Rroxscaffold_159G00433010

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000413
Physical Location & Seq
Forward (+)
753151 .. 754903
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00433010.1

Sequence Viewer

Length: 570 bp
ATGGAGGTTGATATATATGAGTCTATGACTAAAGTTAAACACCCAGCATGCCTAAAGCTGTTGCATTGGACTGGAGCTTTGTTTAAAGCACATCCAACTGTGAACAATTATGAGCTCATTAATATTACCATAAAACCAAATATTGATGCTACTTTTGGAAATGCATTTCTAAATGGTTTGGAAATATTGGAGATATTGGATGGATTAGCTCCAATTCCTACTGTTGGAAGCCAAGAAGAGAAACATAAATGTATTGGCTCTTGTGGTTGGTTCAGCTGTAGAGAAATGCACAGCACCACACATTCTGTTACACGAAGTCCGACTGTAACTCTTAATACCCATCGTGTGGAGTCGCACGTGCGTCTTCATCTTCGTCTTCGTCTTCCTCTGAAAACCGCAAAAAAACTTTCCAGTTCGGAGAAAATCAAACCTGGCATGAATGATTCTTCTTTCTGCGAACCCACGACAAGCTTCTTTCTATTTGGGCAGCTACGACAACGCGTCTCGCTCCGAGCTTCTGAAGACTCAGGGAATCTCTCGTCTTCTCAACGTAAGGGCACAGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

9.18

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 346
AccII CGCG 1 cut(s) 501
AciI CCGC 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 540
AcvI CACGTG 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 224, 346
AflIII ACRYGT 1 cut(s) 499
AhdI GACNNNNNGTC 1 cut(s) 500
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 8 cut(s) 58, 77, 115, 209, 276, 471, 490, 515
AluI AGCT 8 cut(s) 58, 77, 115, 209, 276, 471, 490, 515
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AseI ATTAAT 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 117
BbrPI CACGTG 1 cut(s) 358
BbsI GAAGAC 5 cut(s) 356, 368, 374, 528, 534
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 499
BccI CCATC 2 cut(s) 194, 348
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 508
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 488
BlsI GCNGC 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 432
BmeRI GACNNNNNGTC 1 cut(s) 500
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 5 cut(s) 356, 368, 374, 528, 534
BpmI CTGGAG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 346
Bse1I ACTGG 2 cut(s) 76, 411
BseBI CCWGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 91, 205
BseLI CCNNNNNNNGG 2 cut(s) 224, 346
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 76, 411
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 1 cut(s) 499
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 224, 346
BsmAI GTCTC 1 cut(s) 508
BsmBI CGTCTC 1 cut(s) 508
Bsp1286I GDGCHC 2 cut(s) 117, 560
BspACI CCGC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 539
BspFNI CGCG 1 cut(s) 501
BsrI ACTGG 2 cut(s) 76, 411
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 4 cut(s) 100, 223, 325, 562
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 91, 205
BstFNI CGCG 1 cut(s) 501
BstMAI GTCTC 1 cut(s) 508
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 499
BstV2I GAAGAC 5 cut(s) 356, 368, 374, 528, 534
BtsCI GGATG 2 cut(s) 91, 205
Cac8I GCNNGC 1 cut(s) 49
CseI GACGC 2 cut(s) 350, 490
CviAII CATG 2 cut(s) 48, 436
DdeI CTNAG 1 cut(s) 526
DraI TTTAAA 1 cut(s) 85
DriI GACNNNNNGTC 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 231
Eam1105I GACNNNNNGTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 540
Eco72I CACGTG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 508
FaeI CATG 2 cut(s) 51, 439
FaiI YATR 9 cut(s) 14, 16, 18, 26, 49, 111, 131, 246, 437
FatI CATG 2 cut(s) 47, 435
Fnu4HI GCNGC 1 cut(s) 488
FokI GGATG 2 cut(s) 78, 212
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 488
GluI GCNGC 1 cut(s) 488
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 93
HgaI GACGC 2 cut(s) 350, 490
Hin1II CATG 2 cut(s) 51, 439
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 5 cut(s) 20, 350, 443, 524, 532
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 321, 390, 418, 512, 520
Hpy8I GTNNAC 1 cut(s) 103
HpyCH4III ACNGT 4 cut(s) 100, 223, 325, 562
HpyCH4IV ACGT 2 cut(s) 357, 550
HpyCH4V TGCA 3 cut(s) 64, 164, 289
HpyF3I CTNAG 1 cut(s) 526
HpySE526I ACGT 2 cut(s) 357, 550
Hsp92II CATG 2 cut(s) 51, 439
LmnI GCTCC 3 cut(s) 74, 214, 513
LpnPI CCDG 6 cut(s) 57, 57, 417, 424, 444, 513
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 136
MaeII ACGT 2 cut(s) 357, 550
MaeIII GTNAC 3 cut(s) 307, 325, 562
MboII GAAGA 8 cut(s) 248, 356, 362, 368, 374, 438, 533, 534
MhlI GDGCHC 2 cut(s) 117, 560
MluCI AATT 2 cut(s) 106, 213
MluI ACGCGT 1 cut(s) 499
MlyI GAGTC 3 cut(s) 29, 359, 518
MmeI TCCRAC 3 cut(s) 119, 205, 344
MnlI CCTC 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 4 cut(s) 36, 84, 120, 333
MspA1I CMGCKG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
MvnI CGCG 1 cut(s) 501
NlaIII CATG 2 cut(s) 51, 439
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 1 cut(s) 51
PaeI GCATGC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 443, 532
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 1 cut(s) 489
PleI GAGTC 3 cut(s) 28, 358, 518
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
PpsI GAGTC 3 cut(s) 28, 358, 518
Ppu21I YACGTR 1 cut(s) 358
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 430
PspCI CACGTG 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 36, 84, 120, 333
SatI GCNGC 1 cut(s) 488
SchI GAGTC 3 cut(s) 29, 359, 518
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 2 cut(s) 117, 560
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 277
SphI GCATGC 1 cut(s) 51
Sse9I AATT 2 cut(s) 106, 213
SsiI CCGC 1 cut(s) 396
SspI AATATT 3 cut(s) 124, 142, 186
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 4 cut(s) 100, 223, 325, 562
TaiI ACGT 2 cut(s) 360, 553
TasI AATT 2 cut(s) 106, 213
TfiI GAWTC 2 cut(s) 443, 532
Tru1I TTAA 4 cut(s) 36, 84, 120, 333
Tru9I TTAA 4 cut(s) 36, 84, 120, 333
TseI GCWGC 1 cut(s) 487
TspDTI ATGAA 2 cut(s) 356, 452
Van91I CCANNNNNTGG 1 cut(s) 346
VspI ATTAAT 1 cut(s) 120
XceI RCATGY 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.