 cut(s) 863
BstYI RGATCY 1 cut(s) 863
BsuRI GGCC 6 cut(s) 27, 192, 528, 534, 855, 1201
BtsCI GGATG 1 cut(s) 826
BveI ACCTGC 2 cut(s) 306, 1024
Cac8I GCNNGC 3 cut(s) 288, 399, 1178
CaiI CAGNNNCTG 2 cut(s) 125, 1310
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 3 cut(s) 26, 98, 869
Csp6I GTAC 3 cut(s) 306, 607, 934
CviAII CATG 6 cut(s) 559, 649, 705, 830, 887, 1277
CviQI GTAC 3 cut(s) 306, 607, 934
DdeI CTNAG 2 cut(s) 624, 930
DpnI GATC 6 cut(s) 557, 672, 865, 927, 1134, 1368
DpnII GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
Eam1104I CTCTTC 2 cut(s) 1117, 1380
EarI CTCTTC 2 cut(s) 1117, 1380
Eco130I CCWWGG 1 cut(s) 529
Eco147I AGGCCT 3 cut(s) 192, 534, 1201
Eco31I GGTCTC 1 cut(s) 1035
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 98, 869
Eco57I CTGAAG 2 cut(s) 377, 1323
Eco91I GGTNACC 2 cut(s) 276, 917
EcoO109I RGGNCCY 1 cut(s) 26
EcoO65I GGTNACC 2 cut(s) 276, 917
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 1240
ErhI CCWWGG 1 cut(s) 529
Esp3I CGTCTC 1 cut(s) 1377
FaeI CATG 6 cut(s) 562, 652, 708, 833, 890, 1280
FalI AAGNNNNNCTT 2 cut(s) 1077, 1109
FaqI GGGAC 3 cut(s) 111, 928, 1238
FatI CATG 6 cut(s) 558, 648, 704, 829, 886, 1276
FauI CCCGC 1 cut(s) 766
FblI GTMKAC 2 cut(s) 456, 639
Fnu4HI GCNGC 2 cut(s) 738, 771
FokI GGATG 1 cut(s) 833
Fsp4HI GCNGC 2 cut(s) 738, 771
FspBI CTAG 2 cut(s) 30, 1137
GlaI GCGC 1 cut(s) 146
GluI GCNGC 2 cut(s) 738, 771
GsuI CTGGAG 2 cut(s) 102, 1232
HaeIII GGCC 6 cut(s) 27, 192, 528, 534, 855, 1201
HapII CCGG 1 cut(s) 1380
HhaI GCGC 1 cut(s) 147
Hin1II CATG 6 cut(s) 562, 652, 708, 833, 890, 1280
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 3 cut(s) 321, 954, 1108
HindII GTYRAC 3 cut(s) 321, 954, 1108
HinfI GANTC 5 cut(s) 222, 574, 683, 780, 1109
HpaII CCGG 1 cut(s) 1380
HphI GGTGA 5 cut(s) 270, 446, 779, 1223, 1448
Hpy166II GTNNAC 8 cut(s) 321, 457, 506, 640, 804, 954, 973, 1108
Hpy188I TCNGA 7 cut(s) 213, 221, 271, 625, 847, 967, 1128
Hpy188III TCNNGA 4 cut(s) 539, 861, 875, 929
Hpy8I GTNNAC 8 cut(s) 321, 457, 506, 640, 804, 954, 973, 1108
HpyAV CCTTC 2 cut(s) 545, 1347
HpyCH4III ACNGT 4 cut(s) 584, 611, 791, 951
HpyF10VI GCNNNNNNNGC 3 cut(s) 576, 1016, 1304
HpyF3I CTNAG 2 cut(s) 624, 930
Hsp92II CATG 6 cut(s) 562, 652, 708, 833, 890, 1280
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
LguI GCTCTTC 1 cut(s) 1380
LmnI GCTCC 3 cut(s) 660, 1038, 1251
Lsp1109I GCAGC 2 cut(s) 749, 782
LweI GCATC 3 cut(s) 1177, 1316, 1429
MaeI CTAG 2 cut(s) 30, 1137
MaeIII GTNAC 4 cut(s) 110, 195, 276, 917
MalI GATC 6 cut(s) 557, 672, 865, 927, 1134, 1368
MboI GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
