RchiOBHm_Chr1g0324401

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000413
Physical Location & Seq
Forward (+)
12083393 .. 12084448
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55424

Sequence Viewer

Length: 1056 bp
ATGGAACATCTTCGTATCCCGCTACTCTCTCTGTTTGTTTTTCTCCTCAACCTCTCACCCCTTCACTTTCTCTCTTTAGCTGATGATTATTTCATCAACTGTGGTTCACATGATGATGTGAGCCTCACTCCTGGCCAGAATTTCTCTGGGGAATCGAAGCCTGTAGGTTACTCTTTCTCCAAAAGCAAGGCTGTCAAAGACATCAACCAGTTGCCAGATATATCATCTCTATATAAGACAGCAAGAAGTTTCAATAAACCATTCTACTACCAGTTCAGCATCACTGAAGATGGTAATTATCTGGTACGCTTACATTTCTCAGCTTTCTCCTCCTCCTCCTCAAATAATCTCTCCACGGCTGTTTTTGGTGTTTTGGATTCTAAGAATTTCACACTGTTGAACAATTTCACCACCAAGAACACTACCTACTCCCCTGTGATAAAGGAATTCTTTCTCCGAATTGATATTACTGACTCATTTAGACTATATTTTACTCCTCAACCATCATCTTTTGCATTTGTAAATGCCATAGAATTATTCCCTGCCCCTGCAGATTTCATCGCTGAGAACTATACTAGTAATCTCCCTTTACACACAGTTTACAGACTCACCATTGGAGGTTCACCAGTAAATGACACAATATGGAGAAAGTGGGAAACAGATGATAGTCATATCTCTGATCAAAACTCTGCAAAGAAAGCCCCTCCTGAAAATGCACTCAATTTAAATTACCGCGGAGGAATTGAGGGTTTGCTTGCATCTAATGAGTCTGTAGCCCCACTTTCGGTTTACCAGACTGCTAGAGAGATGATGAATGGCAGTAGTAATATAACATGGTTTTTTAGTGTGAGTAGTAAAGCTAGACACATTGTTCGGGCTCACTTCTGTGACATTGTTGGTCAGCCTGGTAACAGTATATTTAACTTGTATGCAAATGCCAACTTCCGCAAGGAGGTCGGCAACATTTCTCAATCTTCAATTTTTCAATATTCGGCTGTTCCCTTCTACTATTCGGCTGTTCCCAAAACTAACTTCCTAAAAACTGACTCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

351

Amino Acids

39.35

Weight (kDa)

