pycom15g25310

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000413
Physical Location & Seq
Reverse (-)
19722369 .. 19723759
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g25310.2

Sequence Viewer

Length: 1332 bp
ATGGTCACTCAGATACAACTCCATAGCCTAAACACTTGCAAAATTCAGCAACTCCATCAAATTTTCATGGAAAATCTTCGTATCCGTAAAACCCCTCTCCCTCTATTTTCTGTGATTGTTTTTCTCCTCCATCTCTCATCCCTTCACTTTCCCTCGTTGGCTTATGAGCGCCCTGATAAGTACTTCATCAACTGTGGGTCAAATGCCAATGCCACCCTCAATAACCGTGTCTTCATTGCAGATCGATCCTTCCACGCGAAGGCGAGCAACGGTATCAATGGCGGCAACCAGTCGAATCTTAACCTTACAGCAAGAATTTTCAGGCAAGAATCCTACTATGAGTTCGACATCACTGAAAACAGTACTTATTTTGTACGTTTGCATTTCTTGGCTTTCGCCTCTTCCTCAAGTAATCTCTCCGCTGCTCTTTTTGATGTTTCGGCTTTTCCTAATATTTCGAATCCCGGATTCATGCTGTTGAAGAATTTCACTGCTAAGAATAGTAATAGCAATTCTACGATAAAGGAGTTCTTTCTGGGCATTGTTCCTGGCTCATTTAGGATATACTTTACGCCTCGTGGATCGTCTTTTGCATTTGTAAATGCCATTGAAGTCTTCCTTGCCCCTGCAAATTTCAGCCCTAAGAATTACACAAGTAGTTCTCCTTTAGTTCTACATACAATTTACAGGGTGAATGTTGGAGGTCAAGAACTCAGACCAGATGAGGACACACTATGGCGAAACTGGGATCCTGATGATCTTTATTTGTCAAATTCAAACTCTGCAAAGGAAGCCGCATCCTCAAAGAGGCCTGAGTACATGGAGTATGAAAAGGATGGTTTTGTTGCTGCTGCTAATGATTTTATTGCCCCAGATTTAGTTTACGAGAATGCCAAAGTAATGGACAATAGTAGTAGCACTAGCAACTCATCCAATTTGTTCAACATAACCTGGTCGTTTAATGTGCGCAGGAACGCTAAACATCTCGTCCGGGCACACTTTTGTGACGTTGTTGGCGGAACTGCTGCCGTCATTGTTTTTAACTTGTATTCAAATGGAAACTTCACTAAGAAGGTCGGTGGACCCAATTCCATTTTTGACAACCAGTTGCCTTACTACTATGATTTTGTGGTGGAGTCTAAGGAGTCTGAACTCATTAGCATCAGCATAGGTCCTAACGTAGAAGAAACTACCATTAACAATTCCTTTCTAAATGGACTGGAAATGTTGGAAATAATGGAGGAATCAGCACCAATTCCAAATATGAAAGAGTCCAAGAGCATAAATGTCGCTGTTGTGGTTGGTTCGGTTCTTGGAGGCAAAGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

444

Amino Acids

49.43

Weight (kDa)

