Rh1CG063700

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000413
Physical Location & Seq
Forward (+)
12604023 .. 12625466
21444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG063700.1

Sequence Viewer

Length: 1249 bp
ATGGGTATTGATATTCCTAATCGAACTGAAAAAATGGGAGGAGCTGATGATTATTTCATCAACTGTGGTTCACATGATGATGTGAGCCTCACACCTGGCCAGAATTTCTCTGGGGAATCGAAGCCTGTAGGTTACTCTTTCTCCAAAAGCAAGGCTGTCAAAGACATCAACCAGTTGCCAGATATATCACCTCTATATAAGACAGCAAGAAGTTTCAATAAACCATTCTACTACCAGTTCAGCATCACTGAAGATGGTAATTATCTGGTACGCTTACATTTCTCAGCTTTCTCCTCCTCCTCCACAAATAATCTCTCCACGGCTGTTTTTGGTGTTTTGGATTCTAAGAATTTCACACTGTTGAACAATTTCACCGCCAAGAACACTACCTACTCCCCTGTGATAAAGGAATTCTTTCTCCGAATTGATATTACCGACTCATTTAGACTATATTTTACTCCTCAACCGTCATCTTTTGCATTTGTAAATGCCATAGAATTATTCCCTGCCCCTGCAGATTTCATCGCTGAGAACTATACTAGTAATCTCCCTTTACACACAGTTTACAGACTCACCGTTGGAGGCTCACCAGTAAATGACACAATATGGAGAAATAAAGCTAGACACATTGTTCGGGCTCACTTCTGTGACATTGTTGGTCAGCCTGGTAACAGTATATTTAACTTGTATGCAAATGCCAACTTCCGCAAGGAGATCAGCAACATTTCTCAATCTTCAATTTTTCAATATTCGGCTGTTCCCTTCTACTATGACTTTGTGGTGAATTATAGTGAGTCTAAACTCTTTAATATCAGCATAAGACCTAAGGATGGTGCTTTTGAACAAAATGCATTTCTCAATGGTCTGGAAATATTGGAGATAGTGGAGGGATTAGCTCCAACTCCCAATGTGAAAGAGTCCAAGAAGAAAGTTGTGGCTCCTGTGATTGATCCTAGCTCACTAAGAACTTTTGGTGAGACGGCTGAGAAGTGTTTGCAAGAAGATGCTTCTGATAGGCCAACAATGGCCGATGTGCTGTGGGATTTGGAATATGCATTACAGCTTCAGAAAACAACAAAGCTTAAAGAGGCTCATGAGGACAGCACCACCATTGATGCTTCATCAGCAGCATTCGGTTTGCCAATTGTTCAGCGTTTTCCTTCACTTGGTTTGACAACAAATGGAGATGATATGAGGGACAGCGACTTGGACACAACAGAAAACAAAATTTTCTCCCAATTGAAAATTG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

416

Amino Acids

46.49

Weight (kDa)

