Rh2DG196300

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
18001202 .. 18042491
41290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG196300.1

Sequence Viewer

Length: 1398 bp
ATGATTGCAAATCTTTCAAATATCACTGCTAGCAAGCCAACTAATTCCTCCAACATAACTTGGTCTTTTAGAGTGAGTGGGAATGCTAGACACATTGTCCGGGCTCACTTCTGTGACATTATTGGTTCAGCGATTGCTTATGAACTCCAAGAAAAGTATTTCGTCAATTGTGGATCAGATGCTACTGTGGACCTCAATGGTCGGAATTTCATTGGGGATTTGAAGCCTGATTCCTTCTCTTTCTCAAAGGAAAGTGAGACTATCAAAGGCACCAACCTTACGATATCAAGTCTCTACCAGACAGCAAGAGTTTTCAGTCAACAATCCTACTACAAGTTCAAAATCACTGAAACCGGTACTTATCTGGTACGCCTGCACTTCTTTCCCTTTTCTTTGGCCTCAAGTAATCTTTCTACTGGCATTTTTGATGTTTCGGATTCCAAGTTCACTCTGTTGAACAATTTCACTGCCAAGATTAATAGTACTAGCAACTCTGCTGTAATAAAGGAATTCTTTCTTGGAATTAATAGTACCAACTCATTTAAACTATATTTTACACCTCAAGCATCATCTTTTGCTTTTGTAAACGCCATTGAAGTCTTCCTTGCACCTTCAAATTTCACCCCTGAAAATCACAATAATAATCTTCCTTTACACACAACTTACCGAGTAAATGTTGGAGGCCCAGTGCTCTCACCAGATAATGACACAATATGGAGAAACTGGGAAACAGATGATATTTATCTTTCTGATCCAAACTCTGCGAAGGATGTCCATAACCAAAATACCCCACTTACTTGTGATAATAAGGATCAAGCTGATGAGTTTGTTGCATCTAATAATTTTATTGCCCCGGATTTGGTTTACAAGACAGCTAAAGAGATGAATAGTACTAGTAGCAGGCCAGCCAATTCCTCCAACATAACATGGTCATTTAGTGTGAGCAGGAATGCTACGTACATTATCCTTGTACACTTCTGTGACATTGTTTCTAGTTCCCCTCATACTATAGTCTTTGACTTGTATTCGAATGGCAACTTCCGTAAGCAGATCGTTGGATTGGATTCCCCTTTTGCTAAAGCGTTGGCTACTCCTTTCTACTATGATTTTGTGGTGAATGCTACTGAGCCTAAACTCATTAACATCAGTATAGCCCCTAACTTGGCGAATACAACAATAGAAAATGCCTTTCTGAATGGACTGGAAATATTGGCGATATTGGAGGGAACAGCTCTAATTTATAATTTGGAAGAGTCCAAGAAGATAACTAATGGCTTGACAGATGACCGAAGAGACTCTGGTCCTTCTGCGGATATTCTCTTGCACACTGCATCACAGTTGCTAATAACCTCCGTCAACCTTCCTTTAAGTTCCCCAATCTCTACCTGCAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

51.31

Weight (kDa)

