Rroxscaffold_2G00098070

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000413
Physical Location & Seq
Forward (+)
19218622 .. 19221048
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098070.1

Sequence Viewer

Length: 2427 bp
ATGGAAAATCCTCATAATTGTAGAACCCTCCATATCCTTTTGTGTTCTCAGCTTGTTCTTCTCCTTCAGTTCTCATCCCTTCACTTTCTCTCTTTAGCTTATGAACGCCAAGAAAAGTATTTCGTCAATTGTGGATCAGATGCTAATGTGGACCTCAATGGTCGGAATTTCATTGGGGATTTGAAGCCTGATTCCTTCTCTTTCTCAAAGGAAAGTGAGACTATCAAAGGCACCAACCTTACGATATTAAGTCTCTACCAGACAGCAAGAGTTTTCAGTAAACAATCCCACTACAATTTCGAAATCACTGAAACCGGTACTTATCTGGTACGCCTGCACTTCTTTCCCTTTTCTTCGGCCTCAAGTAATCTTTCTACCGGCATTTTTGATGTTTCGGATTCCAAGTTCACTCTGTTGAACAATTTCACTGCCAAGATTAATAGTACTAGCAACTCTGCTATAATAAAGGAATGCTTTCTTGGAATTAATAGTACCGACTCATTTAATCTATATTTTACACCTCAAGGGTCATCTTTTGCTTTTGTAAACGCCATTGAAGTCTTCCTTGCACCTTCAAATTTCACCCCTGAGAATCACAACACTAATCTTCCTTTACACACAACTTACCGAGTAAATGTTGGAGGCCCAGTGCTCTCACCAGATGATGACACAATATGGAGACACTGGGAAACCGATGATATTTATCTGTCTGATCCAAACTCTGCGAAGGATGTCCCTTACAAAAATACCAAGCTTAATCACGAAATTAATGATCAAGATGATGATTTTGTTGCATCTACTAATTATATTGCCCCGGATTTGGTTTACCAGACAGCTAAAGAGATGAATATTACTACTAGCAGGCCAGCCAATTCCTCCAACATAACATGGTCTTTTAGTGTGAGCAGGAATGCTAGGCACATTGTCCGTGCACACTTCTGTAACATTGTTTCTGATTCCGCTTATACTATAGTGTTTGACTTGTATTCGAATGGCAACTTCCGTAAGACGATCGGTGGACTGGAGTCCCGTTTTGCTCTTGTGGTATATAGTCCTTTCTACTATGATTTTGTGGTGAATGCTAGTGAGTCTAAACTCATTAACGTCAGTATAGCCCCTAACGAGAATTCAACAGAAGAAAATAAAGCCTTTCTGAATGGGCTGGAAATATTGGAGATACTGGAGGGAACAGCTCTAATTTATAATTTGAAAGAGTCCAAGAAGGTAAGTGTGGCTCTTGTGGTTGGTTCAGTTCTTGGAGGAGGCTTGTTTCTTTTCATCATTGGATTCATGTTGTGTTTGAGACACAGAAAGGCGAAAAAGAGAAACAGAGGAGGGATTTCCCGCAACCTTGGGTTGAAGATATCTTTTGCTCAAATCCGGTCTGCAACAAACAACTTTGATCCGAAAATGCAGATAGGTGTGGGTGGTTTTGGGTATGTTTATAAAGGAACTCTCTCTAATGGCACCAAAGTGGCTGTGAAGCGTTGTAAGCAAGAGGGGCAAAGGTCAGGCCAAGGCCTTCCAGAATTTAAAACAGAAATCATAGTGTTGTCCAAAATCCGCCACCGCCATCTTGTCTCCTTAATTGGTTACTGTGATGAAGGGTCTGAGATGATACTAGTGTATGAGTTCATGGAAAAAGGAACCTTGAGAGATCATTTGTATGAATCGGATGTGCCTCGCTTGTCGTGGAAGCAAAGGCTTGAAATTTGCATAGGTTCAGCAACTGGACTTGATTATCTCCATAAAGGTGCAGCAGGGGGCATCATCCACCGTGATGTGAAGTCCACCAACATATTGCTTGATGAGAACCTTGTTGCTAAAGTCGCTGACTTTGGGATTTCAAGGTCTGGCCCTCTTGATGAAACTCATGTCAGCACGGTTGTGAAAGGCACTATCGGTTACCTTGATCCCGAGTACATGATGTCACAGCAATTGACAGAGAAGTCTGATGTGTACTCATTTGGTGTAGTTCTTCTTGAGGTGTTATGTGGAAGACCTGCTATTGATATAAAGCTTCCAAGAGAGAAAGTGAACTTAGCTGAATGGGCTGTGCTGTGCAAGAAAGAAGGGTTGCTAGAAGAGGTCATTGATGTTTCATTGAAGGGTCATATTGATCCTAGCTCACTGAGACATTTTATCGAGACTGCAGAGAAGTGTTTGCAACACGATTCTTGTGATAGGCCTACTATGGCTGAGGTGCTGTGGGATTTGGACTATACATTGAAGCTTCATCAAACTATGAGGCTTGGAGAAGCCCATGAGGACAGCACTACCAGTGCTTCGTCAGCTTTTGTACTACCAAATATTCGGCATTTTGCTTCACTTGGTTCGACAGTTAACACAGCTGATATGAGGGACGATGAGATGGAGTCCACAGAAAGCAAAATTTTCTCCCAACTGAGAATCGGCGAGGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

808

Amino Acids

90.36

Weight (kDa)

6.03

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 40 - 131 1.1e-06 Malectin domain
Malectin_like PF12819 42 - 392 5e-28 Malectin-like domain
Pkinase PF00069 470 - 736 1.5e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 471 - 737 1.6e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1203, 1446
AasI GACNNNNNNGTC 1 cut(s) 1948
Acc36I ACCTGC 1 cut(s) 2011
AccB1I GGYRCC 2 cut(s) 230, 1466
AciI CCGC 4 cut(s) 960, 1345, 1564, 1570
AclWI GGATC 5 cut(s) 142, 707, 1397, 1907, 2114
AcsI RAATTY 6 cut(s) 166, 577, 1126, 1529, 1710, 2391
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 7 cut(s) 319, 330, 445, 493, 1922, 1961, 2301
AfiI CCNNNNNNNGG 1 cut(s) 820
AgeI ACCGGT 1 cut(s) 314
AhlI ACTAGT 1 cut(s) 1621
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AleI CACNNNNGTG 2 cut(s) 1472, 1886
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
Alw21I GWGCWC 2 cut(s) 654, 934
Alw26I GTCTC 7 cut(s) 212, 257, 673, 1297, 1585, 2128, 2141
Alw44I GTGCAC 1 cut(s) 930
AlwI GGATC 5 cut(s) 142, 707, 1397, 1907, 2114
AlwNI CAGNNNCTG 1 cut(s) 1730
Ama87I CYCGRG 1 cut(s) 1916
AoxI GGCC 8 cut(s) 357, 643, 863, 1513, 1519, 1855, 2186, 2418
ApaLI GTGCAC 1 cut(s) 930
ApeKI GCWGC 1 cut(s) 1757
ApoI RAATTY 6 cut(s) 166, 577, 1126, 1529, 1710, 2391
AseI ATTAAT 3 cut(s) 438, 486, 768
AsiGI ACCGGT 1 cut(s) 314
Asp700I GAANNNNTTC 2 cut(s) 422, 474
AspS9I GGNCC 3 cut(s) 151, 644, 1856
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 574, 648, 1087
AsuII TTCGAA 2 cut(s) 300, 989
AvaI CYCGRG 1 cut(s) 1916
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 934
BaeI ACNNNNGTAYC 2 cut(s) 1610, 1643
BanI GGYRCC 2 cut(s) 230, 1466
BbsI GAAGAC 2 cut(s) 553, 2005
Bbv12I GWGCWC 2 cut(s) 654, 934
BbvCI CCTCAGC 1 cut(s) 2199
BbvI GCAGC 1 cut(s) 1769
BccI CCATC 2 cut(s) 1581, 2365
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 7 cut(s) 212, 257, 673, 1297, 1585, 2128, 2141
BcuI ACTAGT 1 cut(s) 1621
BfaI CTAG 7 cut(s) 447, 858, 915, 1083, 1622, 2081, 2124
