Rh2AG189800

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
18688954 .. 18709288
20335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG189800.1

Sequence Viewer

Length: 1308 bp
ATGCCTGCAAATGGAGGAGGGAGTTCTCACAACTCCCCTCTCAATCTTAATTATCTTGGGTTGAAGATATCTTTTAATGAAATTCAGTCTACAACAAACAACTTTGACACAAAGTTGGTGATAGCTTATGAACTCCAAGAAAAGTATTTCGTCAATTGTGGATCAGATGCTACTGTGGACCTCAATGGTCGGAATTTCATTGGGGATTTGAAGCCTGATTCCTTCTCTTTCTCAAAGGAAAGTGAGACTATCAAAGGCACCAACCTTACGATATCAAGTCTCTACCAGACAGCAAGAGTTTTCAGTCAACAATCCTACTACAAGTTCAAAATCACTGAAACCGGTACTTATCTGGTACGCCTGCACTTCTTTCCCTTTTCTTTGGCCTCAAGTAATCTTTCTACTGGCATTTTTGATGTTTCGGATTCCAAGTTCACTCTGTTGAACAATTTCACTGCCAAGATTAATAGTACTAGCAACTCTGCTGTAATAAAGGAATTCTTTCTTGGAATTAATAGTACCAACTCATTTAAACTATATTTTACACCTCAAGCATCATCTTTTGCTTTTGTAAACGCCATTGAAGTCTTCCTTGCACCTTCAAATTTCACCCCTGAAAATCACAATAATAATCTTCCTTTACACACAACTTACCGAGTAAATGTTGGAGGCCCAGTGCTCTCACCAGATAATGACACAATATGGAGAAACTGGGAAACAGATGATATTTATCTTTCTGATCCAAACTCTGCGAAGGATGTCCATAACCAAAATACCCCACTTACTTGTGATAATAAGGATCAAGCTGATGAGTTTGTTGCATCTAATAATTTTATTGCCCCGGATTTGGTTTACAAGACAGCTAAAGAGATGAATAGTACTAGTAGCAGGCCAGCCAATTCCTCCAACATAACATGGTCATTTAGTGTGAGCAGGAATGCTACGTACATTATCCTTGTACACTTCTGTGACATTGTTTCTAGTTCCCCTCATACTATAGTCTTTGACTTGTATTCGAATGGCAACTTCCGTAAGCAGATCGTTGGATTGGATTCCCCTTTTGCTAAAGCGTTGGCTACTCCTTTCTACTATGATTTTGTGGTGAATGCTACTGAGCCTAAACTCATTAACATCAGTATAGCCCCTAACTTGGCGAATACAACAATAGAAAATGCCTTTCTGAATGGACTGGAAATATTGGCGATATTGGAGGGAACAGCTCTAATTTATAATTTGGAAGAGTCCAAGAAGAAACGGCATAGCAGTCTCCTCTTCAACATCCACTTGTGCAGCATTGTTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

48.41

Weight (kDa)