5.5

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 53 - 154 1.6e-07 Malectin domain
Malectin_like PF12819 55 - 404 4.7e-28 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1242
Acc36I ACCTGC 1 cut(s) 1394
AccB1I GGYRCC 1 cut(s) 269
AciI CCGC 1 cut(s) 1310
AclWI GGATC 3 cut(s) 181, 746, 819
AcsI RAATTY 3 cut(s) 205, 509, 616
AfaI GTAC 7 cut(s) 358, 369, 484, 532, 892, 959, 972
AfiI CCNNNNNNNGG 2 cut(s) 859, 1162
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 6 cut(s) 18, 223, 340, 457, 596, 615
AhdI GACNNNNNGTC 1 cut(s) 95
AhlI ACTAGT 1 cut(s) 893
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AleI CACNNNNGTG 2 cut(s) 111, 978
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 818, 875, 1232
AluI AGCT 3 cut(s) 818, 875, 1232
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 3 cut(s) 251, 296, 1287
AlwI GGATC 3 cut(s) 181, 746, 819
AoxI GGCC 3 cut(s) 396, 682, 902
ApoI RAATTY 3 cut(s) 205, 509, 616
AseI ATTAAT 2 cut(s) 477, 525
AsiGI ACCGGT 1 cut(s) 353
Asp700I GAANNNNTTC 2 cut(s) 461, 513
AspS9I GGNCC 3 cut(s) 190, 683, 1301
AsuC2I CCSGG 2 cut(s) 101, 854
AsuHPI GGTGA 3 cut(s) 613, 687, 1126
AsuII TTCGAA 1 cut(s) 1028
AsuNHI GCTAGC 1 cut(s) 29
AvaII GGWCC 2 cut(s) 190, 1301
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 693
BcnI CCSGG 2 cut(s) 101, 854
BcoDI GTCTC 3 cut(s) 251, 296, 1287
BcuI ACTAGT 1 cut(s) 893
BfaI CTAG 5 cut(s) 30, 87, 486, 894, 993
BfmI CTRYAG 2 cut(s) 1008, 1387
BfuAI ACCTGC 1 cut(s) 1394
BmcAI AGTACT 2 cut(s) 484, 892
Bme1390I CCNGG 2 cut(s) 101, 854
Bme18I GGWCC 2 cut(s) 190, 1301
BmeRI GACNNNNNGTC 1 cut(s) 95
BmgT120I GGNCC 3 cut(s) 190, 683, 1301
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 101, 854
BmrI ACTGGG 2 cut(s) 680, 733
BmsI GCATC 4 cut(s) 169, 575, 842, 1340
BmtI GCTAGC 1 cut(s) 33
BmuI ACTGGG 2 cut(s) 680, 733
BoxI GACNNNNGTC 1 cut(s) 1299
BpiI GAAGAC 1 cut(s) 592
Bpu14I TTCGAA 1 cut(s) 1028
BpuEI CTTGAG 2 cut(s) 385, 546
BpuMI CCSGG 2 cut(s) 101, 854
BsaAI YACGTR 1 cut(s) 957
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 852
BsaWI WCCGGW 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 2 cut(s) 859, 1162
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 4 cut(s) 421, 686, 728, 1206
Bse8I GATNNNNATC 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 852
BseGI GGATG 1 cut(s) 775
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 2 cut(s) 859, 1162
BseMII CTCAG 1 cut(s) 1116
BseNI ACTGG 4 cut(s) 421, 686, 728, 1206
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 3 cut(s) 398, 684, 904
BshNI GGYRCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 3 cut(s) 100, 354, 854
BslI CCNNNNNNNGG 2 cut(s) 859, 1162
BsmAI GTCTC 3 cut(s) 251, 296, 1287
BsmI GAATGC 3 cut(s) 88, 955, 1123
BsnI GGCC 3 cut(s) 398, 684, 904
Bsp119I TTCGAA 1 cut(s) 1028
Bsp1286I GDGCHC 2 cut(s) 106, 693
Bsp1407I TGTACA 1 cut(s) 970
Bsp143I GATC 4 cut(s) 173, 751, 811, 1050