BfmI CTRYAG 2 cut(s) 969, 2151
BfuAI ACCTGC 1 cut(s) 2011
BisI GCNGC 1 cut(s) 1758
BlsI GCNGC 1 cut(s) 1759
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 1916
BmgT120I GGNCC 3 cut(s) 151, 644, 1856
BmiI GGNNCC 3 cut(s) 232, 1468, 1648
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 2 cut(s) 641, 694
BmsI GCATC 3 cut(s) 130, 803, 1776
BmuI ACTGGG 2 cut(s) 641, 694
BoxI GACNNNNGTC 1 cut(s) 1024
BpiI GAAGAC 2 cut(s) 553, 2005
BpmI CTGGAG 2 cut(s) 1043, 1202
Bpu10I CCTNAGC 1 cut(s) 2199
Bpu14I TTCGAA 2 cut(s) 300, 989
BpuEI CTTGAG 4 cut(s) 346, 507, 1672, 2003
BpuMI CCSGG 1 cut(s) 815
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 813, 1351, 1516
BsaWI WCCGGW 2 cut(s) 314, 1380
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse118I RCCGGY 2 cut(s) 314, 377
Bse1I ACTGG 6 cut(s) 647, 689, 1026, 1185, 1735, 2280
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 3 cut(s) 813, 1351, 1516
BseGI GGATG 4 cut(s) 74, 736, 1681, 1770
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 6 cut(s) 62, 579, 1602, 2123, 2190, 2396
BseNI ACTGG 6 cut(s) 647, 689, 1026, 1185, 1735, 2280
BseRI GAGGAG 2 cut(s) 1275, 1347
BseSI GKGCMC 1 cut(s) 934
BseXI GCAGC 1 cut(s) 1769
BsgI GTGCAG 2 cut(s) 320, 1776
Bsh1285I CGRYCG 1 cut(s) 1014
BshFI GGCC 8 cut(s) 359, 645, 865, 1515, 1521, 1857, 2188, 2420
BshNI GGYRCC 2 cut(s) 230, 1466
BshTI ACCGGT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 1014
BsiHKAI GWGCWC 2 cut(s) 654, 934
BsiHKCI CYCGRG 1 cut(s) 1916
BsiSI CCGG 4 cut(s) 315, 378, 815, 1381
BslFI GGGAC 3 cut(s) 719, 1012, 2375
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 7 cut(s) 212, 257, 673, 1297, 1585, 2128, 2141
BsmFI GGGAC 3 cut(s) 719, 1012, 2375
BsmI GAATGC 3 cut(s) 476, 916, 1084
BsnI GGCC 8 cut(s) 359, 645, 865, 1515, 1521, 1857, 2188, 2420
BsoBI CYCGRG 1 cut(s) 1916
Bsp119I TTCGAA 2 cut(s) 300, 989
Bsp1286I GDGCHC 2 cut(s) 654, 934
Bsp143I GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
BspACI CCGC 4 cut(s) 960, 1345, 1564, 1570
BspANI GGCC 8 cut(s) 359, 645, 865, 1515, 1521, 1857, 2188, 2420
BspCNI CTCAG 6 cut(s) 61, 580, 1603, 2124, 2191, 2397
BspLI GGNNCC 3 cut(s) 232, 1468, 1648
BspMAI CTGCAG 1 cut(s) 2155
BspMI ACCTGC 1 cut(s) 2011
BspPI GGATC 5 cut(s) 142, 707, 1397, 1907, 2114
BspT104I TTCGAA 2 cut(s) 300, 989
BspT107I GGYRCC 2 cut(s) 230, 1466
