Rw2G014900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000413
Physical Location & Seq
Reverse (-)
17022402 .. 17024084
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014900.1

Sequence Viewer

Length: 1524 bp
ATGGAAAATCCTCATAATTGTAGAACCCTCCATATGCTTTTGTTTTCTCACCTTGTTCTTCTCCTTCAGTTCTCATCCCTTCACTTTCTCTCTTTAGCTTATGAAGTCCAAGAAAAGTATTTCGTCAATTGTGGATCAGATGCTACTGTGGACCTCAATGGTCGGAATTTCACTGGCGATTTGAAGCCTGATTCCTTCTCTTTCTCAAAGGAAAGTGAGACTATCAAAGGCACCAACCTTACGATATCAAGTCTCTACCAGACAGCAAGAGTTTTCAGTCAACAATCCTACTACAAGTTCGAAATCACTGAAACCGGTACTTATCTGGTACGCCTGCACTTCTTTCCCTTTTCTTCGGCCTCAAGAAATCTTTCTACTGGAATTTTTAATGTTTCAGATTCCAAGTTCACTCTGTTGAACAATTTCACTGCCAAGATTAATAGTACTAGCAACTCTGCTATTATAAAGGAATTCTTTCTTGGAATTAGTAGTACCGACTCATTTAAACTATATTTTACACCTCAAGCATCATCTTTTGCTTTTGCAAACGCCATTGAAGTCTTCCTCGCACCTTCAAATTTCACCCCTGAAAATCACAACAGTAATCTTCCTTTACACACAACTTACCGAGTGAATGTTGGAGGCCCAAAGCTCTCACCAGATAATGACACAATAAGGCGAAACTGGGAAACAGATGATATTTATCTATCTGATCCAAACTCAGCGAAGAATTTCCAAAAAAATACCCCGCTTTCTCACAATATTGAGGGTCAAGCTGATGATTTTGTTTTATCTACTAATTTTATTGCCCCGGATTTGGTCTACCAGACAGCTAAAGTGATGACTGACAATTCCTCCAACATAACATGGTCTTTTAGTGTGAGCAGGAATGCTAGGCACATTGTCCGTGTACACTTCTGTGACATTGTTTCTGATTCCTTTTATACTATAGTGTTTGACTTGTCTTCGAATGGCAACTTCCGTAAGCAGATCGTTGGATTGGATTCCCCTTTTGCTAAAGCGTTGGTTACTCCTTTCTACTATGATTTTGTGGTGAATGCTACTGAGTCTAAACTCATTAACATTAGTATAGCCCCTAACTTGAAGAGTACAACAGAACAAAATGCCTTTCTGAATGGGCTGGAAATATTGGAGATATTGGAGGGAACAGCTCTAATTTATAATTTGGAAGAGTCCAAGAAGGTAAATGTGGCTCTTGTGGTTGGTTCAGTTCTTGGAGGAGGCCTGTTTCTTTTCATCATTGGATTCATGCTGTGTTTGAGACACAGAAAGGCGAAAAAGAGCAGAGGTGGGATTTCCCACAACCTTGGGTTGAAGATATCTTTTGCTCAAATCTGGTCTGCAACAAACAACTTTGATCGGAAAATGCAGATAGGTGTGGGGTGGTTTGGGTATGTTTATAAAGGAACTCTCTCTAATGGCACCAAAGTGGCTGTGAAGCGTTGTAAGCAAGAGGGCAAAGGTCAGGCCAAGGCCTTCCAGAATTTGAAACAGAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

507

Amino Acids

56.72

Weight (kDa)