BspACI CCGC 1 cut(s) 1310
BspANI GGCC 3 cut(s) 398, 684, 904
BspCNI CTCAG 1 cut(s) 1117
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 1391
BspMI ACCTGC 1 cut(s) 1394
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 3 cut(s) 181, 746, 819
BspT104I TTCGAA 1 cut(s) 1028
BspT107I GGYRCC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 970
BsrI ACTGG 4 cut(s) 421, 686, 728, 1206
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 852
BssMI GATC 4 cut(s) 173, 751, 811, 1050
Bst4CI ACNGT 2 cut(s) 187, 1338
Bst6I CTCTTC 2 cut(s) 1245, 1285
BstAUI TGTACA 1 cut(s) 970
BstBAI YACGTR 1 cut(s) 957
BstBI TTCGAA 1 cut(s) 1028
BstC8I GCNNGC 5 cut(s) 31, 35, 374, 902, 906
BstDEI CTNAG 1 cut(s) 1125
BstF5I GGATG 1 cut(s) 775
BstKTI GATC 4 cut(s) 176, 754, 814, 1053
BstMAI GTCTC 3 cut(s) 251, 296, 1287
BstMBI GATC 4 cut(s) 173, 751, 811, 1050
BstPAI GACNNNNGTC 1 cut(s) 1299
BstSCI CCNGG 2 cut(s) 99, 852
BstSFI CTRYAG 2 cut(s) 1008, 1387
BstSNI TACGTA 1 cut(s) 957
BstV2I GAAGAC 1 cut(s) 592
BsuRI GGCC 3 cut(s) 398, 684, 904
BtsCI GGATG 1 cut(s) 775
BtsI GCAGTG 4 cut(s) 24, 465, 1326, 1396
BtsIMutI CAGTG 6 cut(s) 24, 345, 465, 693, 1326, 1396
BveI ACCTGC 1 cut(s) 1394
Cac8I GCNNGC 5 cut(s) 31, 35, 374, 902, 906
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 190, 683, 1301
Csp6I GTAC 7 cut(s) 357, 368, 483, 531, 891, 958, 971
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 2 cut(s) 927, 1395
CviQI GTAC 7 cut(s) 357, 368, 483, 531, 891, 958, 971
DdeI CTNAG 1 cut(s) 1125
DpnI GATC 4 cut(s) 175, 753, 813, 1052
DpnII GATC 4 cut(s) 173, 751, 811, 1050
DraI TTTAAA 1 cut(s) 544
DriI GACNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 1245, 1285
Eam1105I GACNNNNNGTC 1 cut(s) 95
EarI CTCTTC 2 cut(s) 1245, 1285
Eco105I TACGTA 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 190, 1301
EcoRI GAATTC 1 cut(s) 509
EcoRV GATATC 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 930, 1398
FalI AAGNNNNNCTT 4 cut(s) 497, 529, 588, 620
FatI CATG 2 cut(s) 926, 1394
FokI GGATG 1 cut(s) 782
FriOI GRGCYC 1 cut(s) 106
FspBI CTAG 5 cut(s) 30, 87, 486, 894, 993
HaeIII GGCC 3 cut(s) 398, 684, 904
HapII CCGG 3 cut(s) 100, 354, 854
Hin1II CATG 2 cut(s) 930, 1398
HincII GTYRAC 2 cut(s) 320, 1357
HindII GTYRAC 2 cut(s) 320, 1357
HinfI GANTC 5 cut(s) 230, 437, 1064, 1253, 1295
HpaII CCGG 3 cut(s) 100, 354, 854
HphI GGTGA 3 cut(s) 613, 687, 1126
Hpy166II GTNNAC 7 cut(s) 190, 320, 447, 586, 865, 973, 1357
Hpy188I TCNGA 5 cut(s) 178, 204, 436, 751, 1194
Hpy8I GTNNAC 7 cut(s) 190, 320, 447, 586, 865, 973, 1357
HpyAV CCTTC 5 cut(s) 244, 621, 760, 1314, 1370
HpyCH4III ACNGT 2 cut(s) 187, 1338
HpyCH4IV ACGT 1 cut(s) 956
HpyCH4V TGCA 8 cut(s) 8, 376, 608, 833, 1324, 1331, 1389, 1394
HpyF3I CTNAG 1 cut(s) 1125
HpySE526I ACGT 1 cut(s) 956
Hsp92II CATG 2 cut(s) 930, 1398
Kzo9I GATC 4 cut(s) 173, 751, 811, 1050
LweI GCATC 4 cut(s) 169, 575, 842, 1340
