MD15G1289700.v1.1

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000413
Physical Location & Seq
Reverse (-)
26767858 .. 26768448
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1289700.v1.1.491

Sequence Viewer

Length: 591 bp
ATGCTGTTGAAGAATTTCACTGCTAAGAATAGTAGTGGCAATTCTACGATAAGGGAGTTCTTTCTTGGCATTGATCCTGGCTCATTTAGGATGTACTTTACGCCTCGTGGATCGTCTTTTGCATTTGTAAATGCCATTGAAGTCTTCCTTGCCCTTGCAAATTTCAGCCCTAAGAATTACACCAGTAGTTCCTCTTTAGTTCTACATACAATTTACAGGGTGAATGTTGGAGGTCAGGAACTCCGACCAGGTGAGGACACACTATGGCGAAACTGGGATTCTAATGATCTTTATCTGAAGAATTCAAACCCTACAGAGGAAGTTGGACCTTCACAGACGCCTAAGTACCAGGCGTATGAATATGATGGTTTTGTTGTTGCTGCTAATGATTTTATTGCCCCAAATTTAGTTTACGAGACTGCCAAAGTAATGGACAATCGTAATAGCAACCCATCCACTTTGTTCAACATAACCTGGTCGTTTAATGTGCGCAAGAACGCTAAACATCTTGTCCGGGCACACTTTTGTGACCTTGTTGGCCAAATTGCCGACATTGTTTTTAAACTTGTATTCAAATGGAAACTTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

22.31

Weight (kDa)

8.95

Isoelectric Point (pI)

23.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 16 - 180 2.6e-11 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 491
AclWI GGATC 2 cut(s) 68, 118
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 4 cut(s) 13, 160, 301, 403
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 2 cut(s) 95, 347
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 5 cut(s) 10, 140, 306, 466, 574
AjnI CCWGG 4 cut(s) 76, 247, 348, 473
AleI CACNNNNGTG 1 cut(s) 525
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 68, 118
AoxI GGCC 1 cut(s) 538
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 4 cut(s) 13, 160, 301, 403
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 515
AsuHPI GGTGA 2 cut(s) 232, 263
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 520
BalI TGGCCA 1 cut(s) 540
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 367
BccI CCATC 2 cut(s) 359, 460
BciT130I CCWGG 4 cut(s) 78, 249, 350, 475
BcnI CCSGG 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 5 cut(s) 78, 249, 350, 475, 515
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmrFI CCNGG 5 cut(s) 78, 249, 350, 475, 515
BmrI ACTGGG 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 183, 278
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 4 cut(s) 78, 249, 350, 475
BseGI GGATG 2 cut(s) 96, 452
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 183, 278
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 540
BsiSI CCGG 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 1 cut(s) 540
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 3 cut(s) 73, 110, 286
BspANI GGCC 1 cut(s) 540
BspPI GGATC 2 cut(s) 68, 118
BsrI ACTGG 2 cut(s) 183, 278
BssMI GATC 3 cut(s) 73, 110, 286
BssNI GRCGYC 1 cut(s) 338
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 4 cut(s) 78, 249, 350, 475
BstACI GRCGYC 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 24, 171, 342
BstF5I GGATG 2 cut(s) 96, 452
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 3 cut(s) 76, 113, 289
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 73, 110, 286
BstNI CCWGG 4 cut(s) 78, 249, 350, 475
BstSCI CCNGG 5 cut(s) 76, 247, 348, 473, 513
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 430
BsuRI GGCC 1 cut(s) 540
BtsCI GGATG 2 cut(s) 96, 452
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 346
CsiI ACCWGGT 2 cut(s) 247, 473
Csp6I GTAC 2 cut(s) 94, 346
CviJI RGCY 3 cut(s) 81, 168, 540
CviKI_1 RGCY 3 cut(s) 81, 168, 540
CviQI GTAC 2 cut(s) 94, 346
DdeI CTNAG 3 cut(s) 24, 171, 342
DpnI GATC 3 cut(s) 75, 112, 288
DpnII GATC 3 cut(s) 73, 110, 286
DraI TTTAAA 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 4 cut(s) 76, 247, 348, 473
FaiI YATR 5 cut(s) 207, 265, 357, 363, 470
FalI AAGNNNNNCTT 2 cut(s) 132, 164
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 103, 439
Fsp4HI GCNGC 1 cut(s) 381
FspI TGCGCA 1 cut(s) 491
GlaI GCGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 540
HapII CCGG 1 cut(s) 514
HgaI GACGC 1 cut(s) 346
HhaI GCGC 1 cut(s) 492
Hin1I GRCGYC 1 cut(s) 338
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 514
HphI GGTGA 2 cut(s) 232, 263
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 2 cut(s) 245, 297
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 122, 158
HpyF3I CTNAG 3 cut(s) 24, 171, 342
Hsp92I GRCGYC 1 cut(s) 338
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 3 cut(s) 73, 110, 286
Lsp1109I GCAGC 1 cut(s) 367
MabI ACCWGGT 2 cut(s) 247, 473
MaeIII GTNAC 1 cut(s) 527
MalI GATC 3 cut(s) 75, 112, 288
MboI GATC 3 cut(s) 73, 110, 286
MboII GAAGA 3 cut(s) 22, 136, 310
MhlI GDGCHC 1 cut(s) 520
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 8 cut(s) 13, 40, 160, 175, 210, 301, 403, 543
MluNI TGGCCA 1 cut(s) 540
MmeI TCCRAC 3 cut(s) 208, 268, 304
MnlI CCTC 5 cut(s) 114, 202, 224, 247, 310
Mox20I TGGCCA 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 540
MseI TTAA 2 cut(s) 483, 561
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 540
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 5 cut(s) 78, 249, 350, 475, 515
MvaI CCWGG 4 cut(s) 78, 249, 350, 475
NciI CCSGG 1 cut(s) 515
NdeII GATC 3 cut(s) 73, 110, 286
NmuCI GTSAC 1 cut(s) 527
NsbI TGCGCA 1 cut(s) 491
OliI CACNNNNGTG 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 382
Psp6I CCWGG 4 cut(s) 76, 247, 348, 473
PspGI CCWGG 4 cut(s) 76, 247, 348, 473
PspPI GGNCC 1 cut(s) 326
RsaI GTAC 2 cut(s) 95, 347
RsaNI GTAC 2 cut(s) 94, 346
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 2 cut(s) 483, 561
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 73, 110, 286
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 5 cut(s) 78, 249, 350, 475, 515
SduI GDGCHC 1 cut(s) 520
SetI ASST 5 cut(s) 235, 253, 331, 476, 534
SexAI ACCWGGT 2 cut(s) 247, 473
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 525
Sse9I AATT 8 cut(s) 13, 40, 160, 175, 210, 301, 403, 543
StyD4I CCNGG 5 cut(s) 76, 247, 348, 473, 513
TasI AATT 8 cut(s) 13, 40, 160, 175, 210, 301, 403, 543
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 483, 561
Tru9I TTAA 2 cut(s) 483, 561
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 4 cut(s) 13, 160, 301, 403
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.