Rh1BG052300

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
7291515 .. 7311477
19963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG052300.1

Sequence Viewer

Length: 1377 bp
ATGGAGCATCTTCGTATCCCATTACTCTCTCTGCTTGTTTTTCTCCTCAACCTCTCATCCCTTCACTTTCTCTCTTTAGCTGATGATTATTTCATCAACTGTGGCTCACATGATAATGTGAGCCTCACTCCTGGCCAGAATTTCTCTGGGGAATCGAAGTCTGCAGGTTACTCTTTCTCCAAAAGCAAGGCTGTCAAAGACATCAACCAGTTGCGAGATATATCACCTCTATATAAGACAGCAAGAAGTTTCAATAAACCATTCTACTACCAGTTCAGCATCACTGAAGATGGTACTTATCTGGCGCCTGGTAACATTATATTTAACTTGTATGCAAATGGCAACTTCCGCAAGGAGATCGGCAACATTTCTCAATCTTCAATTTTTCAATATTCGGCTGTTCCCTTCTACTATGACTTTGTGGTGAATTACAGTGAGTCTGAACTCTTTAATATCAGCATAAGACCTAACAATGGTGCTTCTGAACAAAATGCATTTCTAAATGGTCTGGAAATATTGGAGATAGTGGAGGGATTAGCTCCAATTCCCAATGTTGTGGCTCCTGTGATTGTCGCGGATTTTGATTTTCGATGCCTCTTCTCTGGAACTCTCTTCTTCGATGAGGAACTTGACCATGTTGTGGAAGAACTGGAGAAAATTGCTATTGTCAATCTTCTTCAGCACCGATCAATAATATCTCTCATTGGAGATGTGCAGAAATCATCACTAATATTAGAGAAGAATCCAATTGTTTGTAGCACCATTGATAACCATCTTGAATATCGTGATTTTTCCTTCTGCTTCACCCTTAAAAATACTGTCGTGGTCTGTCTATTTTCATCTAGAAGATTTGGTGAAACAGCTCAGAGAAGCCGAAAATGTGAGATGAGAGGCCGGGAATCGAAGTCTGGTAACTCTTTCACGAAAAGCAAGGCTATCAAAGACATCAACCAGTTGCTAGATATATCACCTCTATATAAGACAGCAAAAGGTTTCAGTAAACCATTCTACTACCAGTTCAACATCAATGAAGATGGTACTTATCCGGTATGCCTACATTTCTCAGCTTTCTCCTCCTCAAATAATCTCTCCACAGTTTTTGGTGTTTTGAATCCTAAGAATTTCACATTGTTGAACAATTTCACCGCCAAGAGCAGTACCAACTCCCCTGTGATAAAGGAATTCTTTTTCCGAATTGATATTACCAACAAGTTTAGACTATATTTTACACCTCAACCATTTTTTGCATTTGTAAATGCCATTGAAATATTCCTTGGCCCTTCAGGTTTCATCGCTGAGAACTATACCAATAATTTCCCTTTACACACAATTTGCAGACTGAACGTTGTAGAATCACCAGTAAATGACATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

51.84

Weight (kDa)