MaeI CTAG 5 cut(s) 30, 87, 486, 894, 993
MaeII ACGT 1 cut(s) 956
MaeIII GTNAC 2 cut(s) 113, 980
MalI GATC 4 cut(s) 175, 753, 813, 1052
MboI GATC 4 cut(s) 173, 751, 811, 1050
MboII GAAGA 5 cut(s) 592, 638, 1262, 1273, 1302
MfeI CAATTG 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 106, 693
MlyI GAGTC 2 cut(s) 1262, 1289
MmeI TCCRAC 5 cut(s) 75, 182, 658, 942, 1036
MnlI CCTC 9 cut(s) 58, 203, 409, 570, 674, 925, 1011, 1216, 1360
MroXI GAANNNNTTC 2 cut(s) 461, 513
MseI TTAA 5 cut(s) 477, 525, 543, 1140, 1367
MslI CAYNNNNRTG 2 cut(s) 111, 978
MspI CCGG 3 cut(s) 100, 354, 854
MspR9I CCNGG 2 cut(s) 101, 854
MunI CAATTG 1 cut(s) 166
Mva1269I GAATGC 3 cut(s) 88, 955, 1123
NciI CCSGG 2 cut(s) 101, 854
NdeII GATC 4 cut(s) 173, 751, 811, 1050
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 930, 1398
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 113, 980
NspV TTCGAA 1 cut(s) 1028
OliI CACNNNNGTG 2 cut(s) 111, 978
PctI GAATGC 3 cut(s) 88, 955, 1123
PdmI GAANNNNTTC 2 cut(s) 461, 513
PfeI GAWTC 3 cut(s) 230, 437, 1064
PinAI ACCGGT 1 cut(s) 353
PleI GAGTC 2 cut(s) 1261, 1289
PpsI GAGTC 2 cut(s) 1261, 1289
Ppu21I YACGTR 1 cut(s) 957
PshAI GACNNNNGTC 1 cut(s) 1299
PshBI ATTAAT 2 cut(s) 477, 525
PsiI TTATAA 1 cut(s) 1242
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 3 cut(s) 190, 683, 1301
PstI CTGCAG 1 cut(s) 1391
RsaI GTAC 7 cut(s) 358, 369, 484, 532, 892, 959, 972
RsaNI GTAC 7 cut(s) 357, 368, 483, 531, 891, 958, 971
RseI CAYNNNNRTG 2 cut(s) 111, 978
SaqAI TTAA 5 cut(s) 477, 525, 543, 1140, 1367
Sau3AI GATC 4 cut(s) 173, 751, 811, 1050
Sau96I GGNCC 3 cut(s) 190, 683, 1301
ScaI AGTACT 2 cut(s) 484, 892
SchI GAGTC 2 cut(s) 1262, 1289
ScrFI CCNGG 2 cut(s) 101, 854
SduI GDGCHC 2 cut(s) 106, 693
SfaNI GCATC 4 cut(s) 169, 575, 842, 1340
SfcI CTRYAG 2 cut(s) 1008, 1387
SfuI TTCGAA 1 cut(s) 1028
SinI GGWCC 2 cut(s) 190, 1301
SmiMI CAYNNNNRTG 2 cut(s) 111, 978
SmlI CTYRAG 2 cut(s) 400, 561
SmoI CTYRAG 2 cut(s) 400, 561
SnaBI TACGTA 1 cut(s) 957
SpeI ACTAGT 1 cut(s) 893
SsiI CCGC 1 cut(s) 1310
SspI AATATT 1 cut(s) 1209
SspMI CTAG 5 cut(s) 30, 87, 486, 894, 993
StyD4I CCNGG 2 cut(s) 99, 852
TaaI ACNGT 2 cut(s) 187, 1338
TaiI ACGT 1 cut(s) 959
TaqI TCGA 1 cut(s) 1028
TaqII GACCGA 1 cut(s) 1302
TatI WGTACW 3 cut(s) 482, 890, 970
TfiI GAWTC 3 cut(s) 230, 437, 1064
Tru1I TTAA 5 cut(s) 477, 525, 543, 1140, 1367
Tru9I TTAA 5 cut(s) 477, 525, 543, 1140, 1367
TscAI CASTG 6 cut(s) 31, 352, 472, 693, 1333, 1396
TseFI GTSAC 2 cut(s) 113, 980
Tsp45I GTSAC 2 cut(s) 113, 980
TspDTI ATGAA 3 cut(s) 156, 199, 899
TspGWI ACGGA 2 cut(s) 1031, 1342
TspRI CASTG 6 cut(s) 31, 352, 472, 693, 1333, 1396
VpaK11BI GGWCC 2 cut(s) 190, 1301
VspI ATTAAT 2 cut(s) 477, 525
XapI RAATTY 3 cut(s) 205, 509, 616
XmnI GAANNNNTTC 2 cut(s) 461, 513
XspI CTAG 5 cut(s) 30, 87, 486, 894, 993
ZrmI AGTACT 2 cut(s) 484, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.