Rmu_sc0004000.1_g000024

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004000.1
OG0000413
Physical Location & Seq
Reverse (-)
120464 .. 121174
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004000.1_g000024.1.cds

Sequence Viewer

Length: 711 bp
atgaactccaagaaaagtatttcgtcaatttcaaaggaaagtgagcctatcaaaggcaccaacctgacgatatcaagtctctaccagacagcaagagttttcagtcaacaatcctactacaagttcgaaatcactgaaaccggtacttatctggtacgcctgcacttctttcccttttcttcggcctcaagtaatctttctactggcatttttgatatttcggattccaagttcactctgttgaacaatttcactgccaagattaatagtactagcaactctgctgtaataaaggaattctttcttggaattaatagtaccgactcatttaaactatattttacacctcaagcatcatcttttgcttttgtaaacgccattgaagtcttccttgcaccttcaaatttcacccctgagaatcacaataataatcttcctttacacacaacttaccgagtaaatgttggaggcccagtgctctcaccagataatgacacaatatggagaaactgggaaacagatgatatttatctgtctgatccaaactctgcgaaggatgtccataaccaaaataccccacttacttatgataatatggatcaagctgatgagtttgttgcatctaataattttattgccccggttttggtttacaagacagctaaagagatgaatagtacaagtagcaggccagccaattcctccaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

236

Amino Acids

26.35

Weight (kDa)

5.34

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AclWI GGATC 2 cut(s) 533, 606
AcsI RAATTY 2 cut(s) 296, 403
AfaI GTAC 5 cut(s) 145, 156, 271, 319, 679
AfiI CCNNNNNNNGG 2 cut(s) 53, 646
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 4 cut(s) 33, 244, 383, 402
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 605, 662
AluI AGCT 2 cut(s) 605, 662
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 533, 606
AoxI GGCC 3 cut(s) 183, 469, 689
ApoI RAATTY 2 cut(s) 296, 403
AseI ATTAAT 2 cut(s) 264, 312
AsiGI ACCGGT 1 cut(s) 140
Asp700I GAANNNNTTC 2 cut(s) 248, 300
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 2 cut(s) 400, 474
AsuII TTCGAA 1 cut(s) 126
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 480
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 641
BmrI ACTGGG 2 cut(s) 467, 520
BmsI GCATC 2 cut(s) 362, 629
BmuI ACTGGG 2 cut(s) 467, 520
BpiI GAAGAC 1 cut(s) 379
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 172, 333
BpuMI CCSGG 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 646
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 3 cut(s) 208, 473, 515
Bse8I GATNNNNATC 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 53, 646
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 3 cut(s) 208, 473, 515
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 3 cut(s) 185, 471, 691
BshNI GGYRCC 1 cut(s) 56
BshTI ACCGGT 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 2 cut(s) 141, 641
BslI CCNNNNNNNGG 2 cut(s) 53, 646
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 3 cut(s) 185, 471, 691
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 538, 598
BspANI GGCC 3 cut(s) 185, 471, 691
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 2 cut(s) 533, 606
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 3 cut(s) 208, 473, 515
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 2 cut(s) 538, 598
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 161, 689, 693
BstDEI CTNAG 1 cut(s) 414
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 2 cut(s) 541, 601
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 538, 598
BstSCI CCNGG 1 cut(s) 639
BstV2I GAAGAC 1 cut(s) 379
BsuRI GGCC 3 cut(s) 185, 471, 691
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 132, 252, 480
Cac8I GCNNGC 3 cut(s) 161, 689, 693
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 5 cut(s) 144, 155, 270, 318, 678
CspAI ACCGGT 1 cut(s) 140
CviJI RGCY 7 cut(s) 46, 185, 471, 605, 662, 691, 695
CviKI_1 RGCY 7 cut(s) 46, 185, 471, 605, 662, 691, 695
CviQI GTAC 5 cut(s) 144, 155, 270, 318, 678
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 540, 600
DpnII GATC 2 cut(s) 538, 598
DraI TTTAAA 1 cut(s) 331
Eco32I GATATC 1 cut(s) 72
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 296
EcoRV GATATC 1 cut(s) 72
FaiI YATR 5 cut(s) 337, 502, 564, 588, 596
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 375, 407
FokI GGATG 1 cut(s) 569
FspBI CTAG 1 cut(s) 273
HaeIII GGCC 3 cut(s) 185, 471, 691
HapII CCGG 2 cut(s) 141, 641
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 3 cut(s) 224, 323, 418
HpaII CCGG 2 cut(s) 141, 641
HphI GGTGA 2 cut(s) 400, 474
Hpy166II GTNNAC 4 cut(s) 107, 234, 373, 652
Hpy188I TCNGA 2 cut(s) 223, 538
Hpy8I GTNNAC 4 cut(s) 107, 234, 373, 652
HpyAV CCTTC 2 cut(s) 408, 547
HpyCH4V TGCA 3 cut(s) 163, 395, 620
HpyF3I CTNAG 1 cut(s) 414
Kzo9I GATC 2 cut(s) 538, 598
LweI GCATC 2 cut(s) 362, 629
MaeI CTAG 1 cut(s) 273
MalI GATC 2 cut(s) 540, 600
MboI GATC 2 cut(s) 538, 598
MboII GAAGA 3 cut(s) 171, 379, 425
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 7 cut(s) 27, 247, 296, 309, 403, 628, 697
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 3 cut(s) 196, 357, 461
MroXI GAANNNNTTC 2 cut(s) 248, 300
MseI TTAA 3 cut(s) 264, 312, 330
MspI CCGG 2 cut(s) 141, 641
MspR9I CCNGG 1 cut(s) 641
NciI CCSGG 1 cut(s) 641
NdeII GATC 2 cut(s) 538, 598
NlaIV GGNNCC 1 cut(s) 58
NspV TTCGAA 1 cut(s) 126
PdmI GAANNNNTTC 2 cut(s) 248, 300
PfeI GAWTC 2 cut(s) 224, 418
PinAI ACCGGT 1 cut(s) 140
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshBI ATTAAT 2 cut(s) 264, 312
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 470
RsaI GTAC 5 cut(s) 145, 156, 271, 319, 679
RsaNI GTAC 5 cut(s) 144, 155, 270, 318, 678
SaqAI TTAA 3 cut(s) 264, 312, 330
Sau3AI GATC 2 cut(s) 538, 598
Sau96I GGNCC 1 cut(s) 470
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 480
SetI ASST 5 cut(s) 66, 349, 400, 607, 664
SfaNI GCATC 2 cut(s) 362, 629
SfuI TTCGAA 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 187, 348
SmoI CTYRAG 2 cut(s) 187, 348
Sse9I AATT 7 cut(s) 27, 247, 296, 309, 403, 628, 697
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 639
TaqI TCGA 1 cut(s) 126
TasI AATT 7 cut(s) 27, 247, 296, 309, 403, 628, 697
TatI WGTACW 2 cut(s) 269, 677
TfiI GAWTC 2 cut(s) 224, 418
Tru1I TTAA 3 cut(s) 264, 312, 330
Tru9I TTAA 3 cut(s) 264, 312, 330
TscAI CASTG 3 cut(s) 139, 259, 480
TspDTI ATGAA 2 cut(s) 17, 686
TspRI CASTG 3 cut(s) 139, 259, 480
VspI ATTAAT 2 cut(s) 264, 312
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 2 cut(s) 296, 403
XmnI GAANNNNTTC 2 cut(s) 248, 300
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.