5.51

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 49 - 151 1.5e-07 Malectin domain
Malectin_like PF12819 51 - 400 3.7e-28 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1230
AccB1I GGYRCC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 89
AclWI GGATC 3 cut(s) 169, 734, 807
AcsI RAATTY 4 cut(s) 81, 193, 497, 604
AfaI GTAC 7 cut(s) 346, 357, 472, 520, 880, 947, 960
AfiI CCNNNNNNNGG 3 cut(s) 11, 847, 1150
AgeI ACCGGT 1 cut(s) 341
AgsI TTSAA 8 cut(s) 64, 211, 328, 445, 584, 603, 1276, 1301
AhlI ACTAGT 1 cut(s) 881
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AleI CACNNNNGTG 1 cut(s) 966
AloI GAACNNNNNNTCC 2 cut(s) 416, 448
AluBI AGCT 4 cut(s) 125, 806, 863, 1220
AluI AGCT 4 cut(s) 125, 806, 863, 1220
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 3 cut(s) 239, 284, 1271
AlwI GGATC 3 cut(s) 169, 734, 807
AoxI GGCC 3 cut(s) 384, 670, 890
ApeKI GCWGC 1 cut(s) 1290
ApoI RAATTY 4 cut(s) 81, 193, 497, 604
AseI ATTAAT 2 cut(s) 465, 513
AsiGI ACCGGT 1 cut(s) 341
Asp700I GAANNNNTTC 2 cut(s) 449, 501
AspS9I GGNCC 2 cut(s) 178, 671
AsuC2I CCSGG 1 cut(s) 842
AsuHPI GGTGA 4 cut(s) 130, 601, 675, 1114
AsuII TTCGAA 1 cut(s) 1016
AvaII GGWCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 1302
BceAI ACGGC 1 cut(s) 1271
BcnI CCSGG 1 cut(s) 842
BcoDI GTCTC 3 cut(s) 239, 284, 1271
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 3 cut(s) 474, 882, 981
BfmI CTRYAG 1 cut(s) 996
BisI GCNGC 1 cut(s) 1291
BlsI GCNGC 1 cut(s) 1292
BmcAI AGTACT 2 cut(s) 472, 880
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 178, 671
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 842
BmrI ACTGGG 2 cut(s) 668, 721
BmsI GCATC 3 cut(s) 157, 563, 830
BmuI ACTGGG 2 cut(s) 668, 721
BpiI GAAGAC 1 cut(s) 580
Bpu14I TTCGAA 1 cut(s) 1016
BpuEI CTTGAG 2 cut(s) 373, 534
BpuMI CCSGG 1 cut(s) 842
BsaAI YACGTR 1 cut(s) 945
BsaBI GATNNNNATC 1 cut(s) 729
BsaJI CCNNGG 1 cut(s) 840
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 847, 1150
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 4 cut(s) 409, 674, 716, 1194
Bse8I GATNNNNATC 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 840
BseGI GGATG 2 cut(s) 763, 1278
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 3 cut(s) 11, 847, 1150
BseMII CTCAG 1 cut(s) 1104
BseNI ACTGG 4 cut(s) 409, 674, 716, 1194
BseRI GAGGAG 2 cut(s) 30, 1259
BseXI GCAGC 1 cut(s) 1302
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 3 cut(s) 386, 672, 892
BshNI GGYRCC 1 cut(s) 257
BshTI ACCGGT 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 681
BsiSI CCGG 2 cut(s) 342, 842
BslI CCNNNNNNNGG 3 cut(s) 11, 847, 1150
BsmAI GTCTC 3 cut(s) 239, 284, 1271
BsmI GAATGC 2 cut(s) 943, 1111
BsnI GGCC 3 cut(s) 386, 672, 892
Bsp119I TTCGAA 1 cut(s) 1016
Bsp1286I GDGCHC 1 cut(s) 681
Bsp1407I TGTACA 1 cut(s) 958
Bsp143I GATC 4 cut(s) 161, 739, 799, 1038
BspANI GGCC 3 cut(s) 386, 672, 892
BspCNI CTCAG 1 cut(s) 1105
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 3 cut(s) 169, 734, 807
BspT104I TTCGAA 1 cut(s) 1016
BspT107I GGYRCC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 958
BsrI ACTGG 4 cut(s) 409, 674, 716, 1194
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 840
BssMI GATC 4 cut(s) 161, 739, 799, 1038
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 1233, 1277
BstAUI TGTACA 1 cut(s) 958
BstBAI YACGTR 1 cut(s) 945
BstBI TTCGAA 1 cut(s) 1016
BstC8I GCNNGC 4 cut(s) 6, 362, 890, 894
BstDEI CTNAG 1 cut(s) 1113
BstF5I GGATG 2 cut(s) 763, 1278
BstKTI GATC 4 cut(s) 164, 742, 802, 1041
BstMAI GTCTC 3 cut(s) 239, 284, 1271
BstMBI GATC 4 cut(s) 161, 739, 799, 1038
BstSCI CCNGG 1 cut(s) 840
BstSFI CTRYAG 1 cut(s) 996
BstSNI TACGTA 1 cut(s) 945
BstV1I GCAGC 1 cut(s) 1302
BstV2I GAAGAC 1 cut(s) 580
BsuRI GGCC 3 cut(s) 386, 672, 892
BtsCI GGATG 2 cut(s) 763, 1278
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 333, 453, 681
Cac8I GCNNGC 4 cut(s) 6, 362, 890, 894
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 178, 671
Csp6I GTAC 7 cut(s) 345, 356, 471, 519, 879, 946, 959
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 1 cut(s) 915
CviQI GTAC 7 cut(s) 345, 356, 471, 519, 879, 946, 959
DdeI CTNAG 1 cut(s) 1113