5.29

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 19 - 101 4.2e-07 Malectin domain
Malectin_like PF12819 20 - 196 1.4e-10 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 375, 706
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 2 cut(s) 97, 1026
AcsI RAATTY 4 cut(s) 103, 349, 410, 1227
AcuI CTGAAG 2 cut(s) 270, 1049
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 830, 1166
AgsI TTSAA 6 cut(s) 217, 364, 738, 746, 842, 1243
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 2 cut(s) 94, 664
AleI CACNNNNGTG 1 cut(s) 645
AluBI AGCT 7 cut(s) 44, 287, 620, 896, 957, 1063, 1081
AluI AGCT 7 cut(s) 44, 287, 620, 896, 957, 1063, 1081
Alw26I GTCTC 1 cut(s) 971
AlwI GGATC 1 cut(s) 944
AoxI GGCC 3 cut(s) 97, 1016, 1026
ApeKI GCWGC 1 cut(s) 1127
ApoI RAATTY 4 cut(s) 103, 349, 410, 1227
ArsI GACNNNNNNTTYG 2 cut(s) 615, 647
Asp700I GAANNNNTTC 2 cut(s) 368, 414
AsuHPI GGTGA 6 cut(s) 180, 364, 565, 579, 793, 986
AxyI CCTNAGG 1 cut(s) 825
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 1 cut(s) 640
BbvI GCAGC 1 cut(s) 1139
BccI CCATC 2 cut(s) 248, 824
BceAI ACGGC 2 cut(s) 336, 996
BciT130I CCWGG 2 cut(s) 96, 666
BcoDI GTCTC 1 cut(s) 971
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 3 cut(s) 540, 621, 954
BfmI CTRYAG 2 cut(s) 126, 513
BisI GCNGC 1 cut(s) 1128
BlsI GCNGC 1 cut(s) 1129
Bme1390I CCNGG 2 cut(s) 96, 666
BmiI GGNNCC 1 cut(s) 939
BmrFI CCNGG 2 cut(s) 96, 666
BmsI GCATC 3 cut(s) 252, 994, 1105
BsaJI CCNNGG 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 830, 1166
Bse1I ACTGG 3 cut(s) 172, 235, 590
Bse21I CCTNAGG 1 cut(s) 825
BseBI CCWGG 2 cut(s) 96, 666
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 835
BseLI CCNNNNNNNGG 2 cut(s) 830, 1166
BseMII CTCAG 3 cut(s) 297, 519, 975
BseNI ACTGG 3 cut(s) 172, 235, 590
BseRI GAGGAG 5 cut(s) 54, 283, 286, 289, 450
BseXI GCAGC 1 cut(s) 1139
BshFI GGCC 3 cut(s) 99, 1018, 1028
BslFI GGGAC 1 cut(s) 1211
BslI CCNNNNNNNGG 2 cut(s) 830, 1166
BsmAI GTCTC 1 cut(s) 971
BsmBI CGTCTC 1 cut(s) 971
BsmFI GGGAC 1 cut(s) 1211
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 3 cut(s) 99, 1018, 1028
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 2 cut(s) 714, 949
BspACI CCGC 2 cut(s) 375, 706
BspANI GGCC 3 cut(s) 99, 1018, 1028
BspCNI CTCAG 3 cut(s) 296, 520, 976
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 1 cut(s) 939
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 1 cut(s) 944
BsrI ACTGG 3 cut(s) 172, 235, 590
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 2 cut(s) 714, 949
Bst2UI CCWGG 2 cut(s) 96, 666
Bst4CI ACNGT 6 cut(s) 65, 360, 468, 562, 577, 674
BstDEI CTNAG 6 cut(s) 283, 345, 528, 825, 962, 984
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 835
BstKTI GATC 2 cut(s) 717, 952
BstMAI GTCTC 1 cut(s) 971
BstMBI GATC 2 cut(s) 714, 949
BstMWI GCNNNNNNNGC 1 cut(s) 1124
BstNI CCWGG 2 cut(s) 96, 666
BstSCI CCNGG 2 cut(s) 94, 664
BstSFI CTRYAG 2 cut(s) 126, 513
BstV1I GCAGC 1 cut(s) 1139
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 3 cut(s) 99, 1018, 1028
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 835
BtsIMutI CAGTG 2 cut(s) 246, 356
CciI TCATGA 1 cut(s) 1093
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 74, 1094
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 6 cut(s) 283, 345, 528, 825, 962, 984
DpnI GATC 2 cut(s) 716, 951
DpnII GATC 2 cut(s) 714, 949
EaeI YGGCCR 2 cut(s) 97, 1026
Eco24I GRGCYC 1 cut(s) 640
Eco57I CTGAAG 2 cut(s) 270, 1049
Eco81I CCTNAGG 1 cut(s) 825
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 94, 664
