pycom06g10070

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000675
Physical Location & Seq
Reverse (-)
15420861 .. 15422174
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
ATGGCTACCATCGATACCTTCACATTCTTCTTATTCCTCTTCTTCCGTCCTCAAATCACCACCGCCTCGTGTGGTGAACCGAAATGCGCCCCTGAAGGCCCGTCAGTTCGATTCCCTTTCAGCAGGCTAAGTTACAACAACCATTTCTCAAAAAATTGTGGGTATCCAGGGTTTGGTCTCTCATGCAACGACCAACGTCAAACTATTCTCACTCTCCCATTTTCTGAGGACTTCATCGTCCAAAACATCAACTACTTGGATCAAGTTGTAACGATCAACGACCCCGATAACTGCCTCCCTAGACGGTTTTTCCACCGTGACCTCAGTCTTGTAATCGATACACCCTTTGTATACACATATGGCCCTCTAAACTACACGTTCCTCACATGCTCCATCTATAACGAAACCTGGTCTGCACCCTTGATCTCTTGCCTCAGCAGCCAGAAGAACTATGTCATTGTTGTGCCAACGAGTTTTTCATTGCCTCCTGATCAGGAACCCTACCATCGATTTTGCACTGTGATTTCCACAACTTCAGTTCCAAGATCATTTGATTGGCAACATCTTGAACTTGGCGCTCAGTTGACTTGGCATACGCCTGATTGCCGTTTTTGTGAATCAAGTGGTCATCTTTGTGGCTCAAAGAATGGCACAGGTTCCGCAGTTCAGTGCTTTGATTCTTCAAAACCCGGTCTATCAAGGGCTGCAATTTATTGCAGAATGATAAGCGTGGGAATGTCCGTATTGTTAATTGTGGGAATTGCAATTCATGTTCGGGACAAAAAGAGGGCTAGCAATGAGCCCCGCCAACCCAATATGGAATTGTCCATCATAACCGATCAACAACCTTCGGTACTCACAATGGGTCTCGATCGTCCGACCATCGAATTGTATCCCAAGATTCAACTTGGTAAGAGGTCGGAATTTCCAAAACAGCTCACTGACAACACTTGCCCAATATGTTTGGGTGAGTACCGGCCAAAGGAAACCGTGAGGACTATACCACAATGCAACCATTATTTCCATGCTAATTGCATAGATGAATGGCTTAGAAGGAATGCAACATGCCCACTTTGTCGACTTCCGCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

365

Amino Acids

41.33

Weight (kDa)

