Rmu_sc0004082.1_g000017

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004082.1
OG0000413
Physical Location & Seq
Reverse (-)
70486 .. 71283
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004082.1_g000017.1.cds

Sequence Viewer

Length: 798 bp
atggaaaaagggacgttgagagataatttgtatgattcagacgtgcctcgcttgtcatggaatcaaagacttgaaatttgtactggagcagcaaggggtcttcattatctccacacaagtgcagctaggggaatcattcaccgagatgtcaagtccaccaacatattgcttgatgaaaaccatgttgccaaagttgctgactttggcctttcgagatctggagctctcgatgaaacgcatgtcagcactaatgttaaaggcacttttggttaccttgatcctgagtacatgatgtctgaacaattgacagaaaaatctgatgtttactcatttggtgtagttcttcttgaggtgttaagtggaagacctgctattgatccaacgcttccaagagagcaaatgaacttgggtgaatggggaatgctttgcaagaaaaaagggttgcttgagcagattgttgattcttctttgaaaaatcagattgatcctagctcactaagaacttttggtgagacggctgagaagtgtttgcaagatgatgcttctgataggccaacaatggccaatgtgctgtgggatttggaatatgcattacagcttcagaaaacaacaaagcttaaagaggctcatgaggacagcaccaccattgatgcttcatcagcatcattcagtttgccaattgttcagcgttttccttcacttggttcgacaacaaatggagatgatatgagggacagcgacttggacacaacagaaaacaaaattttctcccaattgaaaattggtgatgccagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

265

Amino Acids

29.46

Weight (kDa)