EcoT22I ATGCAT 2 cut(s) 853, 1057
EcoT38I GRGCYC 1 cut(s) 640
Esp3I CGTCTC 1 cut(s) 971
FaeI CATG 2 cut(s) 77, 1097
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 1211
FatI CATG 2 cut(s) 73, 1093
Fnu4HI GCNGC 1 cut(s) 1128
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 1 cut(s) 640
Fsp4HI GCNGC 1 cut(s) 1128
FspBI CTAG 3 cut(s) 540, 621, 954
GluI GCNGC 1 cut(s) 1128
HaeIII GGCC 3 cut(s) 99, 1018, 1028
Hin1II CATG 2 cut(s) 77, 1097
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 6 cut(s) 116, 341, 437, 570, 794, 917
HphI GGTGA 6 cut(s) 180, 364, 565, 579, 793, 986
Hpy166II GTNNAC 2 cut(s) 71, 565
Hpy188I TCNGA 3 cut(s) 422, 1012, 1068
Hpy188III TCNNGA 2 cut(s) 866, 1094
Hpy8I GTNNAC 2 cut(s) 71, 565
HpyAV CCTTC 2 cut(s) 772, 1170
HpyCH4III ACNGT 6 cut(s) 65, 360, 468, 562, 577, 674
HpyCH4V TGCA 6 cut(s) 479, 515, 692, 851, 997, 1055
HpyF10VI GCNNNNNNNGC 1 cut(s) 1124
HpyF3I CTNAG 6 cut(s) 283, 345, 528, 825, 962, 984
Hsp92II CATG 2 cut(s) 77, 1097
Kzo9I GATC 2 cut(s) 714, 949
LmnI GCTCC 3 cut(s) 41, 901, 943
Lsp1109I GCAGC 1 cut(s) 1139
LweI GCATC 3 cut(s) 252, 994, 1105
MaeI CTAG 3 cut(s) 540, 621, 954
MaeIII GTNAC 3 cut(s) 131, 647, 668
MalI GATC 2 cut(s) 716, 951
MboI GATC 2 cut(s) 714, 949
MboII GAAGA 4 cut(s) 263, 726, 937, 1013
MfeI CAATTG 2 cut(s) 1143, 1238
MhlI GDGCHC 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 4 cut(s) 431, 564, 803, 926
MmeI TCCRAC 2 cut(s) 559, 923
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 2 cut(s) 853, 1057
MroXI GAANNNNTTC 2 cut(s) 368, 414
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 681, 807, 1083
MslI CAYNNNNRTG 2 cut(s) 78, 645
Msp20I TGGCCA 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 96, 666
MunI CAATTG 2 cut(s) 1143, 1238
Mva1269I GAATGC 1 cut(s) 1130
MvaI CCWGG 2 cut(s) 96, 666
MwoI GCNNNNNNNGC 1 cut(s) 1124
NdeII GATC 2 cut(s) 714, 949
NlaIII CATG 2 cut(s) 77, 1097
NlaIV GGNNCC 1 cut(s) 939
NmuCI GTSAC 1 cut(s) 647
NsiI ATGCAT 2 cut(s) 853, 1057
OliI CACNNNNGTG 1 cut(s) 645
PagI TCATGA 1 cut(s) 1093
PctI GAATGC 1 cut(s) 1130
PdmI GAANNNNTTC 2 cut(s) 368, 414
PfeI GAWTC 2 cut(s) 116, 341
PkrI GCNGC 1 cut(s) 1129
PleI GAGTC 4 cut(s) 431, 564, 802, 925
PpsI GAGTC 4 cut(s) 431, 564, 802, 925
Psp6I CCWGG 2 cut(s) 94, 664
PspGI CCWGG 2 cut(s) 94, 664
PspN4I GGNNCC 1 cut(s) 939
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PstI CTGCAG 1 cut(s) 517
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 78, 645
SaqAI TTAA 3 cut(s) 681, 807, 1083
SatI GCNGC 1 cut(s) 1128
Sau3AI GATC 2 cut(s) 714, 949
SchI GAGTC 4 cut(s) 431, 564, 803, 926
ScrFI CCNGG 2 cut(s) 96, 666
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 3 cut(s) 252, 994, 1105
SfcI CTRYAG 2 cut(s) 126, 513
SmiMI CAYNNNNRTG 2 cut(s) 78, 645
SpeI ACTAGT 1 cut(s) 539
SsiI CCGC 2 cut(s) 375, 706
SspI AATATT 2 cut(s) 749, 873
SspMI CTAG 3 cut(s) 540, 621, 954
StyD4I CCNGG 2 cut(s) 94, 664
TaaI ACNGT 6 cut(s) 65, 360, 468, 562, 577, 674
TaqI TCGA 2 cut(s) 22, 119
TfiI GAWTC 2 cut(s) 116, 341
Tru1I TTAA 3 cut(s) 681, 807, 1083
Tru9I TTAA 3 cut(s) 681, 807, 1083
TscAI CASTG 2 cut(s) 253, 363
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 1 cut(s) 1127
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 3 cut(s) 46, 511, 1110
TspRI CASTG 2 cut(s) 253, 363
XapI RAATTY 4 cut(s) 103, 349, 410, 1227
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmnI GAANNNNTTC 2 cut(s) 368, 414
XspI CTAG 3 cut(s) 540, 621, 954
Zsp2I ATGCAT 2 cut(s) 853, 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.