Rmu_sc0000751.1_g000002

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000751.1
OG0000413
Physical Location & Seq
Forward (+)
1877 .. 2380
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000751.1_g000002.1.cds

Sequence Viewer

Length: 504 bp
atgatgtcacagcagttgacagagaagtctgatgtgtactcatttggtgtagttcttcttgaggtgttatgtggaagacctgctattgatataacgcttccaagagagaaagtgaacttagctgaatgggttgtgctgtgcaagaaagaagggttgctagaagaggtcattgacgtttcattgaaggatcatattgatcctagctcactgagacattttattgagactgcagagaagtgtttgcaacacgattcttctgataggcccactatggctgaggtgctgtgggatttggactatacattgaagcttcatcaaactgcgaggcttggagaagcccatgaggacagcactaccagtgcttcatcagcttttttactaccaaatattcggcattttgcttcacttgattcgacagttaacagagctgatatgagggacgatgagatggagtccacagaaagcgaaattttctcccaactgagaatcggcgaggccagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.91

Weight (kDa)

4.73

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 191, 195
AcsI RAATTY 1 cut(s) 468
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 184, 307
AluBI AGCT 5 cut(s) 122, 204, 310, 371, 428
AluI AGCT 5 cut(s) 122, 204, 310, 371, 428
Alw26I GTCTC 2 cut(s) 205, 218
AlwI GGATC 2 cut(s) 191, 195
AoxI GGCC 2 cut(s) 263, 495
ApoI RAATTY 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 82
BbvCI CCTCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 205, 218
BfaI CTAG 2 cut(s) 158, 201
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 357
BseMII CTCAG 3 cut(s) 200, 267, 473
BseNI ACTGG 1 cut(s) 357
BshFI GGCC 2 cut(s) 265, 497
BslFI GGGAC 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 205, 218
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 2 cut(s) 265, 497
Bsp143I GATC 2 cut(s) 187, 196
BspANI GGCC 2 cut(s) 265, 497
BspCNI CTCAG 3 cut(s) 201, 268, 474
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 191, 195
BsrI ACTGG 1 cut(s) 357
BssMI GATC 2 cut(s) 187, 196
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 4 cut(s) 118, 209, 276, 482
BstKTI GATC 2 cut(s) 190, 199
BstMAI GTCTC 2 cut(s) 205, 218
BstMBI GATC 2 cut(s) 187, 196
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 265, 497
BtsIMutI CAGTG 2 cut(s) 206, 364
BveI ACCTGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 341
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 4 cut(s) 118, 209, 276, 482
DpnI GATC 2 cut(s) 189, 198
DpnII GATC 2 cut(s) 187, 196
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 1 cut(s) 344
FaiI YATR 7 cut(s) 70, 92, 192, 272, 300, 342, 434
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 340
FspBI CTAG 2 cut(s) 158, 201
HaeIII GGCC 2 cut(s) 265, 497
Hin1II CATG 1 cut(s) 344
HincII GTYRAC 2 cut(s) 18, 421
HindII GTYRAC 2 cut(s) 18, 421
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 4 cut(s) 251, 410, 452, 486
HpaI GTTAAC 1 cut(s) 421
Hpy166II GTNNAC 5 cut(s) 18, 37, 115, 421, 456
Hpy188I TCNGA 2 cut(s) 31, 259
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 5 cut(s) 18, 37, 115, 421, 456
HpyAV CCTTC 2 cut(s) 143, 178
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 141, 230, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 4 cut(s) 118, 209, 276, 482
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 187, 196
LpnPI CCDG 2 cut(s) 93, 370
MaeI CTAG 2 cut(s) 158, 201
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 6
MalI GATC 2 cut(s) 189, 198
MboI GATC 2 cut(s) 187, 196
MboII GAAGA 4 cut(s) 47, 87, 173, 246
MluCI AATT 1 cut(s) 468
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 7 cut(s) 55, 157, 271, 318, 337, 429, 487
MseI TTAA 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 2 cut(s) 187, 196
NlaIII CATG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 251, 410, 486
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 2 cut(s) 187, 196
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 461
SfcI CTRYAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 468
SspI AATATT 1 cut(s) 388
SspMI CTAG 2 cut(s) 158, 201
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 413
TasI AATT 1 cut(s) 468
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 3 cut(s) 251, 410, 486
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 213, 364
TseFI GTSAC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 3 cut(s) 168, 302, 354
TspRI CASTG 2 cut(s) 213, 364
XapI RAATTY 1 cut(s) 468
XspI CTAG 2 cut(s) 158, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.