RLG00000030200

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
57453028 .. 57453453
426 bp
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UTR
Exon/CDS
Intron
RLM00000030200

Sequence Viewer

Length: 426 bp
ATGTTATGTGGAAGACCTGCTATTGATCCAACGCTTCCAAGAGAGCAAATAAACTTGGCTGAATGGGGAATGCTTTGCAAGAAAAAAGGGTTGCTTGAACAGATTGTTGATTCTTCATTGAAAAATCAGATTGATCCTAGCTCACTAAGAACTTTTGGTGAGACAGCTGAGAAGTGTTTGCAAGATGATGCTTCTGATAGGCCAACAATGGCCGATGTGCTGTGGGATTTGGAATATGCATTACAGCTTCAGAAAACAACAAAGCTTAAAGAGGCTCCTGAGGACAGCACCACCATTGATGCTTCATCAGCAGCATTCGGTTTGCCAATTGTTCAGCGATTTCCTTCACTTGGTTCGACAACAAATGGAGATGATATGAGGGACAGCGACTTGGACACAACAGAAAACAAAATTTCTCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.53

Weight (kDa)

4.44

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23200
fragaria_vesca FvH4_1g16860 FvH4_1g16861
malus_domestica MD02G1018900.v1.1 MD15G1289500.v1.1 MD15G1289600.v1.1 MD15G1289700.v1.1
prunus_persica Prupe.6G227800_v2.0.a1 Prupe.6G228000_v2.0.a1 Prupe.6G228100_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228200_v2.0.a1 Prupe.6G228300_v2.0.a1
pyrus_communis pycom02g01680 pycom02g01690 pycom15g25310 pycom15g25330 pycom15g25340
rosa_chinensis RchiOBHm_Chr1g0324321 RchiOBHm_Chr1g0324331 RchiOBHm_Chr1g0324341 RchiOBHm_Chr1g0324401 RchiOBHm_Chr1g0324441 RchiOBHm_Chr2g0106751 RchiOBHm_Chr2g0106761 RchiOBHm_Chr2g0106771 RchiOBHm_Chr2g0106781 RchiOBHm_Chr2g0106801 RchiOBHm_Chr2g0106811 RchiOBHm_Chr2g0106821
rosa_laevigata RLG00000017539 RLG00000017540 RLG00000017541 RLG00000030200 RLG00000030201
rosa_multiflora Rmu_sc0000751.1_g000001 Rmu_sc0000751.1_g000002 Rmu_sc0000751.1_g000003 Rmu_sc0000751.1_g000005 Rmu_sc0000751.1_g000007 Rmu_sc0000751.1_g000008 Rmu_sc0000751.1_g000018 Rmu_sc0000751.1_g000019 Rmu_sc0000751.1_g000026 Rmu_sc0000751.1_g000027 Rmu_sc0000751.1_g000028 Rmu_sc0000751.1_g000029 Rmu_sc0003410.1_g000012 Rmu_sc0004000.1_g000023 Rmu_sc0004000.1_g000024 Rmu_sc0004082.1_g000015 Rmu_sc0004082.1_g000017 Rmu_sc0026507.1_g000001 Rmu_sc0031196.1_g000001 Rmu_sc0039591.1_g000001
rosa_roxburghii Rroxscaffold_159G00432710 Rroxscaffold_159G00432780 Rroxscaffold_159G00432840 Rroxscaffold_159G00433010 Rroxscaffold_2G00098070 Rroxscaffold_2G00136770 Rroxscaffold_4G00325540 Rroxscaffold_4G00325630 Rroxscaffold_4G00325680
rosa_rugosa Rorug01G0045700 Rorug02G0138500 Rorug02G0138600 Rorug02G0138700 Rorug02G0138800 Rorug02G0138900
rosa_samantha Rh1AG061400 Rh1BG052300 Rh1CG063400 Rh1CG063700 Rh1DG067800 Rh2AG189400 Rh2AG189800 Rh2AG190000 Rh2AG190100 Rh2BG201100 Rh2BG201300 Rh2CG194500 Rh2CG194600 Rh2CG194700 Rh2DG195700 Rh2DG195900 Rh2DG196300 Rh2DG196400 Rh2DG196500 Rh2DG196600
rosa_wichuraiana Rw1G004230 Rw1G005210 Rw2G014900 Rw2G014910 Rw2G014930 Rw2G014940 Rw2G014950 Rw2G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 20, 128
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 98, 121
AluBI AGCT 4 cut(s) 141, 167, 247, 265
AluI AGCT 4 cut(s) 141, 167, 247, 265
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 20, 128
AoxI GGCC 2 cut(s) 200, 210
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 2 cut(s) 178, 289
BpiI GAAGAC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse21I CCTNAGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 159, 270
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 202, 212
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 2 cut(s) 75, 314
BsnI GGCC 2 cut(s) 202, 212
Bsp143I GATC 2 cut(s) 25, 133
BspANI GGCC 2 cut(s) 202, 212
BspCNI CTCAG 2 cut(s) 160, 271
BspLI GGNNCC 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 2 cut(s) 20, 128
BssMI GATC 2 cut(s) 25, 133
BstDEI CTNAG 3 cut(s) 146, 168, 279
BstKTI GATC 2 cut(s) 28, 136
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 25, 133
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 2 cut(s) 202, 212
BveI ACCTGC 1 cut(s) 25
CviJI RGCY 8 cut(s) 59, 141, 167, 202, 212, 247, 265, 275
CviKI_1 RGCY 8 cut(s) 59, 141, 167, 202, 212, 247, 265, 275
DdeI CTNAG 3 cut(s) 146, 168, 279
DpnI GATC 2 cut(s) 27, 135
DpnII GATC 2 cut(s) 25, 133
EaeI YGGCCR 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 241
FaiI YATR 3 cut(s) 7, 237, 377
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 202, 212
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 3 cut(s) 129, 196, 252
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 354
HpyCH4V TGCA 3 cut(s) 78, 181, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 146, 168, 279
Kzo9I GATC 2 cut(s) 25, 133
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 2 cut(s) 30, 291
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 2 cut(s) 178, 289
MaeI CTAG 1 cut(s) 138
MalI GATC 2 cut(s) 27, 135
MboI GATC 2 cut(s) 25, 133
MboII GAAGA 2 cut(s) 24, 105
MfeI CAATTG 1 cut(s) 327
MluCI AATT 3 cut(s) 327, 411, 421
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 3 cut(s) 265, 274, 372
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 167
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 75, 314
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 2 cut(s) 25, 133
NlaIV GGNNCC 1 cut(s) 276
NsiI ATGCAT 1 cut(s) 241
PctI GAATGC 2 cut(s) 75, 314
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 25, 133
SetI ASST 5 cut(s) 19, 143, 169, 249, 267
SfaNI GCATC 2 cut(s) 178, 289
Sse9I AATT 3 cut(s) 327, 411, 421
SspMI CTAG 1 cut(s) 138
TaqI TCGA 1 cut(s) 356
TasI AATT 3 cut(s) 327, 411, 421
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 105, 294
XapI RAATTY 1 cut(s) 411
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.