BsrFI RCCGGY 2 cut(s) 314, 377
BsrI ACTGG 6 cut(s) 647, 689, 1026, 1185, 1735, 2280
BssAI RCCGGY 2 cut(s) 314, 377
BssECI CCNNGG 3 cut(s) 813, 1351, 1516
BssMI GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
BssT1I CCWWGG 2 cut(s) 1351, 1516
Bst4CI ACNGT 4 cut(s) 1598, 1778, 1885, 2341
Bst6I CTCTTC 1 cut(s) 2079
BstBI TTCGAA 2 cut(s) 300, 989
BstC8I GCNNGC 3 cut(s) 335, 863, 867
BstDEI CTNAG 7 cut(s) 48, 588, 1611, 2041, 2132, 2199, 2405
BstEII GGTNACC 1 cut(s) 1904
BstF5I GGATG 4 cut(s) 74, 736, 1681, 1770
BstKTI GATC 8 cut(s) 137, 715, 775, 1014, 1405, 1660, 1915, 2122
BstMAI GTCTC 7 cut(s) 212, 257, 673, 1297, 1585, 2128, 2141
BstMBI GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
BstMCI CGRYCG 1 cut(s) 1014
BstMWI GCNNNNNNNGC 5 cut(s) 1492, 1501, 1829, 2051, 2291
BstPAI GACNNNNGTC 1 cut(s) 1024
BstPI GGTNACC 1 cut(s) 1904
BstSCI CCNGG 1 cut(s) 813
BstSFI CTRYAG 2 cut(s) 969, 2151
BstSLI GKGCMC 1 cut(s) 934
BstV1I GCAGC 1 cut(s) 1769
BstV2I GAAGAC 2 cut(s) 553, 2005
BsuRI GGCC 8 cut(s) 359, 645, 865, 1515, 1521, 1857, 2188, 2420
BtsCI GGATG 4 cut(s) 74, 736, 1681, 1770
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 6 cut(s) 306, 426, 654, 682, 2129, 2287
BveI ACCTGC 1 cut(s) 2011
Cac8I GCNNGC 3 cut(s) 335, 863, 867
CaiI CAGNNNCTG 1 cut(s) 1730
Cfr10I RCCGGY 2 cut(s) 314, 377
Cfr13I GGNCC 3 cut(s) 151, 644, 1856
Csp6I GTAC 7 cut(s) 318, 329, 444, 492, 1921, 1960, 2300
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 6 cut(s) 888, 1291, 1636, 1874, 1924, 2264
CviQI GTAC 7 cut(s) 318, 329, 444, 492, 1921, 1960, 2300
DdeI CTNAG 7 cut(s) 48, 588, 1611, 2041, 2132, 2199, 2405
DpnI GATC 8 cut(s) 136, 714, 774, 1013, 1404, 1659, 1914, 2121
DpnII GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
DraI TTTAAA 1 cut(s) 1534
DrdI GACNNNNNNGTC 1 cut(s) 1948
DseDI GACNNNNNNGTC 1 cut(s) 1948
Eam1104I CTCTTC 1 cut(s) 2079
EarI CTCTTC 1 cut(s) 2079
EciI GGCGGA 1 cut(s) 1553
Eco130I CCWWGG 2 cut(s) 1351, 1516
Eco147I AGGCCT 2 cut(s) 1521, 2188
Eco32I GATATC 1 cut(s) 1365
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 1916
Eco91I GGTNACC 1 cut(s) 1904
EcoO65I GGTNACC 1 cut(s) 1904
EcoRI GAATTC 1 cut(s) 1126
EcoRV GATATC 1 cut(s) 1365
EcoT14I CCWWGG 2 cut(s) 1351, 1516
ErhI CCWWGG 2 cut(s) 1351, 1516
FaeI CATG 6 cut(s) 891, 1294, 1639, 1877, 1927, 2267
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 549, 581