6.16

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 968
AccII CGCG 1 cut(s) 257
AciI CCGC 4 cut(s) 282, 420, 795, 1017
AclWI GGATC 4 cut(s) 240, 589, 743, 756
AcsI RAATTY 6 cut(s) 42, 60, 315, 484, 631, 772
AfaI GTAC 4 cut(s) 182, 364, 375, 818
AfiI CCNNNNNNNGG 2 cut(s) 259, 807
AgsI TTSAA 5 cut(s) 481, 611, 777, 943, 1053
AjnI CCWGG 2 cut(s) 547, 950
AleI CACNNNNGTG 1 cut(s) 1002
AlwI GGATC 4 cut(s) 240, 589, 743, 756
AoxI GGCC 1 cut(s) 809
ApeKI GCWGC 4 cut(s) 422, 848, 851, 1025
ApoI RAATTY 6 cut(s) 42, 60, 315, 484, 631, 772
Asp700I GAANNNNTTC 2 cut(s) 75, 485
AspLEI GCGC 2 cut(s) 171, 969
AspS9I GGNCC 2 cut(s) 1082, 1172
AsuC2I CCSGG 2 cut(s) 465, 992
AsuHPI GGTGA 1 cut(s) 703
AsuII TTCGAA 1 cut(s) 458
AvaII GGWCC 2 cut(s) 1082, 1172
BaeGI GKGCMC 1 cut(s) 997
BamHI GGATCC 1 cut(s) 748
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 2 cut(s) 223, 607
BbvI GCAGC 4 cut(s) 409, 835, 838, 1012
BccI CCATC 3 cut(s) 63, 138, 830
BceAI ACGGC 1 cut(s) 1013
BcgI CGANNNNNNTGC 2 cut(s) 1270, 1304
BciT130I CCWGG 2 cut(s) 549, 952
BciVI GTATCC 1 cut(s) 92
BcnI CCSGG 2 cut(s) 465, 992
BfaI CTAG 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 172
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 6 cut(s) 283, 423, 795, 849, 852, 1026
BlsI GCNGC 6 cut(s) 284, 424, 796, 850, 853, 1027
BmcAI AGTACT 2 cut(s) 182, 364
Bme1390I CCNGG 4 cut(s) 465, 549, 952, 992
Bme18I GGWCC 2 cut(s) 1082, 1172
BmgT120I GGNCC 2 cut(s) 1082, 1172
BmiI GGNNCC 2 cut(s) 750, 1084
BmrFI CCNGG 4 cut(s) 465, 549, 952, 992
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 2 cut(s) 806, 1170
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 2 cut(s) 223, 607
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 391
BpuMI CCSGG 2 cut(s) 465, 992
Bsa29I ATCGAT 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 807
Bse1I ACTGG 4 cut(s) 289, 749, 1105, 1224
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 549, 952
BseCI ATCGAT 1 cut(s) 244
BseGI GGATG 4 cut(s) 137, 797, 841, 929
BseLI CCNNNNNNNGG 2 cut(s) 259, 807
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 23, 727, 804
BseNI ACTGG 4 cut(s) 289, 749, 1105, 1224
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 4 cut(s) 409, 835, 838, 1012
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 811
BshVI ATCGAT 1 cut(s) 244
BsiSI CCGG 2 cut(s) 465, 991
BslI CCNNNNNNNGG 2 cut(s) 259, 807
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 1 cut(s) 811
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 997
Bsp143I GATC 5 cut(s) 241, 245, 581, 748, 757
BspACI CCGC 4 cut(s) 282, 420, 795, 1017
BspANI GGCC 1 cut(s) 811
BspCNI CTCAG 3 cut(s) 22, 726, 805
BspDI ATCGAT 1 cut(s) 244
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 750, 1084
BspPI GGATC 4 cut(s) 240, 589, 743, 756
BspT104I TTCGAA 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 4 cut(s) 289, 749, 1105, 1224
BssMI GATC 5 cut(s) 241, 245, 581, 748, 757
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 549, 952
Bst4CI ACNGT 4 cut(s) 194, 227, 272, 362