MboII GAAGA 8 cut(s) 163, 385, 740, 1093, 1104, 1196, 1292, 1367
MfeI CAATTG 1 cut(s) 1424
MflI RGATCY 1 cut(s) 863
MlyI GAGTC 1 cut(s) 1103
MmeI TCCRAC 2 cut(s) 199, 798
Mph1103I ATGCAT 1 cut(s) 1240
MseI TTAA 7 cut(s) 14, 107, 599, 798, 903, 1145, 1356
MslI CAYNNNNRTG 3 cut(s) 678, 765, 792
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 1 cut(s) 1380
MspR9I CCNGG 1 cut(s) 1380
MunI CAATTG 1 cut(s) 1424
Mva1269I GAATGC 4 cut(s) 207, 1035, 1074, 1238
MwoI GCNNNNNNNGC 3 cut(s) 576, 1016, 1304
NciI CCSGG 1 cut(s) 1380
NdeII GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
NlaIII CATG 6 cut(s) 562, 652, 708, 833, 890, 1280
NlaIV GGNNCC 2 cut(s) 99, 343
NmuCI GTSAC 2 cut(s) 195, 276
NsiI ATGCAT 1 cut(s) 1240
NspI RCATGY 1 cut(s) 890
OliI CACNNNNGTG 1 cut(s) 765
PceI AGGCCT 3 cut(s) 192, 534, 1201
PciI ACATGT 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 1380
PctI GAATGC 4 cut(s) 207, 1035, 1074, 1238
PfeI GAWTC 4 cut(s) 222, 574, 683, 780
PfoI TCCNGGA 1 cut(s) 1378
PkrI GCNGC 2 cut(s) 739, 772
PleI GAGTC 1 cut(s) 1103
PpsI GAGTC 1 cut(s) 1103
PscI ACATGT 1 cut(s) 886
PspEI GGTNACC 2 cut(s) 276, 917
PspN4I GGNNCC 2 cut(s) 99, 343
PspPI GGNCC 3 cut(s) 26, 98, 869
PstNI CAGNNNCTG 2 cut(s) 125, 1310
PsuI RGATCY 1 cut(s) 863
RsaI GTAC 3 cut(s) 307, 608, 935
RsaNI GTAC 3 cut(s) 306, 607, 934
RseI CAYNNNNRTG 3 cut(s) 678, 765, 792
SapI GCTCTTC 1 cut(s) 1380
SaqAI TTAA 7 cut(s) 14, 107, 599, 798, 903, 1145, 1356
SatI GCNGC 2 cut(s) 738, 771
Sau3AI GATC 6 cut(s) 555, 670, 863, 925, 1132, 1366
Sau96I GGNCC 3 cut(s) 26, 98, 869
SchI GAGTC 1 cut(s) 1103
ScrFI CCNGG 1 cut(s) 1380
SfaNI GCATC 3 cut(s) 1177, 1316, 1429
SfcI CTRYAG 1 cut(s) 457
SinI GGWCC 2 cut(s) 98, 869
SmiMI CAYNNNNRTG 3 cut(s) 678, 765, 792
SmlI CTYRAG 2 cut(s) 664, 995
SmoI CTYRAG 2 cut(s) 664, 995
SseBI AGGCCT 3 cut(s) 192, 534, 1201
SsiI CCGC 1 cut(s) 773
SspI AATATT 1 cut(s) 1324
SspMI CTAG 2 cut(s) 30, 1137
StuI AGGCCT 3 cut(s) 192, 534, 1201
StyD4I CCNGG 1 cut(s) 1378
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 4 cut(s) 584, 611, 791, 951
TatI WGTACW 1 cut(s) 933
TfiI GAWTC 4 cut(s) 222, 574, 683, 780
Tru1I TTAA 7 cut(s) 14, 107, 599, 798, 903, 1145, 1356
Tru9I TTAA 7 cut(s) 14, 107, 599, 798, 903, 1145, 1356
TseFI GTSAC 2 cut(s) 195, 276
TseI GCWGC 2 cut(s) 737, 770
Tsp45I GTSAC 2 cut(s) 195, 276
VpaK11BI GGWCC 2 cut(s) 98, 869
XapI RAATTY 3 cut(s) 542, 723, 1151
XceI RCATGY 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 2 cut(s) 814, 1430
XmiI GTMKAC 2 cut(s) 456, 639
XspI CTAG 2 cut(s) 30, 1137
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.