FaqI GGGAC 3 cut(s) 719, 1012, 2375
FatI CATG 6 cut(s) 887, 1290, 1635, 1873, 1923, 2263
FauI CCCGC 1 cut(s) 1352
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 1 cut(s) 1758
FokI GGATG 4 cut(s) 61, 743, 1688, 1757
Fsp4HI GCNGC 1 cut(s) 1758
FspBI CTAG 7 cut(s) 447, 858, 915, 1083, 1622, 2081, 2124
GluI GCNGC 1 cut(s) 1758
GsuI CTGGAG 2 cut(s) 1043, 1202
HaeIII GGCC 8 cut(s) 359, 645, 865, 1515, 1521, 1857, 2188, 2420
HapII CCGG 4 cut(s) 315, 378, 815, 1381
Hin1II CATG 6 cut(s) 891, 1294, 1639, 1877, 1927, 2267
HincII GTYRAC 1 cut(s) 2344
HindII GTYRAC 1 cut(s) 2344
HindIII AAGCTT 3 cut(s) 752, 2018, 2231
HpaI GTTAAC 1 cut(s) 2344
HpaII CCGG 4 cut(s) 315, 378, 815, 1381
HphI GGTGA 3 cut(s) 574, 648, 1087
Hpy188III TCNNGA 7 cut(s) 761, 776, 1526, 1862, 1916, 1982, 2146
HpyCH4III ACNGT 4 cut(s) 1598, 1778, 1885, 2341
HpyCH4IV ACGT 1 cut(s) 1104
HpyF10VI GCNNNNNNNGC 5 cut(s) 1492, 1501, 1829, 2051, 2291
HpyF3I CTNAG 7 cut(s) 48, 588, 1611, 2041, 2132, 2199, 2405
HpySE526I ACGT 1 cut(s) 1104
Hsp92II CATG 6 cut(s) 891, 1294, 1639, 1877, 1927, 2267
Ksp22I TGATCA 1 cut(s) 772
KspAI GTTAAC 1 cut(s) 2344
Kzo9I GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
Lsp1109I GCAGC 1 cut(s) 1769
LweI GCATC 3 cut(s) 130, 803, 1776
MaeI CTAG 7 cut(s) 447, 858, 915, 1083, 1622, 2081, 2124
MaeII ACGT 1 cut(s) 1104
MaeIII GTNAC 4 cut(s) 941, 1592, 1904, 1929
MalI GATC 8 cut(s) 136, 714, 774, 1013, 1404, 1659, 1914, 2121
MboI GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
MboII GAAGA 9 cut(s) 50, 345, 553, 599, 1148, 1372, 1970, 2010, 2096
MfeI CAATTG 2 cut(s) 127, 1937
MhlI GDGCHC 2 cut(s) 654, 934
MlyI GAGTC 5 cut(s) 491, 1034, 1097, 1223, 2384
MmeI TCCRAC 3 cut(s) 143, 619, 903
MroXI GAANNNNTTC 2 cut(s) 422, 474
MslI CAYNNNNRTG 5 cut(s) 1472, 1665, 1752, 1779, 1886
MspA1I CMGCKG 1 cut(s) 2351
MspI CCGG 4 cut(s) 315, 378, 815, 1381
MspR9I CCNGG 1 cut(s) 815
MunI CAATTG 2 cut(s) 127, 1937
Mva1269I GAATGC 3 cut(s) 476, 916, 1084
MwoI GCNNNNNNNGC 5 cut(s) 1492, 1501, 1829, 2051, 2291
NciI CCSGG 1 cut(s) 815
NdeII GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
NlaIII CATG 6 cut(s) 891, 1294, 1639, 1877, 1927, 2267
NlaIV GGNNCC 3 cut(s) 232, 1468, 1648
NmuCI GTSAC 1 cut(s) 1929
NspV TTCGAA 2 cut(s) 300, 989
OliI CACNNNNGTG 2 cut(s) 1472, 1886
PceI AGGCCT 2 cut(s) 1521, 2188