4.97

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AclWI GGATC 3 cut(s) 272, 371, 479
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 2 cut(s) 75, 762
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 2 cut(s) 82, 287
AfiI CCNNNNNNNGG 1 cut(s) 701
AgsI TTSAA 3 cut(s) 74, 472, 778
AjiI CACGTC 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 5 cut(s) 125, 224, 492, 598, 616
AluI AGCT 5 cut(s) 125, 224, 492, 598, 616
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 3 cut(s) 272, 371, 479
AoxI GGCC 3 cut(s) 205, 551, 561
ApeKI GCWGC 2 cut(s) 89, 122
ApoI RAATTY 2 cut(s) 75, 762
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AsuHPI GGTGA 4 cut(s) 131, 422, 521, 797
BalI TGGCCA 1 cut(s) 563
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 92, 370
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 101, 134
BceAI ACGGC 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 2 cut(s) 126, 489
BfuAI ACCTGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 215
BisI GCNGC 2 cut(s) 90, 123
BlsI GCNGC 2 cut(s) 91, 124
BmgBI CACGTC 1 cut(s) 43
BmsI GCATC 4 cut(s) 529, 640, 671, 778
BpiI GAAGAC 2 cut(s) 92, 370
BpmI CTGGAG 2 cut(s) 105, 240
BpuEI CTTGAG 2 cut(s) 368, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse1I ACTGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMII CTCAG 2 cut(s) 273, 510
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 101, 134
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 3 cut(s) 207, 553, 563
BsiHKAI GWGCWC 1 cut(s) 226
BslFI GGGAC 2 cut(s) 25, 746
BslI CCNNNNNNNGG 1 cut(s) 701
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 25, 746
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 3 cut(s) 207, 553, 563
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 215, 277, 376, 484
BspANI GGCC 3 cut(s) 207, 553, 563
BspCNI CTCAG 2 cut(s) 274, 511
BspHI TCATGA 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 272, 371, 479
BsrI ACTGG 1 cut(s) 88
BssMI GATC 4 cut(s) 215, 277, 376, 484
BstDEI CTNAG 3 cut(s) 282, 497, 519
BstEII GGTNACC 1 cut(s) 269
BstKTI GATC 4 cut(s) 218, 280, 379, 487
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 4 cut(s) 215, 277, 376, 484
BstMWI GCNNNNNNNGC 2 cut(s) 194, 659
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 101, 134
BstV2I GAAGAC 2 cut(s) 92, 370
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 3 cut(s) 207, 553, 563
BtrI CACGTC 1 cut(s) 43
BveI ACCTGC 1 cut(s) 376
CciI TCATGA 1 cut(s) 628
Csp6I GTAC 2 cut(s) 81, 286
CviAII CATG 5 cut(s) 57, 182, 239, 289, 629
CviQI GTAC 2 cut(s) 81, 286
DdeI CTNAG 3 cut(s) 282, 497, 519
DpnI GATC 4 cut(s) 217, 279, 378, 486
DpnII GATC 4 cut(s) 215, 277, 376, 484
EaeI YGGCCR 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 269
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 5 cut(s) 60, 185, 242, 292, 632
FaiI YATR 9 cut(s) 33, 58, 164, 183, 240, 290, 588, 630, 728
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 25, 746
FatI CATG 5 cut(s) 56, 181, 238, 288, 628
Fnu4HI GCNGC 2 cut(s) 90, 123
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 90, 123
FspBI CTAG 2 cut(s) 126, 489
GluI GCNGC 2 cut(s) 90, 123
GsuI CTGGAG 2 cut(s) 105, 240
HaeIII GGCC 3 cut(s) 207, 553, 563
Hin1II CATG 5 cut(s) 60, 185, 242, 292, 632
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 4 cut(s) 35, 61, 132, 461
HphI GGTGA 4 cut(s) 131, 422, 521, 797
Hpy166II GTNNAC 2 cut(s) 156, 325
Hpy188I TCNGA 6 cut(s) 40, 298, 319, 480, 547, 603
Hpy188III TCNNGA 6 cut(s) 213, 219, 227, 281, 347, 629
Hpy8I GTNNAC 2 cut(s) 156, 325
HpyAV CCTTC 1 cut(s) 705
HpyCH4IV ACGT 2 cut(s) 14, 42
HpyCH4V TGCA 4 cut(s) 122, 429, 532, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 659
HpyF3I CTNAG 3 cut(s) 282, 497, 519
HpySE526I ACGT 2 cut(s) 14, 42
Hsp92II CATG 5 cut(s) 60, 185, 242, 292, 632
Kzo9I GATC 4 cut(s) 215, 277, 376, 484
LmnI GCTCC 2 cut(s) 86, 221
LpnPI CCDG 4 cut(s) 69, 204, 294, 381
Lsp1109I GCAGC 2 cut(s) 101, 134
LweI GCATC 4 cut(s) 529, 640, 671, 778
MaeI CTAG 2 cut(s) 126, 489
MaeII ACGT 2 cut(s) 14, 42
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 217, 279, 378, 486
MboI GATC 4 cut(s) 215, 277, 376, 484
MboII GAAGA 4 cut(s) 92, 335, 375, 456
MfeI CAATTG 3 cut(s) 302, 678, 773
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 7 cut(s) 25, 75, 302, 678, 762, 773, 780
MluNI TGGCCA 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 5 cut(s) 57, 343, 616, 625, 723
Mox20I TGGCCA 1 cut(s) 563
Mph1103I ATGCAT 1 cut(s) 592
MscI TGGCCA 1 cut(s) 563
MseI TTAA 3 cut(s) 255, 356, 618
MslI CAYNNNNRTG 2 cut(s) 117, 144
Msp20I TGGCCA 1 cut(s) 563
MunI CAATTG 3 cut(s) 302, 678, 773
Mva1269I GAATGC 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 194, 659
NdeII GATC 4 cut(s) 215, 277, 376, 484
NlaIII CATG 5 cut(s) 60, 185, 242, 292, 632
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 117
PagI TCATGA 1 cut(s) 628
PctI GAATGC 1 cut(s) 426
PfeI GAWTC 4 cut(s) 35, 61, 132, 461
PkrI GCNGC 2 cut(s) 91, 124
Psp124BI GAGCTC 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 82, 287
RsaNI GTAC 2 cut(s) 81, 286
RseI CAYNNNNRTG 2 cut(s) 117, 144
SacI GAGCTC 1 cut(s) 226
SaqAI TTAA 3 cut(s) 255, 356, 618
SatI GCNGC 2 cut(s) 90, 123
Sau3AI GATC 4 cut(s) 215, 277, 376, 484
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 4 cut(s) 529, 640, 671, 778
SmiMI CAYNNNNRTG 2 cut(s) 117, 144
SmlI CTYRAG 2 cut(s) 347, 446
SmoI CTYRAG 2 cut(s) 347, 446
Sse9I AATT 7 cut(s) 25, 75, 302, 678, 762, 773, 780
SspMI CTAG 2 cut(s) 126, 489
SstI GAGCTC 1 cut(s) 226
TaiI ACGT 2 cut(s) 17, 45
TaqI TCGA 3 cut(s) 212, 228, 707
TasI AATT 7 cut(s) 25, 75, 302, 678, 762, 773, 780
TatI WGTACW 2 cut(s) 80, 285
TfiI GAWTC 4 cut(s) 35, 61, 132, 461
Tru1I TTAA 3 cut(s) 255, 356, 618
Tru9I TTAA 3 cut(s) 255, 356, 618
TseI GCWGC 2 cut(s) 89, 122
TspDTI ATGAA 5 cut(s) 92, 189, 246, 416, 645
XapI RAATTY 2 cut(s) 75, 762
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 779
XspI CTAG 2 cut(s) 126, 489
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.