Rh2DG195900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000413
Physical Location & Seq
Reverse (-)
17971369 .. 17972789
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG195900.1

Sequence Viewer

Length: 930 bp
ATGAATATCACTGCTAGCGGGCCAGCCAATTCCTCCAACATAGGACCTAGGAATGATTCTTGGGAACAAAATGCATTTCTAAATGGTCTGGAAATATTGGAGATAGTGGAGGGATTAGCTCAAATTCCTAATGTGAGAGAGTCCAAGAAGAATATTGTGGCTCCTGTGGTTGGTTCAGTTCTTGGAGGCATGTCACTCATCTGCGTTTTAATAGTTGGATTTCTGTTCAGTTTCAGACACAGAAAGGCGAAAAAACGTGTGGAAACTTCAGTTTGGTCACCAATGCCTGCAAATGGAGGAAGGAGTTCTCACGGCTCCCCTCTCAATCTTAATTATCTTGGGTTGAAGATAACTTTTAATGAAATTCAGTCTGCAACAAACAACTTTGACACAAAGTTGGTGATAGGTAAGGGTGGCTTTGGGAATGTTTATAAAGGGACTCTCTTGAACGGTACAAAAGTGGCTGTGAAGCGATCTTATAAGCGAGATGAGCGTGGATCAGCTATTGATCCAACACTTCCAAGAGAGCAAATAAACTTAGCTGAATGGGGAATGCTTTGCCAGAAAAGAAGGGTGCTTGAAGAGATTGTTGATTCTCCACTAAAGGGTGAGATTGATCCTAACTCACTGCGTAAGTTTGGTGAGACGGTTGAGAAGTGTTTGCAAGAAGATGCTTGTAATAGGCCAACAATGGAGGATGTGCTGTGGGATTTGGAGCATGCATTACAGCTTCAGCAAACAACAAAGCTTAAAGAGGCTCATGGGGACAGCACAAACATTGATGCTTCATCAGCAACATTCTCCTTGCCAAATGTTCAGCGTTTTCCTTCACTTGGTTCGACGAGGAATGGAGATGATATCAGGGAAGCCGACTTGGAATCAACAGAAAGTGAAATTTTCTCTCAATTGAAAATTGGTGATGCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

309

Amino Acids

33.94

Weight (kDa)

