Rroxscaffold_4G00325630

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000413
Physical Location & Seq
Reverse (-)
57402268 .. 57406171
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325630.1

Sequence Viewer

Length: 1014 bp
ATGATGAATGGCAGTACTAACATAACATGGTTTTCTAGTGTGAGTAGTAAAGCTAGACACATTATCCGGGCTCACTTCTGTGACATTGTTGGTCAGCCTGGTAACATTATATTTAACTTGTATGCAAATGGCAACTTCCGCAAGGAGATCGGCAACATTTCTCAATCTTCAATTTTTCAATGTTCGGCTGTTCCCTTCTACTATGACTTTGTGGTGAATTATAGTGAGTCTGAACTCTTTAATATCAGCAGAAGACCTAAGGATGTTGCTTTTGAACAAAATGCATTTCTCAATGGTCTGGAAATATTGGAGATAATGGAGGGATTAGCTCCAACTCCCAATGTGAAAGAGTCCAAGAAGAAAGTTGTGGCTCCTGTGGTTGGTTCAGTTCTTGGAGGCCTAGCACTCATCTGCGTTTTAATAGTTGGATTTGTGTTTGGTTTCAGACACAGAAAGGCAGAAAAGCATGTGGAAACTTCAGTTTGGTCACCAATGCCTACAAATGGAGGAGGGAGTTCTCACAGCTCCGCTCTCAATCTAGATTATCTTGGGTTGAAGATATCTTTCAATGAAATTCAGTCTGCAACGAACAACTTTGACACAAAGTTGGTGATAGGTAAGGGTGGCTTTGGGAATGTTTATAAAGGCACTCTTTTGAATGGCACAAAAGTGGCTGTGAAGCGAGCTTATAAGCGAGATGAGCATGGGTCAGGATCAGGCCAAGGCCTCCTAGAATTCGAAACAGAAATCATAGTGTTATCGAAAATCCACCACCACCATCTTGTCTCCTTAATTGGTTACTGTAATGAAAGGTCTGAAATGATACTAGTGTATGAGTTCATGGAAAAAGGGAGGTTGAGAGATCATTTGTATGATTCAGACGTTCCTCGCTTGTCGTGGAATCAAAGACTTGAAATTTGTACTGGAGCAGCAAGGGATCTTCATTATCTCCACACAGGTGCAGCTAGGGGGAATCATTCACCGAGATGTCAAGTCCACCAACATATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

37.47

Weight (kDa)