Bst6I CTCTTC 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 7 cut(s) 9, 495, 642, 713, 813, 1068, 1140
BstENI CCTNNNNNAGG 1 cut(s) 805
BstF5I GGATG 4 cut(s) 137, 797, 841, 929
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 171, 969
BstKTI GATC 5 cut(s) 244, 248, 584, 751, 760
BstMBI GATC 5 cut(s) 241, 245, 581, 748, 757
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNI CCWGG 2 cut(s) 549, 952
BstNSI RCATGY 1 cut(s) 1329
BstSCI CCNGG 4 cut(s) 463, 547, 950, 990
BstSLI GKGCMC 1 cut(s) 997
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 4 cut(s) 409, 835, 838, 1012
BstV2I GAAGAC 2 cut(s) 223, 607
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 748
Bsu15I ATCGAT 1 cut(s) 244
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 1 cut(s) 811
BsuTUI ATCGAT 1 cut(s) 244
BtsCI GGATG 4 cut(s) 137, 797, 841, 929
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 351, 489
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 171, 969
Cfr13I GGNCC 2 cut(s) 1082, 1172
ClaI ATCGAT 1 cut(s) 244
CsiI ACCWGGT 1 cut(s) 950
Csp6I GTAC 4 cut(s) 181, 363, 374, 817
CviAII CATG 4 cut(s) 67, 472, 820, 1326
CviJI RGCY 8 cut(s) 27, 161, 392, 443, 552, 639, 794, 811
CviKI_1 RGCY 8 cut(s) 27, 161, 392, 443, 552, 639, 794, 811
CviQI GTAC 4 cut(s) 181, 363, 374, 817
DdeI CTNAG 7 cut(s) 9, 495, 642, 713, 813, 1068, 1140
DpnI GATC 5 cut(s) 243, 247, 583, 750, 759
DpnII GATC 5 cut(s) 241, 245, 581, 748, 757
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 1032
Eco147I AGGCCT 1 cut(s) 811
Eco47I GGWCC 2 cut(s) 1082, 1172
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRII CCWGG 2 cut(s) 547, 950
FaeI CATG 4 cut(s) 70, 475, 823, 1329
FalI AAGNNNNNCTT 4 cut(s) 515, 547, 603, 635
FatI CATG 4 cut(s) 66, 471, 819, 1325
Fnu4HI GCNGC 6 cut(s) 283, 423, 795, 849, 852, 1026
FokI GGATG 4 cut(s) 124, 784, 848, 916
Fsp4HI GCNGC 6 cut(s) 283, 423, 795, 849, 852, 1026
FspBI CTAG 1 cut(s) 921
FspI TGCGCA 1 cut(s) 968
GlaI GCGC 2 cut(s) 170, 968
GluI GCNGC 6 cut(s) 283, 423, 795, 849, 852, 1026
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 811
HapII CCGG 2 cut(s) 465, 991
HhaI GCGC 2 cut(s) 171, 969
Hin1II CATG 4 cut(s) 70, 475, 823, 1329
Hin6I GCGC 2 cut(s) 169, 967
HinP1I GCGC 2 cut(s) 169, 967
HinfI GANTC 8 cut(s) 295, 329, 460, 468, 1136, 1145, 1244, 1271
HpaII CCGG 2 cut(s) 465, 991
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 2 cut(s) 883, 1082
Hpy188I TCNGA 3 cut(s) 12, 716, 1150
Hpy188III TCNNGA 2 cut(s) 707, 752
Hpy8I GTNNAC 2 cut(s) 883, 1082
HpyAV CCTTC 4 cut(s) 152, 253, 259, 1066
HpyCH4III ACNGT 4 cut(s) 194, 227, 272, 362
HpyCH4IV ACGT 3 cut(s) 376, 1008, 1179
HpyCH4V TGCA 6 cut(s) 39, 239, 382, 593, 629, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 7 cut(s) 9, 495, 642, 713, 813, 1068, 1140
HpySE526I ACGT 3 cut(s) 376, 1008, 1179
Hsp92II CATG 4 cut(s) 70, 475, 823, 1329
HspAI GCGC 2 cut(s) 169, 967
Kzo9I GATC 5 cut(s) 241, 245, 581, 748, 757
Lsp1109I GCAGC 4 cut(s) 409, 835, 838, 1012
LweI GCATC 2 cut(s) 806, 1170
MabI ACCWGGT 1 cut(s) 950
MaeI CTAG 1 cut(s) 921
MaeII ACGT 3 cut(s) 376, 1008, 1179
MaeIII GTNAC 2 cut(s) 4, 1004