6.11

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 640
AccII CGCG 1 cut(s) 575
AciI CCGC 3 cut(s) 349, 575, 1146
AclI AACGTT 1 cut(s) 1344
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 139, 1120, 1181
AcuI CTGAAG 3 cut(s) 306, 662, 1266
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 3 cut(s) 295, 1039, 1159
AfiI CCNNNNNNNGG 2 cut(s) 473, 640
AgsI TTSAA 8 cut(s) 253, 381, 389, 779, 1021, 1111, 1135, 1265
AjnI CCWGG 2 cut(s) 130, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 1257, 1289
AluBI AGCT 4 cut(s) 80, 539, 863, 1067
AluI AGCT 4 cut(s) 80, 539, 863, 1067
AoxI GGCC 3 cut(s) 133, 892, 1276
ApoI RAATTY 3 cut(s) 139, 1120, 1181
Asp700I GAANNNNTTC 1 cut(s) 1139
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 1277
AsuC2I CCSGG 1 cut(s) 896
AsuHPI GGTGA 7 cut(s) 216, 436, 796, 866, 960, 1135, 1347
BalI TGGCCA 1 cut(s) 135
BanI GGYRCC 1 cut(s) 304
BccI CCATC 3 cut(s) 284, 780, 1028
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 2 cut(s) 132, 309
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 896
BfaI CTAG 2 cut(s) 843, 959
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 155
BfuI GTATCC 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 132, 309, 896
BmgT120I GGNCC 1 cut(s) 1277
BmiI GGNNCC 2 cut(s) 306, 561
BmrFI CCNGG 3 cut(s) 132, 309, 896
BmsI GCATC 3 cut(s) 16, 288, 581
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 896
BsaBI GATNNNNATC 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 1273
BsaWI WCCGGW 1 cut(s) 1045
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 640
Bse1I ACTGG 6 cut(s) 208, 271, 654, 952, 1015, 1358
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 2 cut(s) 132, 309
BseDI CCNNGG 1 cut(s) 1273
BseGI GGATG 1 cut(s) 56
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 2 cut(s) 473, 640
BseMII CTCAG 3 cut(s) 878, 1077, 1287
BseNI ACTGG 6 cut(s) 208, 271, 654, 952, 1015, 1358
BseRI GAGGAG 3 cut(s) 35, 1063, 1066
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 3 cut(s) 135, 894, 1278
BshNI GGYRCC 1 cut(s) 304
BsiSI CCGG 2 cut(s) 895, 1046
BslI CCNNNNNNNGG 2 cut(s) 473, 640
BsnI GGCC 3 cut(s) 135, 894, 1278
Bsp143I GATC 2 cut(s) 357, 686
BspACI CCGC 3 cut(s) 349, 575, 1146
BspANI GGCC 3 cut(s) 135, 894, 1278
BspCNI CTCAG 3 cut(s) 877, 1076, 1288
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 306, 561
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 304
BsrI ACTGG 6 cut(s) 208, 271, 654, 952, 1015, 1358
BssECI CCNNGG 1 cut(s) 1273
BssMI GATC 2 cut(s) 357, 686
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 1273
Bst2UI CCWGG 2 cut(s) 132, 309
Bst4CI ACNGT 4 cut(s) 101, 434, 820, 1096
Bst6I CTCTTC 2 cut(s) 602, 617
BstACI GRCGYC 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 864, 1063, 1116, 1296
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 575
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 2 cut(s) 360, 689
BstMBI GATC 2 cut(s) 357, 686
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 2 cut(s) 132, 309
BstSCI CCNGG 3 cut(s) 130, 307, 894
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 575
BstXI CCANNNNNNTGG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 135, 894, 1278
BtgZI GCGATG 1 cut(s) 1276
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 282, 439
BveI ACCTGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 1277
Csp6I GTAC 3 cut(s) 294, 1038, 1158
CspCI CAANNNNNGTGG 2 cut(s) 1081, 1116
CviAII CATG 2 cut(s) 110, 635
CviQI GTAC 3 cut(s) 294, 1038, 1158
DdeI CTNAG 4 cut(s) 864, 1063, 1116, 1296
DinI GGCGCC 1 cut(s) 306
DpnI GATC 2 cut(s) 359, 688
DpnII GATC 2 cut(s) 357, 686
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 602, 617
EarI CTCTTC 2 cut(s) 602, 617
