RchiOBHm_Chr1g0324341

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000413
Physical Location & Seq
Forward (+)
12028935 .. 12029693
759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55418

Sequence Viewer

Length: 759 bp
ATGACCATTTGTCTTGGGTTGAAGGCAGTCATAATCAGCTCCGCTCTCAATTTAGATTATCTTGAGTTGAAGATATCTTTCAATGAAATTCAGTCTGCAACGAACAACTTTGACACAAAGTTGGTGATAGGCAAGGGTGGCTTTGGGAATGTTTATAGAGGCACTCTTTTGAATGGCACAAAAGTGGCTGTGAAGCGAGCTTATAAGCGAGACGAGCATGGGTCAGGATCAGGCCAAGGCCTCCTAGAATTCGAAACAGAAATCATAGTTTTATCGAAAATCCTCCACCGCCATCTTGTCTCCTTAATTGGTTACTGTAATGAAAGGTCTGAAATGATACTAGTGTATGAGTTCATGGAAAAAGGGACGTTGAGAGATCATTTGTATGATTCAGACGTGCCTCGCTTGTCGTGGAATCAAAGACTTGAAATTTGTACTGAAGCAGCAAGGGGTCTTCATTATCTCCACACAGGTGCAGCTAGGGGAATCATTCACCAAGATGTCAAGTCCACCAACATATTGCTTGATGAAAACCATGTTGCCAAAGTTGCTGACTTTGGCCTTTCGAGATTTGGAGCTCTCGATGAATTGCATGTCAGAACTAATGTTAAAGGCACTTTTGGTTACCTTGATCCTGAGTACATGATGTCTGAACAATTGACAGAAAAATATGATGTTTACTCATTTGGTGTAGTTCTTCTTGAGGTGTTATGTGTAAAACCTGCTATTGATCCAACGCTTCGAAGAGAGCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

252

Amino Acids

28.34

Weight (kDa)