MalI GATC 5 cut(s) 243, 247, 583, 750, 759
MboI GATC 5 cut(s) 241, 245, 581, 748, 757
MboII GAAGA 6 cut(s) 68, 223, 393, 493, 607, 1196
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 997
MlyI GAGTC 3 cut(s) 1145, 1154, 1280
MmeI TCCRAC 2 cut(s) 679, 1209
MroXI GAANNNNTTC 2 cut(s) 75, 485
MseI TTAA 4 cut(s) 300, 960, 1041, 1197
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 465, 991
MspR9I CCNGG 4 cut(s) 465, 549, 952, 992
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 2 cut(s) 549, 952
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 791
NciI CCSGG 2 cut(s) 465, 992
NdeII GATC 5 cut(s) 241, 245, 581, 748, 757
NlaIII CATG 4 cut(s) 70, 475, 823, 1329
NlaIV GGNNCC 2 cut(s) 750, 1084
NmuCI GTSAC 2 cut(s) 4, 1004
NsbI TGCGCA 1 cut(s) 968
NspI RCATGY 1 cut(s) 1329
NspV TTCGAA 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 1002
PceI AGGCCT 1 cut(s) 811
PctI GAATGC 1 cut(s) 895
PdmI GAANNNNTTC 2 cut(s) 75, 485
PfeI GAWTC 5 cut(s) 295, 329, 460, 468, 1244
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 6 cut(s) 284, 424, 796, 850, 853, 1027
PleI GAGTC 3 cut(s) 1144, 1153, 1279
PpsI GAGTC 3 cut(s) 1144, 1153, 1279
PpuMI RGGWCCY 1 cut(s) 1172
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 2 cut(s) 547, 950
PspGI CCWGG 2 cut(s) 547, 950
PspN4I GGNNCC 2 cut(s) 750, 1084
PspPI GGNCC 2 cut(s) 1082, 1172
PspPPI RGGWCCY 1 cut(s) 1172
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 4 cut(s) 182, 364, 375, 818
RsaNI GTAC 4 cut(s) 181, 363, 374, 817
RseI CAYNNNNRTG 1 cut(s) 1002
SaqAI TTAA 4 cut(s) 300, 960, 1041, 1197
SatI GCNGC 6 cut(s) 283, 423, 795, 849, 852, 1026
Sau3AI GATC 5 cut(s) 241, 245, 581, 748, 757
Sau96I GGNCC 2 cut(s) 1082, 1172
ScaI AGTACT 2 cut(s) 182, 364
SchI GAGTC 3 cut(s) 1145, 1154, 1280
ScrFI CCNGG 4 cut(s) 465, 549, 952, 992
SduI GDGCHC 1 cut(s) 997
SetI ASST 8 cut(s) 306, 379, 706, 953, 1011, 1077, 1174, 1182
SexAI ACCWGGT 1 cut(s) 950
SfaNI GCATC 2 cut(s) 806, 1170
SfuI TTCGAA 1 cut(s) 458
SinI GGWCC 2 cut(s) 1082, 1172
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SseBI AGGCCT 1 cut(s) 811
SsiI CCGC 4 cut(s) 282, 420, 795, 1017
SspI AATATT 1 cut(s) 454
SspMI CTAG 1 cut(s) 921
StuI AGGCCT 1 cut(s) 811
StyD4I CCNGG 4 cut(s) 463, 547, 950, 990
TaaI ACNGT 4 cut(s) 194, 227, 272, 362
TaiI ACGT 3 cut(s) 379, 1011, 1182
TaqI TCGA 4 cut(s) 244, 293, 345, 458
TatI WGTACW 3 cut(s) 180, 362, 816
TauI GCSGC 2 cut(s) 285, 797
TfiI GAWTC 5 cut(s) 295, 329, 460, 468, 1244
Tru1I TTAA 4 cut(s) 300, 960, 1041, 1197
Tru9I TTAA 4 cut(s) 300, 960, 1041, 1197
TscAI CASTG 2 cut(s) 358, 496
TseFI GTSAC 2 cut(s) 4, 1004
TseI GCWGC 4 cut(s) 422, 848, 851, 1025
Tsp45I GTSAC 2 cut(s) 4, 1004
TspDTI ATGAA 6 cut(s) 55, 175, 223, 460, 843, 1280
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 2 cut(s) 358, 496
VpaK11BI GGWCC 2 cut(s) 1082, 1172
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 6 cut(s) 42, 60, 315, 484, 631, 772
XceI RCATGY 1 cut(s) 1329
XmnI GAANNNNTTC 2 cut(s) 75, 485
XspI CTAG 1 cut(s) 921
ZrmI AGTACT 2 cut(s) 182, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.