6.71

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 31 - 113 7.5e-08 Malectin domain
Malectin_like PF12819 32 - 318 8.5e-20 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 735
AciI CCGC 4 cut(s) 20, 733, 735, 946
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 139, 385, 446
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 784, 952
AgsI TTSAA 4 cut(s) 253, 400, 978, 986
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 2 cut(s) 130, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 1016, 1048
AleI CACNNNNGTG 1 cut(s) 885
AluBI AGCT 3 cut(s) 80, 323, 860
AluI AGCT 3 cut(s) 80, 323, 860
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 3 cut(s) 139, 385, 446
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
Asp700I GAANNNNTTC 3 cut(s) 9, 404, 450
AsuHPI GGTGA 4 cut(s) 48, 400, 601, 615
BalI TGGCCA 1 cut(s) 135
BanII GRGCYC 1 cut(s) 880
BccI CCATC 2 cut(s) 284, 511
BceAI ACGGC 1 cut(s) 372
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 2 cut(s) 132, 906
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 3 cut(s) 576, 801, 861
BfmI CTRYAG 3 cut(s) 162, 549, 771
BfuI GTATCC 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 132, 906
BmrFI CCNGG 2 cut(s) 132, 906
BmsI GCATC 2 cut(s) 288, 767
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BsaJI CCNNGG 2 cut(s) 354, 733
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 784, 952
Bse1I ACTGG 3 cut(s) 208, 271, 626
BseBI CCWGG 2 cut(s) 132, 906
BseDI CCNNGG 2 cut(s) 354, 733
BseLI CCNNNNNNNGG 2 cut(s) 784, 952
BseMII CTCAG 2 cut(s) 333, 555
BseNI ACTGG 3 cut(s) 208, 271, 626
BseRI GAGGAG 6 cut(s) 35, 319, 322, 325, 328, 486
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 784, 952
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 880
Bsp143I GATC 1 cut(s) 679
BspACI CCGC 4 cut(s) 20, 733, 735, 946
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 332, 556
BspFNI CGCG 1 cut(s) 735
BspMAI CTGCAG 1 cut(s) 553
BsrI ACTGG 3 cut(s) 208, 271, 626
BssECI CCNNGG 2 cut(s) 354, 733
BssMI GATC 1 cut(s) 679
Bst2UI CCWGG 2 cut(s) 132, 906
Bst4CI ACNGT 4 cut(s) 101, 396, 598, 914
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 3 cut(s) 319, 381, 564
BstDSI CCRYGG 2 cut(s) 354, 733
BstFNI CGCG 1 cut(s) 735
BstKTI GATC 1 cut(s) 682
BstMBI GATC 1 cut(s) 679
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 2 cut(s) 132, 906
BstSCI CCNGG 2 cut(s) 130, 904
BstSFI CTRYAG 3 cut(s) 162, 549, 771
BstUI CGCG 1 cut(s) 735
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 2 cut(s) 354, 733
BtgZI GCGATG 1 cut(s) 544
BtsIMutI CAGTG 2 cut(s) 282, 392
Cac8I GCNNGC 1 cut(s) 756
Cfr42I CCGCGG 1 cut(s) 736
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 110, 834
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 319, 381, 564
DpnI GATC 1 cut(s) 681
DpnII GATC 1 cut(s) 679
DraI TTTAAA 1 cut(s) 726
EaeI YGGCCR 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 130, 904
EcoT38I GRGCYC 1 cut(s) 880
FaeI CATG 2 cut(s) 113, 837
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FatI CATG 2 cut(s) 109, 833
FauI CCCGC 1 cut(s) 27
FbaI TGATCA 1 cut(s) 679
FriOI GRGCYC 1 cut(s) 880
FspBI CTAG 3 cut(s) 576, 801, 861
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 2 cut(s) 113, 837
HinfI GANTC 6 cut(s) 152, 377, 473, 606, 767, 1046
HphI GGTGA 4 cut(s) 48, 400, 601, 615
Hpy166II GTNNAC 4 cut(s) 107, 601, 623, 790
Hpy188I TCNGA 2 cut(s) 458, 679
Hpy188III TCNNGA 1 cut(s) 707
Hpy8I GTNNAC 4 cut(s) 107, 601, 623, 790
HpyAV CCTTC 2 cut(s) 71, 1012
HpyCH4III ACNGT 4 cut(s) 101, 396, 598, 914
HpyCH4V TGCA 6 cut(s) 515, 551, 692, 716, 758, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 3 cut(s) 319, 381, 564
Hsp92II CATG 2 cut(s) 113, 837
Ksp22I TGATCA 1 cut(s) 679
KspI CCGCGG 1 cut(s) 736
Kzo9I GATC 1 cut(s) 679
LweI GCATC 2 cut(s) 288, 767
MaeI CTAG 3 cut(s) 576, 801, 861
MaeIII GTNAC 3 cut(s) 167, 887, 908
MalI GATC 1 cut(s) 681
MboI GATC 1 cut(s) 679
MboII GAAGA 2 cut(s) 299, 966
MhlI GDGCHC 1 cut(s) 880
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 4 cut(s) 467, 600, 776, 1040
Mox20I TGGCCA 1 cut(s) 135
MroXI GAANNNNTTC 3 cut(s) 9, 404, 450
MscI TGGCCA 1 cut(s) 135
MseI TTAA 2 cut(s) 725, 921
MslI CAYNNNNRTG 2 cut(s) 114, 885
Msp20I TGGCCA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 735
MspR9I CCNGG 2 cut(s) 132, 906
MvaI CCWGG 2 cut(s) 132, 906
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 1 cut(s) 698
NdeII GATC 1 cut(s) 679
NlaIII CATG 2 cut(s) 113, 837
NmuCI GTSAC 1 cut(s) 887
OliI CACNNNNGTG 1 cut(s) 885
PdmI GAANNNNTTC 3 cut(s) 9, 404, 450
PfeI GAWTC 2 cut(s) 152, 377
PleI GAGTC 4 cut(s) 467, 600, 775, 1040
PpsI GAGTC 4 cut(s) 467, 600, 775, 1040
Psp6I CCWGG 2 cut(s) 130, 904
PspGI CCWGG 2 cut(s) 130, 904
PsrI GAACNNNNNNTAC 2 cut(s) 410, 442
PstI CTGCAG 1 cut(s) 553
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 2 cut(s) 114, 885
SacII CCGCGG 1 cut(s) 736
SaqAI TTAA 2 cut(s) 725, 921
Sau3AI GATC 1 cut(s) 679
SchI GAGTC 4 cut(s) 467, 600, 776, 1040
ScrFI CCNGG 2 cut(s) 132, 906
SduI GDGCHC 1 cut(s) 880
SetI ASST 8 cut(s) 54, 82, 169, 325, 428, 622, 862, 957
SfaNI GCATC 2 cut(s) 288, 767
SfcI CTRYAG 3 cut(s) 162, 549, 771
Sfr303I CCGCGG 1 cut(s) 736
SgrBI CCGCGG 1 cut(s) 736
SmiI ATTTAAAT 1 cut(s) 726
SmiMI CAYNNNNRTG 2 cut(s) 114, 885
SpeI ACTAGT 1 cut(s) 575
SsiI CCGC 4 cut(s) 20, 733, 735, 946
SspI AATATT 1 cut(s) 989
SspMI CTAG 3 cut(s) 576, 801, 861
StyD4I CCNGG 2 cut(s) 130, 904
SwaI ATTTAAAT 1 cut(s) 726
TaaI ACNGT 4 cut(s) 101, 396, 598, 914
TaqI TCGA 1 cut(s) 155
TfiI GAWTC 2 cut(s) 152, 377
Tru1I TTAA 2 cut(s) 725, 921
Tru9I TTAA 2 cut(s) 725, 921
TscAI CASTG 2 cut(s) 289, 399
TseFI GTSAC 1 cut(s) 887
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 3 cut(s) 82, 547, 827
TspRI CASTG 2 cut(s) 289, 399
XapI RAATTY 3 cut(s) 139, 385, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 3 cut(s) 9, 404, 450
XspI CTAG 3 cut(s) 576, 801, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.