6.15

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 242 6.6e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 41 - 238 1.3e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 730
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 2 cut(s) 42, 289
AclWI GGATC 3 cut(s) 235, 626, 725
AcsI RAATTY 3 cut(s) 87, 248, 429
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 436, 641
AgsI TTSAA 5 cut(s) 22, 70, 82, 172, 428
AhdI GACNNNNNGTC 1 cut(s) 9
AhlI ACTAGT 1 cut(s) 340
AjiI CACGTC 1 cut(s) 397
AleI CACNNNNGTG 2 cut(s) 182, 471
AluBI AGCT 4 cut(s) 39, 200, 479, 578
AluI AGCT 4 cut(s) 39, 200, 479, 578
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 204, 304
AlwI GGATC 3 cut(s) 235, 626, 725
AoxI GGCC 3 cut(s) 232, 238, 559
ApeKI GCWGC 2 cut(s) 443, 476
ApoI RAATTY 3 cut(s) 87, 248, 429
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AsuHPI GGTGA 2 cut(s) 136, 485
AsuII TTCGAA 2 cut(s) 252, 742
BaeI ACNNNNGTAYC 2 cut(s) 329, 362
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 455, 488
BccI CCATC 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 204, 304
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 3 cut(s) 245, 341, 480
BfuAI ACCTGC 1 cut(s) 730
BisI GCNGC 2 cut(s) 444, 477
BlsI GCNGC 2 cut(s) 445, 478
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 446
Bpu14I TTCGAA 2 cut(s) 252, 742
BpuEI CTTGAG 2 cut(s) 83, 722
BsaJI CCNNGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 758
BseMII CTCAG 1 cut(s) 627
BseXI GCAGC 2 cut(s) 455, 488
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 3 cut(s) 234, 240, 561
BsiHKAI GWGCWC 1 cut(s) 580
BslFI GGGAC 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 204, 304
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 3 cut(s) 234, 240, 561
Bsp119I TTCGAA 2 cut(s) 252, 742
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 4 cut(s) 227, 376, 631, 730
BspACI CCGC 2 cut(s) 42, 289
BspANI GGCC 3 cut(s) 234, 240, 561
BspCNI CTCAG 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 3 cut(s) 235, 626, 725
BspT104I TTCGAA 2 cut(s) 252, 742
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 758
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 4 cut(s) 227, 376, 631, 730
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 739
BstBI TTCGAA 2 cut(s) 252, 742
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 636
BstEII GGTNACC 1 cut(s) 623
BstKTI GATC 4 cut(s) 230, 379, 634, 733
BstMAI GTCTC 2 cut(s) 204, 304
BstMBI GATC 4 cut(s) 227, 376, 631, 730
BstMWI GCNNNNNNNGC 3 cut(s) 138, 214, 548
BstNSI RCATGY 1 cut(s) 596
BstPI GGTNACC 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 455, 488
BstV2I GAAGAC 1 cut(s) 446
BsuRI GGCC 3 cut(s) 234, 240, 561
BtrI CACGTC 1 cut(s) 397
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 1 cut(s) 198
Csp6I GTAC 2 cut(s) 435, 640
CviAII CATG 5 cut(s) 218, 355, 536, 593, 643
CviJI RGCY 9 cut(s) 39, 141, 188, 200, 234, 240, 479, 561, 578
CviKI_1 RGCY 9 cut(s) 39, 141, 188, 200, 234, 240, 479, 561, 578
CviQI GTAC 2 cut(s) 435, 640
DdeI CTNAG 1 cut(s) 636
DpnI GATC 4 cut(s) 229, 378, 633, 732
DpnII GATC 4 cut(s) 227, 376, 631, 730
DriI GACNNNNNGTC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 739
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 739
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 580
Eco32I GATATC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 459
Eco91I GGTNACC 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 248
EcoRV GATATC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 5 cut(s) 221, 358, 539, 596, 646
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 217, 354, 535, 592, 642
Fnu4HI GCNGC 2 cut(s) 444, 477
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 2 cut(s) 444, 477
FspBI CTAG 3 cut(s) 245, 341, 480
GluI GCNGC 2 cut(s) 444, 477
HaeIII GGCC 3 cut(s) 234, 240, 561
Hin1II CATG 5 cut(s) 221, 358, 539, 596, 646
HinfI GANTC 3 cut(s) 389, 415, 486
HphI GGTGA 2 cut(s) 136, 485
Hpy166II GTNNAC 2 cut(s) 510, 679
Hpy188I TCNGA 4 cut(s) 331, 394, 599, 652
Hpy188III TCNNGA 6 cut(s) 62, 225, 567, 581, 635, 701
Hpy8I GTNNAC 2 cut(s) 510, 679
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 2 cut(s) 368, 396
HpyCH4V TGCA 3 cut(s) 98, 476, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 214, 548
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 2 cut(s) 368, 396
Hsp92II CATG 5 cut(s) 221, 358, 539, 596, 646
Kzo9I GATC 4 cut(s) 227, 376, 631, 730
LmnI GCTCC 2 cut(s) 44, 575
LpnPI CCDG 5 cut(s) 210, 216, 456, 648, 735
Lsp1109I GCAGC 2 cut(s) 455, 488
MaeI CTAG 3 cut(s) 245, 341, 480
MaeII ACGT 2 cut(s) 368, 396
MaeIII GTNAC 2 cut(s) 311, 623
MalI GATC 4 cut(s) 229, 378, 633, 732
MbiI CCGCTC 1 cut(s) 44
MboI GATC 4 cut(s) 227, 376, 631, 730
MboII GAAGA 4 cut(s) 82, 446, 689, 756
MfeI CAATTG 1 cut(s) 656
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 7 cut(s) 49, 87, 248, 306, 429, 587, 656
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 5 cut(s) 152, 251, 293, 411, 697
MseI TTAA 3 cut(s) 305, 609, 757
MslI CAYNNNNRTG 4 cut(s) 182, 384, 471, 498
MunI CAATTG 1 cut(s) 656
MwoI GCNNNNNNNGC 3 cut(s) 138, 214, 548
NdeII GATC 4 cut(s) 227, 376, 631, 730
NlaIII CATG 5 cut(s) 221, 358, 539, 596, 646
NspI RCATGY 1 cut(s) 596
NspV TTCGAA 2 cut(s) 252, 742
OliI CACNNNNGTG 2 cut(s) 182, 471
PceI AGGCCT 1 cut(s) 240
PfeI GAWTC 3 cut(s) 389, 415, 486
PkrI GCNGC 2 cut(s) 445, 478
PsiI TTATAA 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 580
PspEI GGTNACC 1 cut(s) 623
RsaI GTAC 2 cut(s) 436, 641
RsaNI GTAC 2 cut(s) 435, 640
RseI CAYNNNNRTG 4 cut(s) 182, 384, 471, 498
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 3 cut(s) 305, 609, 757
SatI GCNGC 2 cut(s) 444, 477
Sau3AI GATC 4 cut(s) 227, 376, 631, 730
SduI GDGCHC 1 cut(s) 580
SfuI TTCGAA 2 cut(s) 252, 742
SmiMI CAYNNNNRTG 4 cut(s) 182, 384, 471, 498
SmlI CTYRAG 2 cut(s) 62, 701
SmoI CTYRAG 2 cut(s) 62, 701
SpeI ACTAGT 1 cut(s) 340
Sse9I AATT 7 cut(s) 49, 87, 248, 306, 429, 587, 656
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 2 cut(s) 42, 289
SspMI CTAG 3 cut(s) 245, 341, 480
SstI GAGCTC 1 cut(s) 580
StuI AGGCCT 1 cut(s) 240
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 2 cut(s) 371, 399
TaqI TCGA 5 cut(s) 252, 275, 566, 582, 742
TasI AATT 7 cut(s) 49, 87, 248, 306, 429, 587, 656
TatI WGTACW 2 cut(s) 434, 639
TfiI GAWTC 3 cut(s) 389, 415, 486
Tru1I TTAA 3 cut(s) 305, 609, 757
Tru9I TTAA 3 cut(s) 305, 609, 757
TseI GCWGC 2 cut(s) 443, 476
TspDTI ATGAA 6 cut(s) 99, 336, 343, 446, 543, 600
XapI RAATTY 3 cut(s) 87, 248, 429
XceI RCATGY 1 cut(s) 596
XspI CTAG 3 cut(s) 245, 341, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.