9.01

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 40 - 131 6.2e-08 Malectin domain
Malectin_like PF12819 42 - 385 2.4e-28 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 464, 1182, 1422
AccB1I GGYRCC 2 cut(s) 230, 1442
AccI GTMKAC 1 cut(s) 822
AciI CCGC 1 cut(s) 749
AclWI GGATC 2 cut(s) 142, 707
AcsI RAATTY 6 cut(s) 166, 381, 470, 577, 730, 1504
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 6 cut(s) 319, 330, 445, 493, 912, 1111
AfiI CCNNNNNNNGG 1 cut(s) 817
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 7 cut(s) 184, 418, 557, 576, 1105, 1336, 1510
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AleI CACNNNNGTG 2 cut(s) 918, 1448
AluBI AGCT 5 cut(s) 98, 652, 776, 833, 1172
AluI AGCT 5 cut(s) 98, 652, 776, 833, 1172
Alw26I GTCTC 3 cut(s) 212, 257, 1276
AlwI GGATC 2 cut(s) 142, 707
AoxI GGCC 5 cut(s) 357, 643, 1243, 1488, 1494
ApoI RAATTY 6 cut(s) 166, 381, 470, 577, 730, 1504
AseI ATTAAT 1 cut(s) 438
AsiGI ACCGGT 1 cut(s) 314
Asp700I GAANNNNTTC 4 cut(s) 370, 422, 474, 731
AspS9I GGNCC 2 cut(s) 151, 644
AsuC2I CCSGG 1 cut(s) 812
AsuHPI GGTGA 4 cut(s) 41, 574, 648, 1066
AsuII TTCGAA 2 cut(s) 300, 968
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 2 cut(s) 230, 1442
BbsI GAAGAC 2 cut(s) 553, 957
BcnI CCSGG 1 cut(s) 812
BcoDI GTCTC 3 cut(s) 212, 257, 1276
BfaI CTAG 2 cut(s) 447, 894
BfmI CTRYAG 1 cut(s) 948
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 812
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 151, 644
BmiI GGNNCC 2 cut(s) 232, 1444
BmrFI CCNGG 1 cut(s) 812
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 130, 536
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 2 cut(s) 553, 957
Bpu14I TTCGAA 2 cut(s) 300, 968
BpuEI CTTGAG 2 cut(s) 346, 507
BpuMI CCSGG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 810, 1327, 1491
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 1 cut(s) 817
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 178, 382, 689
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 3 cut(s) 810, 1327, 1491
BseGI GGATG 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 1 cut(s) 817
BseMII CTCAG 2 cut(s) 735, 1056
BseNI ACTGG 3 cut(s) 178, 382, 689
BseRI GAGGAG 1 cut(s) 1254
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 5 cut(s) 359, 645, 1245, 1490, 1496
BshNI GGYRCC 2 cut(s) 230, 1442
BshTI ACCGGT 1 cut(s) 314
BsiSI CCGG 2 cut(s) 315, 812
BslI CCNNNNNNNGG 1 cut(s) 817
BsmAI GTCTC 3 cut(s) 212, 257, 1276
BsmI GAATGC 2 cut(s) 895, 1063
BsnI GGCC 5 cut(s) 359, 645, 1245, 1490, 1496
Bsp119I TTCGAA 2 cut(s) 300, 968
Bsp1407I TGTACA 1 cut(s) 910
Bsp143I GATC 4 cut(s) 134, 712, 990, 1378
BspACI CCGC 1 cut(s) 749
BspANI GGCC 5 cut(s) 359, 645, 1245, 1490, 1496