8.8

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 202 - 319 1.9e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 203 - 319 3.9e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 642, 690
AccBSI CCGCTC 1 cut(s) 530
AciI CCGC 2 cut(s) 139, 528
AclWI GGATC 2 cut(s) 721, 945
AcsI RAATTY 3 cut(s) 573, 734, 915
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 16, 922
AfiI CCNNNNNNNGG 2 cut(s) 380, 503
AgsI TTSAA 7 cut(s) 171, 179, 275, 556, 568, 658, 914
AhlI ACTAGT 1 cut(s) 826
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 3 cut(s) 78, 668, 957
AluBI AGCT 5 cut(s) 53, 329, 525, 686, 965
AluI AGCT 5 cut(s) 53, 329, 525, 686, 965
Alw26I GTCTC 1 cut(s) 790
AlwI GGATC 2 cut(s) 721, 945
AoxI GGCC 3 cut(s) 397, 718, 724
ApeKI GCWGC 2 cut(s) 929, 962
ApoI RAATTY 3 cut(s) 573, 734, 915
ArsI GACNNNNNNTTYG 2 cut(s) 900, 932
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 4 cut(s) 226, 480, 622, 972
AsuII TTCGAA 1 cut(s) 738
AxyI CCTNAGG 1 cut(s) 258
BaeI ACNNNNGTAYC 2 cut(s) 815, 848
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 941, 974
BccI CCATC 1 cut(s) 786
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 790
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 7 cut(s) 36, 54, 401, 539, 731, 827, 966
BisI GCNGC 2 cut(s) 930, 963
BlsI GCNGC 2 cut(s) 931, 964
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 68, 99
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 68, 99
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 945
Bpu14I TTCGAA 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 503
Bse1I ACTGG 1 cut(s) 928
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 380, 503
BseNI ACTGG 1 cut(s) 928
BseRI GAGGAG 1 cut(s) 522
BseXI GCAGC 2 cut(s) 941, 974
BsgI GTGCAG 1 cut(s) 981
BshFI GGCC 3 cut(s) 399, 720, 726
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 380, 503
BsmAI GTCTC 1 cut(s) 790
BsnI GGCC 3 cut(s) 399, 720, 726
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 4 cut(s) 147, 713, 862, 937
BspACI CCGC 2 cut(s) 139, 528
BspANI GGCC 3 cut(s) 399, 720, 726
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 2 cut(s) 721, 945
BspT104I TTCGAA 1 cut(s) 738
BsrBI CCGCTC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 928
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 4 cut(s) 147, 713, 862, 937
BssT1I CCWWGG 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 803
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 486
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 4 cut(s) 150, 716, 865, 940
BstMAI GTCTC 1 cut(s) 790
BstMBI GATC 4 cut(s) 147, 713, 862, 937
BstMWI GCNNNNNNNGC 2 cut(s) 138, 700
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 470
BstPI GGTNACC 1 cut(s) 486
BstSCI CCNGG 2 cut(s) 66, 97
BstV1I GCAGC 2 cut(s) 941, 974
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 937
BstYI RGATCY 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 3 cut(s) 399, 720, 726
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 684
Csp6I GTAC 2 cut(s) 15, 921
CviAII CATG 4 cut(s) 27, 467, 704, 841
CviQI GTAC 2 cut(s) 15, 921
DdeI CTNAG 1 cut(s) 258
DpnI GATC 4 cut(s) 149, 715, 864, 939
DpnII GATC 4 cut(s) 147, 713, 862, 937
Eco130I CCWWGG 1 cut(s) 721
Eco147I AGGCCT 2 cut(s) 399, 726
Eco24I GRGCYC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 561
Eco57I CTGAAG 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 4 cut(s) 30, 470, 707, 844
FalI AAGNNNNNCTT 4 cut(s) 611, 643, 636, 668
FatI CATG 4 cut(s) 26, 466, 703, 840
Fnu4HI GCNGC 2 cut(s) 930, 963
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 930, 963
FspBI CTAG 7 cut(s) 36, 54, 401, 539, 731, 827, 966
GluI GCNGC 2 cut(s) 930, 963
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 3 cut(s) 399, 720, 726
HapII CCGG 1 cut(s) 67
Hin1II CATG 4 cut(s) 30, 470, 707, 844
HinfI GANTC 5 cut(s) 227, 350, 875, 901, 973
HpaII CCGG 1 cut(s) 67
HphI GGTGA 4 cut(s) 226, 480, 622, 972
Hpy166II GTNNAC 1 cut(s) 997
Hpy188I TCNGA 4 cut(s) 232, 446, 817, 880
Hpy188III TCNNGA 3 cut(s) 299, 539, 711
Hpy8I GTNNAC 1 cut(s) 997
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 4 cut(s) 125, 284, 584, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 700
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 882
Hsp92II CATG 4 cut(s) 30, 470, 707, 844
Kzo9I GATC 4 cut(s) 147, 713, 862, 937
LmnI GCTCC 4 cut(s) 334, 376, 530, 926
LpnPI CCDG 9 cut(s) 80, 84, 111, 284, 387, 696, 702, 909, 942
Lsp1109I GCAGC 2 cut(s) 941, 974
MaeI CTAG 7 cut(s) 36, 54, 401, 539, 731, 827, 966
MaeII ACGT 1 cut(s) 882
MaeIII GTNAC 4 cut(s) 80, 101, 486, 797
MalI GATC 4 cut(s) 149, 715, 864, 939
MbiI CCGCTC 1 cut(s) 530
MboI GATC 4 cut(s) 147, 713, 862, 937
MboII GAAGA 5 cut(s) 159, 264, 370, 568, 932
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 6 cut(s) 171, 217, 573, 734, 792, 915
MlyI GAGTC 2 cut(s) 236, 359
MmeI TCCRAC 2 cut(s) 356, 406
MnlI CCTC 7 cut(s) 313, 389, 500, 503, 737, 846, 897
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 4 cut(s) 114, 240, 419, 791
MslI CAYNNNNRTG 5 cut(s) 78, 668, 870, 957, 985
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 68, 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 138, 700
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 147, 713, 862, 937
NlaIII CATG 4 cut(s) 30, 470, 707, 844
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 2 cut(s) 80, 486
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 738
OliI CACNNNNGTG 3 cut(s) 78, 668, 957
PceI AGGCCT 2 cut(s) 399, 726
PfeI GAWTC 3 cut(s) 875, 901, 973
PkrI GCNGC 2 cut(s) 931, 964
PleI GAGTC 2 cut(s) 235, 358
PpsI GAGTC 2 cut(s) 235, 358
PsiI TTATAA 2 cut(s) 642, 690
Psp6I CCWGG 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 486
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 2 cut(s) 16, 922
RsaNI GTAC 2 cut(s) 15, 921
RseI CAYNNNNRTG 5 cut(s) 78, 668, 870, 957, 985
SaqAI TTAA 4 cut(s) 114, 240, 419, 791
SatI GCNGC 2 cut(s) 930, 963
Sau3AI GATC 4 cut(s) 147, 713, 862, 937
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 2 cut(s) 236, 359
ScrFI CCNGG 2 cut(s) 68, 99
SduI GDGCHC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 738
SmiMI CAYNNNNRTG 5 cut(s) 78, 668, 870, 957, 985
SpeI ACTAGT 1 cut(s) 826
Sse9I AATT 6 cut(s) 171, 217, 573, 734, 792, 915
SseBI AGGCCT 2 cut(s) 399, 726
SsiI CCGC 2 cut(s) 139, 528
SspI AATATT 1 cut(s) 306
SspMI CTAG 7 cut(s) 36, 54, 401, 539, 731, 827, 966
StuI AGGCCT 2 cut(s) 399, 726
StyD4I CCNGG 2 cut(s) 66, 97
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 803
TaiI ACGT 1 cut(s) 885
TaqI TCGA 2 cut(s) 738, 761
TasI AATT 6 cut(s) 171, 217, 573, 734, 792, 915
TatI WGTACW 2 cut(s) 14, 920
TfiI GAWTC 3 cut(s) 875, 901, 973
Tru1I TTAA 4 cut(s) 114, 240, 419, 791
Tru9I TTAA 4 cut(s) 114, 240, 419, 791
TseFI GTSAC 2 cut(s) 80, 486
TseI GCWGC 2 cut(s) 929, 962
Tsp45I GTSAC 2 cut(s) 80, 486
TspDTI ATGAA 5 cut(s) 20, 585, 822, 829, 932
XapI RAATTY 3 cut(s) 573, 734, 915
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 470
XspI CTAG 7 cut(s) 36, 54, 401, 539, 731, 827, 966
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.