Rroxscaffold_4G00325680

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
57503248 .. 57509481
6234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325680.1

Sequence Viewer

Length: 606 bp
ATGTCGTCTGTCTTATCTGCCACTGATGTTTATTTCATCAACTGTGGTTCACATGATAATGTGAGCCTCACTCCTGGCCAGAATTTCTCTGGGGAATCGAAGCCTGAAGGATACTCTTTCTCCAAAAGCAAGGATGTTAAAGACATCAACCAGTTGCCAGATATATCACCTCTATATAAGACAGCAAGAAGTTTCAATAAACCATTCTACTACCAGTTTAGCATCACTGAAGATGGTACTTATCTGGTATGCTTACATTTCTCAGCTTTCTCCTCCTCCTCCTCCTCTTCCTCAAATAATCTCTCCATGGCTGTTTTTGGTGTTTTGGATTCTAAGAATTTCACACTATTGAACAATTTCACTGCCAAGAACACTACCAACTCCCCTGTGATAAAGGAATTCTTTCTCCGAATTGATATCACCAACTCATTTAGACTATATTTTACTCCTCAACCATCATCTTTTGCATTTGTAAATGCCATAGAATTATTCCTTTCCCCTGTAGATTTCATCCCTGAGAACTATACCAGTAATCTCCCTTTACATACAATTTACAGACTCAACGTTGGAGGCTCACCAGTAAATGACACAATAGGGAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

201

Amino Acids

22.35

Weight (kDa)

5.87

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 10 - 96 2.2e-08 Malectin domain
Malectin_like PF12819 13 - 192 1.7e-07 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 564
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 3 cut(s) 82, 337, 398
AcuI CTGAAG 2 cut(s) 126, 249
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 2 cut(s) 196, 352
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AoxI GGCC 1 cut(s) 76
ApoI RAATTY 3 cut(s) 82, 337, 398
Asp700I GAANNNNTTC 2 cut(s) 356, 402
AsuHPI GGTGA 3 cut(s) 159, 412, 567
BalI TGGCCA 1 cut(s) 78
BccI CCATC 2 cut(s) 227, 463
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 1 cut(s) 104
BfaI CTAG 1 cut(s) 604
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 55, 87
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 4 cut(s) 151, 214, 528, 578
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 139, 510
BseMII CTCAG 2 cut(s) 276, 507
BseNI ACTGG 4 cut(s) 151, 214, 528, 578
BseRI GAGGAG 6 cut(s) 262, 265, 268, 271, 274, 438
BshFI GGCC 1 cut(s) 78
BsnI GGCC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 275, 508
BsrI ACTGG 4 cut(s) 151, 214, 528, 578
BssECI CCNNGG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 262, 333, 516
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 139, 510
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 501
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 139, 510
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 3 cut(s) 21, 225, 360
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 53, 307
CviJI RGCY 6 cut(s) 66, 78, 103, 266, 311, 573
CviKI_1 RGCY 6 cut(s) 66, 78, 103, 266, 311, 573
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 3 cut(s) 262, 333, 516
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 306
Eco32I GATATC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 126, 249
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 56, 310
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 2 cut(s) 52, 306
FokI GGATG 2 cut(s) 146, 497
FspBI CTAG 1 cut(s) 604
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 2 cut(s) 56, 310
HinfI GANTC 3 cut(s) 95, 329, 558
HphI GGTGA 3 cut(s) 159, 412, 567
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 410
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 1 cut(s) 467
HpyF3I CTNAG 3 cut(s) 262, 333, 516
HpySE526I ACGT 1 cut(s) 564
Hsp92II CATG 2 cut(s) 56, 310
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 604
MaeII ACGT 1 cut(s) 564
MboII GAAGA 2 cut(s) 242, 279
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 7 cut(s) 82, 337, 355, 398, 411, 485, 549
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 547
Mox20I TGGCCA 1 cut(s) 78
MroXI GAANNNNTTC 2 cut(s) 356, 402
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 2 cut(s) 56, 310
PdmI GAANNNNTTC 2 cut(s) 356, 402
PfeI GAWTC 2 cut(s) 95, 329
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Psp1406I AACGTT 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 138
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 75
SetI ASST 3 cut(s) 172, 268, 567
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 7 cut(s) 82, 337, 355, 398, 411, 485, 549
SspMI CTAG 1 cut(s) 604
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 567
TaqI TCGA 1 cut(s) 98
TasI AATT 7 cut(s) 82, 337, 355, 398, 411, 485, 549
TfiI GAWTC 2 cut(s) 95, 329
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 3 cut(s) 28, 232, 367
TspDTI ATGAA 2 cut(s) 25, 499
TspRI CASTG 3 cut(s) 28, 232, 367
XapI RAATTY 3 cut(s) 82, 337, 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmnI GAANNNNTTC 2 cut(s) 356, 402
XspI CTAG 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.