BspCNI CTCAG 2 cut(s) 734, 1057
BspLI GGNNCC 2 cut(s) 232, 1444
BspPI GGATC 2 cut(s) 142, 707
BspT104I TTCGAA 2 cut(s) 300, 968
BspT107I GGYRCC 2 cut(s) 230, 1442
BsrFI RCCGGY 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 910
BsrI ACTGG 3 cut(s) 178, 382, 689
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 810, 1327, 1491
BssMI GATC 4 cut(s) 134, 712, 990, 1378
BssT1I CCWWGG 2 cut(s) 1327, 1491
Bst4CI ACNGT 2 cut(s) 148, 602
Bst6I CTCTTC 2 cut(s) 1100, 1185
BstAUI TGTACA 1 cut(s) 910
BstBI TTCGAA 2 cut(s) 300, 968
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 721, 1065
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 4 cut(s) 137, 715, 993, 1381
BstMAI GTCTC 3 cut(s) 212, 257, 1276
BstMBI GATC 4 cut(s) 134, 712, 990, 1378
BstMWI GCNNNNNNNGC 1 cut(s) 1468
BstSCI CCNGG 1 cut(s) 810
BstSFI CTRYAG 1 cut(s) 948
BstV2I GAAGAC 2 cut(s) 553, 957
BstXI CCANNNNNNTGG 1 cut(s) 1328
BsuRI GGCC 5 cut(s) 359, 645, 1245, 1490, 1496
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 3 cut(s) 171, 306, 426
Cac8I GCNNGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 151, 644
Csp6I GTAC 6 cut(s) 318, 329, 444, 492, 911, 1110
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 2 cut(s) 867, 1270
CviQI GTAC 6 cut(s) 318, 329, 444, 492, 911, 1110
DdeI CTNAG 2 cut(s) 721, 1065
DpnI GATC 4 cut(s) 136, 714, 992, 1380
DpnII GATC 4 cut(s) 134, 712, 990, 1378
DraI TTTAAA 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 1100, 1185
EarI CTCTTC 2 cut(s) 1100, 1185
Eco130I CCWWGG 2 cut(s) 1327, 1491
Eco147I AGGCCT 2 cut(s) 1245, 1496
Eco32I GATATC 2 cut(s) 246, 1341
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 470
EcoRV GATATC 2 cut(s) 246, 1341
EcoT14I CCWWGG 2 cut(s) 1327, 1491
ErhI CCWWGG 2 cut(s) 1327, 1491
FaeI CATG 2 cut(s) 870, 1273
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FatI CATG 2 cut(s) 866, 1269
FauI CCCGC 1 cut(s) 756
FauNDI CATATG 1 cut(s) 33
FblI GTMKAC 1 cut(s) 822
FokI GGATG 1 cut(s) 61
FspBI CTAG 2 cut(s) 447, 894
HaeIII GGCC 5 cut(s) 359, 645, 1245, 1490, 1496
HapII CCGG 2 cut(s) 315, 812
Hin1II CATG 2 cut(s) 870, 1273
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 8 cut(s) 191, 398, 497, 935, 1004, 1067, 1193, 1266
HpaII CCGG 2 cut(s) 315, 812
HphI GGTGA 4 cut(s) 41, 574, 648, 1066
Hpy166II GTNNAC 6 cut(s) 151, 281, 408, 823, 911, 913
Hpy188I TCNGA 7 cut(s) 139, 165, 397, 712, 934, 1134, 1383
Hpy188III TCNNGA 2 cut(s) 363, 1501
Hpy8I GTNNAC 6 cut(s) 151, 281, 408, 823, 911, 913
HpyAV CCTTC 6 cut(s) 74, 89, 205, 582, 1195, 1507
HpyCH4III ACNGT 2 cut(s) 148, 602
HpyCH4V TGCA 4 cut(s) 337, 545, 1364, 1390
HpyF10VI GCNNNNNNNGC 1 cut(s) 1468
HpyF3I CTNAG 2 cut(s) 721, 1065
Hsp92II CATG 2 cut(s) 870, 1273