DpnI GATC 4 cut(s) 163, 741, 801, 1040
DpnII GATC 4 cut(s) 161, 739, 799, 1038
DraI TTTAAA 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 1233, 1277
EarI CTCTTC 2 cut(s) 1233, 1277
Eco105I TACGTA 1 cut(s) 945
Eco32I GATATC 2 cut(s) 69, 273
Eco47I GGWCC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 497
EcoRV GATATC 2 cut(s) 69, 273
FaeI CATG 1 cut(s) 918
FalI AAGNNNNNCTT 4 cut(s) 485, 517, 576, 608
FatI CATG 1 cut(s) 914
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 1291
FokI GGATG 2 cut(s) 770, 1265
Fsp4HI GCNGC 1 cut(s) 1291
FspBI CTAG 3 cut(s) 474, 882, 981
GluI GCNGC 1 cut(s) 1291
HaeIII GGCC 3 cut(s) 386, 672, 892
HapII CCGG 2 cut(s) 342, 842
Hin1II CATG 1 cut(s) 918
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HinfI GANTC 4 cut(s) 218, 425, 1052, 1241
HpaII CCGG 2 cut(s) 342, 842
HphI GGTGA 4 cut(s) 130, 601, 675, 1114
Hpy166II GTNNAC 7 cut(s) 90, 178, 308, 435, 574, 853, 961
Hpy188I TCNGA 5 cut(s) 166, 192, 424, 739, 1182
Hpy188III TCNNGA 1 cut(s) 1301
Hpy8I GTNNAC 7 cut(s) 90, 178, 308, 435, 574, 853, 961
HpyAV CCTTC 3 cut(s) 232, 609, 748
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 944
HpyCH4V TGCA 5 cut(s) 8, 364, 596, 821, 1290
HpyF3I CTNAG 1 cut(s) 1113
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 1 cut(s) 918
Kzo9I GATC 4 cut(s) 161, 739, 799, 1038
Lsp1109I GCAGC 1 cut(s) 1302
LweI GCATC 3 cut(s) 157, 563, 830
MaeI CTAG 3 cut(s) 474, 882, 981
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 1 cut(s) 968
MalI GATC 4 cut(s) 163, 741, 801, 1040
MboI GATC 4 cut(s) 161, 739, 799, 1038
MboII GAAGA 6 cut(s) 76, 580, 626, 1250, 1261, 1264
MfeI CAATTG 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 681
MlyI GAGTC 1 cut(s) 1250
MmeI TCCRAC 4 cut(s) 170, 646, 930, 1024
MroXI GAANNNNTTC 2 cut(s) 449, 501
MseI TTAA 7 cut(s) 48, 75, 465, 513, 531, 1128, 1306
MslI CAYNNNNRTG 1 cut(s) 966
MspI CCGG 2 cut(s) 342, 842
MspR9I CCNGG 1 cut(s) 842
MunI CAATTG 1 cut(s) 154
Mva1269I GAATGC 2 cut(s) 943, 1111
NciI CCSGG 1 cut(s) 842
NdeII GATC 4 cut(s) 161, 739, 799, 1038
NlaIII CATG 1 cut(s) 918
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 968
NspV TTCGAA 1 cut(s) 1016
OliI CACNNNNGTG 1 cut(s) 966
PctI GAATGC 2 cut(s) 943, 1111
PdmI GAANNNNTTC 2 cut(s) 449, 501
PfeI GAWTC 3 cut(s) 218, 425, 1052
PinAI ACCGGT 1 cut(s) 341
PkrI GCNGC 1 cut(s) 1292
PleI GAGTC 1 cut(s) 1249
PpsI GAGTC 1 cut(s) 1249
Ppu21I YACGTR 1 cut(s) 945
PshBI ATTAAT 2 cut(s) 465, 513
PsiI TTATAA 1 cut(s) 1230
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 178, 671
RsaI GTAC 7 cut(s) 346, 357, 472, 520, 880, 947, 960
RsaNI GTAC 7 cut(s) 345, 356, 471, 519, 879, 946, 959
RseI CAYNNNNRTG 1 cut(s) 966
SaqAI TTAA 7 cut(s) 48, 75, 465, 513, 531, 1128, 1306
SatI GCNGC 1 cut(s) 1291
Sau3AI GATC 4 cut(s) 161, 739, 799, 1038
Sau96I GGNCC 2 cut(s) 178, 671
ScaI AGTACT 2 cut(s) 472, 880
SchI GAGTC 1 cut(s) 1250
ScrFI CCNGG 1 cut(s) 842
SduI GDGCHC 1 cut(s) 681
SetI ASST 9 cut(s) 127, 183, 267, 550, 601, 808, 865, 947, 1222
SfaNI GCATC 3 cut(s) 157, 563, 830
SfcI CTRYAG 1 cut(s) 996
SfuI TTCGAA 1 cut(s) 1016
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 2 cut(s) 388, 549
SmoI CTYRAG 2 cut(s) 388, 549
SnaBI TACGTA 1 cut(s) 945
SpeI ACTAGT 1 cut(s) 881
SspI AATATT 1 cut(s) 1197
SspMI CTAG 3 cut(s) 474, 882, 981
StyD4I CCNGG 1 cut(s) 840
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 947
TaqI TCGA 1 cut(s) 1016
TatI WGTACW 3 cut(s) 470, 878, 958
TfiI GAWTC 3 cut(s) 218, 425, 1052
Tru1I TTAA 7 cut(s) 48, 75, 465, 513, 531, 1128, 1306
Tru9I TTAA 7 cut(s) 48, 75, 465, 513, 531, 1128, 1306
TscAI CASTG 3 cut(s) 340, 460, 681
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 1 cut(s) 1290
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 4 cut(s) 93, 144, 187, 887
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 3 cut(s) 340, 460, 681
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 2 cut(s) 465, 513
XapI RAATTY 4 cut(s) 81, 193, 497, 604
XmiI GTMKAC 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 449, 501
XspI CTAG 3 cut(s) 474, 882, 981
ZrmI AGTACT 2 cut(s) 472, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.