Eco130I CCWWGG 1 cut(s) 1273
Eco57I CTGAAG 3 cut(s) 306, 662, 1266
EcoRI GAATTC 1 cut(s) 1181
EcoRII CCWGG 2 cut(s) 130, 307
EcoT14I CCWWGG 1 cut(s) 1273
EcoT22I ATGCAT 1 cut(s) 496
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 1273
FaeI CATG 2 cut(s) 113, 638
FalI AAGNNNNNCTT 2 cut(s) 1169, 1201
FatI CATG 2 cut(s) 109, 634
FokI GGATG 1 cut(s) 43
FspBI CTAG 2 cut(s) 843, 959
GlaI GCGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 3 cut(s) 135, 894, 1278
HapII CCGG 2 cut(s) 895, 1046
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 2 cut(s) 113, 638
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 6 cut(s) 152, 437, 742, 899, 1111, 1352
HpaII CCGG 2 cut(s) 895, 1046
HphI GGTGA 7 cut(s) 216, 436, 796, 866, 960, 1135, 1347
Hpy166II GTNNAC 1 cut(s) 1001
Hpy188I TCNGA 4 cut(s) 442, 484, 867, 1193
Hpy188III TCNNGA 6 cut(s) 509, 603, 776, 785, 843, 922
Hpy8I GTNNAC 1 cut(s) 1001
HpyAV CCTTC 4 cut(s) 71, 415, 805, 1290
HpyCH4III ACNGT 4 cut(s) 101, 434, 820, 1096
HpyCH4IV ACGT 1 cut(s) 1344
HpyCH4V TGCA 6 cut(s) 164, 335, 494, 715, 1247, 1335
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 4 cut(s) 864, 1063, 1116, 1296
HpySE526I ACGT 1 cut(s) 1344
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 2 cut(s) 113, 638
HspAI GCGC 1 cut(s) 305
KasI GGCGCC 1 cut(s) 304
Kzo9I GATC 2 cut(s) 357, 686
LmnI GCTCC 3 cut(s) 4, 544, 565
LweI GCATC 3 cut(s) 16, 288, 581
MaeI CTAG 2 cut(s) 843, 959
MaeII ACGT 1 cut(s) 1344
MaeIII GTNAC 3 cut(s) 167, 311, 911
MalI GATC 2 cut(s) 359, 688
MboI GATC 2 cut(s) 357, 686
MfeI CAATTG 1 cut(s) 747
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 446
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 1139
MscI TGGCCA 1 cut(s) 135
MseI TTAA 3 cut(s) 324, 450, 810
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 135
MspI CCGG 2 cut(s) 895, 1046
MspR9I CCNGG 3 cut(s) 132, 309, 896
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 2 cut(s) 132, 309
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 348
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 1 cut(s) 896
NdeII GATC 2 cut(s) 357, 686
NlaIII CATG 2 cut(s) 113, 638
NlaIV GGNNCC 2 cut(s) 306, 561
NsiI ATGCAT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 5 cut(s) 152, 742, 899, 1111, 1352
PflMI CCANNNNNTGG 1 cut(s) 640
PleI GAGTC 1 cut(s) 445
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 445
Psp1406I AACGTT 1 cut(s) 1344
Psp6I CCWGG 2 cut(s) 130, 307
PspGI CCWGG 2 cut(s) 130, 307
PspN4I GGNNCC 2 cut(s) 306, 561
PspPI GGNCC 1 cut(s) 1277
PstI CTGCAG 1 cut(s) 166
RsaI GTAC 3 cut(s) 295, 1039, 1159
RsaNI GTAC 3 cut(s) 294, 1038, 1158
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 3 cut(s) 324, 450, 810
Sau3AI GATC 2 cut(s) 357, 686
Sau96I GGNCC 1 cut(s) 1277
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 3 cut(s) 132, 309, 896
SfaNI GCATC 3 cut(s) 16, 288, 581
SfcI CTRYAG 1 cut(s) 162
SfoI GGCGCC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 114
SsiI CCGC 3 cut(s) 349, 575, 1146
SspDI GGCGCC 1 cut(s) 304
SspI AATATT 4 cut(s) 392, 516, 732, 1269
SspMI CTAG 2 cut(s) 843, 959
StyD4I CCNGG 3 cut(s) 130, 307, 894
StyI CCWWGG 1 cut(s) 1273
TaaI ACNGT 4 cut(s) 101, 434, 820, 1096
TaiI ACGT 1 cut(s) 1347
TaqI TCGA 4 cut(s) 155, 589, 618, 902
TfiI GAWTC 5 cut(s) 152, 742, 899, 1111, 1352
Tru1I TTAA 3 cut(s) 324, 450, 810
Tru9I TTAA 3 cut(s) 324, 450, 810
TscAI CASTG 2 cut(s) 289, 439
TspDTI ATGAA 4 cut(s) 82, 828, 1044, 1279
TspRI CASTG 2 cut(s) 289, 439
Van91I CCANNNNNTGG 1 cut(s) 640
XapI RAATTY 3 cut(s) 139, 1120, 1181
XbaI TCTAGA 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 2 cut(s) 843, 959
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.