Kzo9I GATC 4 cut(s) 134, 712, 990, 1378
LweI GCATC 2 cut(s) 130, 536
MaeI CTAG 2 cut(s) 447, 894
MaeIII GTNAC 2 cut(s) 920, 1027
MalI GATC 4 cut(s) 136, 714, 992, 1380
MboI GATC 4 cut(s) 134, 712, 990, 1378
MboII GAAGA 9 cut(s) 50, 345, 553, 599, 739, 957, 1117, 1202, 1348
MfeI CAATTG 1 cut(s) 127
MlyI GAGTC 3 cut(s) 491, 1076, 1202
MmeI TCCRAC 4 cut(s) 143, 619, 882, 976
MroXI GAANNNNTTC 4 cut(s) 370, 422, 474, 731
MseI TTAA 4 cut(s) 387, 438, 504, 1080
MslI CAYNNNNRTG 2 cut(s) 918, 1448
MspI CCGG 2 cut(s) 315, 812
MspR9I CCNGG 1 cut(s) 812
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 2 cut(s) 895, 1063
MwoI GCNNNNNNNGC 1 cut(s) 1468
NciI CCSGG 1 cut(s) 812
NdeI CATATG 1 cut(s) 33
NdeII GATC 4 cut(s) 134, 712, 990, 1378
NlaIII CATG 2 cut(s) 870, 1273
NlaIV GGNNCC 2 cut(s) 232, 1444
NmuCI GTSAC 1 cut(s) 920
NspV TTCGAA 2 cut(s) 300, 968
OliI CACNNNNGTG 2 cut(s) 918, 1448
PceI AGGCCT 2 cut(s) 1245, 1496
PctI GAATGC 2 cut(s) 895, 1063
PdmI GAANNNNTTC 4 cut(s) 370, 422, 474, 731
PfeI GAWTC 5 cut(s) 191, 398, 935, 1004, 1266
PinAI ACCGGT 1 cut(s) 314
PleI GAGTC 3 cut(s) 491, 1075, 1201
PpsI GAGTC 3 cut(s) 491, 1075, 1201
PshBI ATTAAT 1 cut(s) 438
PsiI TTATAA 3 cut(s) 464, 1182, 1422
PspN4I GGNNCC 2 cut(s) 232, 1444
PspPI GGNCC 2 cut(s) 151, 644
RsaI GTAC 6 cut(s) 319, 330, 445, 493, 912, 1111
RsaNI GTAC 6 cut(s) 318, 329, 444, 492, 911, 1110
RseI CAYNNNNRTG 2 cut(s) 918, 1448
SaqAI TTAA 4 cut(s) 387, 438, 504, 1080
Sau3AI GATC 4 cut(s) 134, 712, 990, 1378
Sau96I GGNCC 2 cut(s) 151, 644
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 3 cut(s) 491, 1076, 1202
ScrFI CCNGG 1 cut(s) 812
SfaNI GCATC 2 cut(s) 130, 536
SfcI CTRYAG 1 cut(s) 948
SfuI TTCGAA 2 cut(s) 300, 968
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 918, 1448
SmlI CTYRAG 2 cut(s) 361, 522
SmoI CTYRAG 2 cut(s) 361, 522
SseBI AGGCCT 2 cut(s) 1245, 1496
SsiI CCGC 1 cut(s) 749
SspI AATATT 2 cut(s) 763, 1149
SspMI CTAG 2 cut(s) 447, 894
StuI AGGCCT 2 cut(s) 1245, 1496
StyD4I CCNGG 1 cut(s) 810
StyI CCWWGG 2 cut(s) 1327, 1491
TaaI ACNGT 2 cut(s) 148, 602
TaqI TCGA 2 cut(s) 300, 968
TatI WGTACW 3 cut(s) 443, 910, 1109
TfiI GAWTC 5 cut(s) 191, 398, 935, 1004, 1266
Tru1I TTAA 4 cut(s) 387, 438, 504, 1080
Tru9I TTAA 4 cut(s) 387, 438, 504, 1080
TscAI CASTG 3 cut(s) 178, 313, 433
TseFI GTSAC 1 cut(s) 920
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 3 cut(s) 117, 1246, 1258
TspGWI ACGGA 2 cut(s) 896, 971
TspRI CASTG 3 cut(s) 178, 313, 433
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 6 cut(s) 166, 381, 470, 577, 730, 1504
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 4 cut(s) 370, 422, 474, 731
XspI CTAG 2 cut(s) 447, 894
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.