PctI GAATGC 3 cut(s) 476, 916, 1084
PdmI GAANNNNTTC 2 cut(s) 422, 474
PfeI GAWTC 8 cut(s) 191, 398, 592, 956, 1287, 1670, 2174, 2409
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 1 cut(s) 1759
Ple19I CGATCG 1 cut(s) 1014
PleI GAGTC 5 cut(s) 491, 1033, 1096, 1222, 2383
PpsI GAGTC 5 cut(s) 491, 1033, 1096, 1222, 2383
PshAI GACNNNNGTC 1 cut(s) 1024
PshBI ATTAAT 3 cut(s) 438, 486, 768
PsiI TTATAA 2 cut(s) 1203, 1446
PspEI GGTNACC 1 cut(s) 1904
PspN4I GGNNCC 3 cut(s) 232, 1468, 1648
PspPI GGNCC 3 cut(s) 151, 644, 1856
PstI CTGCAG 1 cut(s) 2155
PstNI CAGNNNCTG 1 cut(s) 1730
PvuI CGATCG 1 cut(s) 1014
PvuII CAGCTG 1 cut(s) 2351
RsaI GTAC 7 cut(s) 319, 330, 445, 493, 1922, 1961, 2301
RsaNI GTAC 7 cut(s) 318, 329, 444, 492, 1921, 1960, 2300
RseI CAYNNNNRTG 5 cut(s) 1472, 1665, 1752, 1779, 1886
SatI GCNGC 1 cut(s) 1758
Sau3AI GATC 8 cut(s) 134, 712, 772, 1011, 1402, 1657, 1912, 2119
Sau96I GGNCC 3 cut(s) 151, 644, 1856
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 5 cut(s) 491, 1034, 1097, 1223, 2384
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 654, 934
SfaNI GCATC 3 cut(s) 130, 803, 1776
SfcI CTRYAG 2 cut(s) 969, 2151
SfuI TTCGAA 2 cut(s) 300, 989
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 5 cut(s) 1472, 1665, 1752, 1779, 1886
SmlI CTYRAG 4 cut(s) 361, 522, 1651, 1982
SmoI CTYRAG 4 cut(s) 361, 522, 1651, 1982
SpeI ACTAGT 1 cut(s) 1621
SseBI AGGCCT 2 cut(s) 1521, 2188
SsiI CCGC 4 cut(s) 960, 1345, 1564, 1570
SspI AATATT 3 cut(s) 850, 1170, 2311
SspMI CTAG 7 cut(s) 447, 858, 915, 1083, 1622, 2081, 2124
StuI AGGCCT 2 cut(s) 1521, 2188
StyD4I CCNGG 1 cut(s) 813
StyI CCWWGG 2 cut(s) 1351, 1516
TaaI ACNGT 4 cut(s) 1598, 1778, 1885, 2341
TaiI ACGT 1 cut(s) 1107
TaqI TCGA 4 cut(s) 300, 989, 2145, 2336
TatI WGTACW 4 cut(s) 443, 1920, 1959, 2299
TfiI GAWTC 8 cut(s) 191, 398, 592, 956, 1287, 1670, 2174, 2409
TscAI CASTG 6 cut(s) 313, 433, 654, 689, 2136, 2287
TseFI GTSAC 1 cut(s) 1929
TseI GCWGC 1 cut(s) 1757
Tsp45I GTSAC 1 cut(s) 1929
TspGWI ACGGA 2 cut(s) 917, 992
TspRI CASTG 6 cut(s) 313, 433, 654, 689, 2136, 2287
VneI GTGCAC 1 cut(s) 930
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 3 cut(s) 438, 486, 768
XapI RAATTY 6 cut(s) 166, 577, 1126, 1529, 1710, 2391
XmnI GAANNNNTTC 2 cut(s) 422, 474
XspI CTAG 7 cut(s) 447, 858, 915, 1083, 1622, 2081, 2124
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.