6.16

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 432, 480
AciI CCGC 1 cut(s) 18
AclWI GGATC 3 cut(s) 503, 505, 611
AcsI RAATTY 3 cut(s) 123, 363, 894
AcuI CTGAAG 2 cut(s) 252, 716
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 4 cut(s) 170, 293, 605, 833
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 4 cut(s) 346, 448, 581, 910
AluBI AGCT 5 cut(s) 119, 503, 542, 730, 748
AluI AGCT 5 cut(s) 119, 503, 542, 730, 748
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 3 cut(s) 503, 505, 611
AoxI GGCC 2 cut(s) 20, 683
ApoI RAATTY 3 cut(s) 123, 363, 894
Asp700I GAANNNNTTC 1 cut(s) 304
AspA2I CCTAGG 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 20, 44
AsuHPI GGTGA 5 cut(s) 270, 412, 620, 653, 929
AsuNHI GCTAGC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 47
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BceAI ACGGC 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 2 cut(s) 15, 48
BlnI CCTAGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 20, 44
BmiI GGNNCC 2 cut(s) 162, 316
BmsI GCATC 3 cut(s) 661, 772, 910
BmtI GCTAGC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 293, 605, 833
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 703
BseLI CCNNNNNNNGG 4 cut(s) 170, 293, 605, 833
BshFI GGCC 2 cut(s) 22, 685
BslFI GGGAC 2 cut(s) 451, 779
BslI CCNNNNNNNGG 4 cut(s) 170, 293, 605, 833
BsmAI GTCTC 1 cut(s) 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 2 cut(s) 451, 779
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 2 cut(s) 22, 685
Bsp143I GATC 4 cut(s) 473, 497, 508, 616
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 22, 685
BspLI GGNNCC 2 cut(s) 162, 316
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 3 cut(s) 503, 505, 611
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 4 cut(s) 473, 497, 508, 616
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 452, 649
Bst6I CTCTTC 1 cut(s) 576
BstC8I GCNNGC 5 cut(s) 16, 20, 24, 288, 720
BstDEI CTNAG 1 cut(s) 538
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 1 cut(s) 703
BstKTI GATC 4 cut(s) 476, 500, 511, 619
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 4 cut(s) 473, 497, 508, 616
BstMWI GCNNNNNNNGC 2 cut(s) 490, 791
BstNSI RCATGY 2 cut(s) 193, 722
BstPI GGTNACC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 22, 685
BtsCI GGATG 1 cut(s) 703
BtsI GCAGTG 2 cut(s) 9, 626
BtsIMutI CAGTG 2 cut(s) 9, 626
Cac8I GCNNGC 5 cut(s) 16, 20, 24, 288, 720
Cfr13I GGNCC 2 cut(s) 20, 44
Csp6I GTAC 1 cut(s) 453
CviAII CATG 3 cut(s) 190, 719, 761
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 1 cut(s) 538
DpnI GATC 4 cut(s) 475, 499, 510, 618
DpnII GATC 4 cut(s) 473, 497, 508, 616
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 47
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 252, 716
Eco91I GGTNACC 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 276
EcoRV GATATC 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 2 cut(s) 76, 724
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 3 cut(s) 193, 722, 764
FaiI YATR 8 cut(s) 41, 191, 432, 480, 720, 762, 926, 928
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 2 cut(s) 451, 779
FatI CATG 3 cut(s) 189, 718, 760
FauI CCCGC 1 cut(s) 11
FokI GGATG 1 cut(s) 710
FspBI CTAG 2 cut(s) 15, 48
HaeIII GGCC 2 cut(s) 22, 685
Hin1II CATG 3 cut(s) 193, 722, 764
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 5 cut(s) 56, 140, 439, 593, 878
HphI GGTGA 5 cut(s) 270, 412, 620, 653, 929
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 2 cut(s) 89, 445
Hpy99I CGWCG 1 cut(s) 844
HpyAV CCTTC 3 cut(s) 294, 564, 837
HpyCH4III ACNGT 2 cut(s) 452, 649
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 74, 290, 374, 664, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 490, 791
HpyF3I CTNAG 1 cut(s) 538
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 3 cut(s) 193, 722, 764
Kzo9I GATC 4 cut(s) 473, 497, 508, 616
LmnI GCTCC 3 cut(s) 166, 320, 715
LpnPI CCDG 6 cut(s) 36, 74, 177, 300, 575, 847
LweI GCATC 3 cut(s) 661, 772, 910
MaeI CTAG 2 cut(s) 15, 48
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 192, 276
MalI GATC 4 cut(s) 475, 499, 510, 618
MboI GATC 4 cut(s) 473, 497, 508, 616
MboII GAAGA 4 cut(s) 160, 358, 593, 680
MfeI CAATTG 1 cut(s) 905
MluCI AATT 7 cut(s) 28, 123, 331, 363, 894, 905, 912
MlyI GAGTC 2 cut(s) 149, 433
MmeI TCCRAC 3 cut(s) 60, 196, 536
MnlI CCTC 8 cut(s) 43, 103, 179, 290, 330, 688, 748, 837
Mph1103I ATGCAT 2 cut(s) 76, 724
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 4 cut(s) 209, 330, 357, 750
MunI CAATTG 1 cut(s) 905
Mva1269I GAATGC 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 490, 791
NdeII GATC 4 cut(s) 473, 497, 508, 616
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 3 cut(s) 193, 722, 764
NlaIV GGNNCC 2 cut(s) 162, 316
NmuCI GTSAC 2 cut(s) 192, 276
NsiI ATGCAT 2 cut(s) 76, 724
NspI RCATGY 2 cut(s) 193, 722
PaeI GCATGC 1 cut(s) 722
PctI GAATGC 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 56, 593, 878
PleI GAGTC 2 cut(s) 148, 433
PpsI GAGTC 2 cut(s) 148, 433
PpuMI RGGWCCY 1 cut(s) 44
PsiI TTATAA 2 cut(s) 432, 480
Psp5II RGGWCCY 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 162, 316
PspPI GGNCC 2 cut(s) 20, 44
PspPPI RGGWCCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SaqAI TTAA 4 cut(s) 209, 330, 357, 750
Sau3AI GATC 4 cut(s) 473, 497, 508, 616
Sau96I GGNCC 2 cut(s) 20, 44
SchI GAGTC 2 cut(s) 149, 433
SetI ASST 8 cut(s) 49, 121, 259, 409, 505, 544, 732, 750
SfaNI GCATC 3 cut(s) 661, 772, 910
SinI GGWCC 1 cut(s) 44
SphI GCATGC 1 cut(s) 722
Sse9I AATT 7 cut(s) 28, 123, 331, 363, 894, 905, 912
SsiI CCGC 1 cut(s) 18
SspI AATATT 2 cut(s) 96, 154
SspMI CTAG 2 cut(s) 15, 48
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 452, 649
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 839
TasI AATT 7 cut(s) 28, 123, 331, 363, 894, 905, 912
TfiI GAWTC 3 cut(s) 56, 593, 878
Tru1I TTAA 4 cut(s) 209, 330, 357, 750
Tru9I TTAA 4 cut(s) 209, 330, 357, 750
TscAI CASTG 2 cut(s) 16, 633
TseFI GTSAC 2 cut(s) 192, 276
Tsp45I GTSAC 2 cut(s) 192, 276
TspDTI ATGAA 3 cut(s) 17, 375, 777
TspRI CASTG 2 cut(s) 16, 633
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 123, 363, 894
XceI RCATGY 2 cut(s) 193, 722
XmaJI CCTAGG 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 2 cut(s) 15, 48
Zsp2I ATGCAT 2 cut(s) 76, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.