8.04

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 24 - 94 1.1e-15 Wall-associated receptor kinase galacturonan-binding
zf-rbx1 PF12678 313 - 360 3.2e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 316 - 360 1.3e-14 Ring finger domain
zf-RING_11 PF17123 318 - 346 4e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 318 - 359 2.1e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 318 - 359 1.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 318 - 357 1.5e-06 RING-type zinc-finger
zf-RING_5 PF14634 318 - 360 1.5e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 2 cut(s) 351, 1078
AciI CCGC 4 cut(s) 63, 660, 805, 1085
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 977
AcsI RAATTY 1 cut(s) 923
AcuI CTGAAG 2 cut(s) 114, 519
AfaI GTAC 2 cut(s) 855, 974
AfiI CCNNNNNNNGG 2 cut(s) 173, 982
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 569, 684, 905
AjnI CCWGG 2 cut(s) 166, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 1 cut(s) 937
AluI AGCT 1 cut(s) 937
Alw26I GTCTC 2 cut(s) 182, 872
AlwI GGATC 1 cut(s) 267
AoxI GGCC 3 cut(s) 97, 361, 977
ApeKI GCWGC 2 cut(s) 438, 704
ApoI RAATTY 1 cut(s) 923
AspLEI GCGC 2 cut(s) 89, 578
AspS9I GGNCC 2 cut(s) 98, 362
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 3 cut(s) 49, 86, 980
AsuNHI GCTAGC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 804
BauI CACGAG 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 450, 691
BccI CCATC 5 cut(s) 17, 401, 513, 836, 890
BceAI ACGGC 1 cut(s) 591
BciT130I CCWGG 2 cut(s) 168, 409
BciVI GTATCC 2 cut(s) 174, 903
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 182, 872
BfaI CTAG 2 cut(s) 300, 792
BfoI RGCGCY 1 cut(s) 579
BfuI GTATCC 2 cut(s) 174, 903
BisI GCNGC 2 cut(s) 439, 705
BlsI GCNGC 2 cut(s) 440, 706
Bme1390I CCNGG 3 cut(s) 168, 409, 690
BmgT120I GGNCC 2 cut(s) 98, 362
BmiI GGNNCC 2 cut(s) 498, 658
BmrFI CCNGG 3 cut(s) 168, 409, 690
BmtI GCTAGC 1 cut(s) 795
BoxI GACNNNNGTC 2 cut(s) 195, 324
Bpu10I CCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 690
Bsa29I ATCGAT 3 cut(s) 12, 336, 508
BsaI GGTCTC 2 cut(s) 182, 872
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 982
Bse118I RCCGGY 1 cut(s) 975
Bse3DI GCAATG 2 cut(s) 479, 802
BseBI CCWGG 2 cut(s) 168, 409
BseCI ATCGAT 3 cut(s) 12, 336, 508
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 173, 982
BseMI GCAATG 2 cut(s) 479, 802
BseMII CTCAG 4 cut(s) 216, 337, 448, 593
BseXI GCAGC 2 cut(s) 450, 691
BsgI GTGCAG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 874
BshFI GGCC 3 cut(s) 99, 363, 979
BshVI ATCGAT 3 cut(s) 12, 336, 508
BsiEI CGRYCG 1 cut(s) 874
BsiSI CCGG 2 cut(s) 690, 976
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 2 cut(s) 173, 982
BsmAI GTCTC 2 cut(s) 182, 872
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 3 cut(s) 99, 363, 979
Bso31I GGTCTC 2 cut(s) 182, 872
Bsp1286I GDGCHC 1 cut(s) 804
Bsp143I GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
BspACI CCGC 4 cut(s) 63, 660, 805, 1085
BspANI GGCC 3 cut(s) 99, 363, 979
BspCNI CTCAG 4 cut(s) 217, 336, 447, 592
BspDI ATCGAT 3 cut(s) 12, 336, 508
BspLI GGNNCC 2 cut(s) 498, 658
BspOI GCTAGC 1 cut(s) 795
BspPI GGATC 1 cut(s) 267
BspTNI GGTCTC 2 cut(s) 182, 872
BsrDI GCAATG 2 cut(s) 479, 802
BsrFI RCCGGY 1 cut(s) 975
BssAI RCCGGY 1 cut(s) 975
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
BssNAI GTATAC 1 cut(s) 352
BssSI CACGAG 1 cut(s) 67
Bst1107I GTATAC 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 168, 409
Bst4CI ACNGT 4 cut(s) 306, 317, 520, 991
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 125, 793
BstDEI CTNAG 6 cut(s) 128, 225, 323, 434, 579, 1049
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 2 cut(s) 89, 578
BstKTI GATC 7 cut(s) 262, 276, 426, 493, 548, 841, 874
BstMAI GTCTC 2 cut(s) 182, 872
BstMBI GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
BstMCI CGRYCG 1 cut(s) 874
BstMWI GCNNNNNNNGC 1 cut(s) 438
BstNI CCWGG 2 cut(s) 168, 409
BstNSI RCATGY 2 cut(s) 390, 1068
BstPAI GACNNNNGTC 2 cut(s) 195, 324
BstSCI CCNGG 3 cut(s) 166, 407, 688
BstV1I GCAGC 2 cut(s) 450, 691
BstZ17I GTATAC 1 cut(s) 352
Bsu15I ATCGAT 3 cut(s) 12, 336, 508
BsuI GTATCC 2 cut(s) 174, 903
BsuRI GGCC 3 cut(s) 99, 363, 979
BsuTUI ATCGAT 3 cut(s) 12, 336, 508
BtsIMutI CAGTG 3 cut(s) 516, 674, 939
Cac8I GCNNGC 2 cut(s) 125, 793
CfoI GCGC 2 cut(s) 89, 578
Cfr10I RCCGGY 1 cut(s) 975
Cfr13I GGNCC 2 cut(s) 98, 362
ClaI ATCGAT 3 cut(s) 12, 336, 508
CsiI ACCWGGT 1 cut(s) 407
Csp6I GTAC 2 cut(s) 854, 973
CviAII CATG 5 cut(s) 183, 387, 770, 1025, 1065
CviQI GTAC 2 cut(s) 854, 973
DdeI CTNAG 6 cut(s) 128, 225, 323, 434, 579, 1049
DpnI GATC 7 cut(s) 261, 275, 425, 492, 547, 840, 873
DpnII GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 977
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 1074
Eco24I GRGCYC 1 cut(s) 804
Eco31I GGTCTC 2 cut(s) 182, 872
Eco57I CTGAAG 2 cut(s) 114, 519
EcoRII CCWGG 2 cut(s) 166, 407
EcoT38I GRGCYC 1 cut(s) 804
FaeI CATG 5 cut(s) 186, 390, 773, 1028, 1068
FaqI GGGAC 1 cut(s) 791
FatI CATG 5 cut(s) 182, 386, 769, 1024, 1064
FauI CCCGC 1 cut(s) 812
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 2 cut(s) 351, 1078
Fnu4HI GCNGC 2 cut(s) 439, 705
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 2 cut(s) 439, 705
FspBI CTAG 2 cut(s) 300, 792
GlaI GCGC 2 cut(s) 88, 577
GluI GCNGC 2 cut(s) 439, 705
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 3 cut(s) 99, 363, 979
HapII CCGG 2 cut(s) 690, 976
HhaI GCGC 2 cut(s) 89, 578
Hin1II CATG 5 cut(s) 186, 390, 773, 1028, 1068
Hin6I GCGC 2 cut(s) 87, 576
HinP1I GCGC 2 cut(s) 87, 576
HincII GTYRAC 2 cut(s) 585, 1079
HindII GTYRAC 2 cut(s) 585, 1079
HinfI GANTC 4 cut(s) 111, 617, 677, 901
HpaII CCGG 2 cut(s) 690, 976
HphI GGTGA 3 cut(s) 49, 86, 980
Hpy166II GTNNAC 4 cut(s) 77, 352, 585, 1079
Hpy188I TCNGA 3 cut(s) 226, 879, 922
Hpy188III TCNNGA 5 cut(s) 488, 494, 566, 776, 869
Hpy8I GTNNAC 4 cut(s) 77, 352, 585, 1079
HpyAV CCTTC 4 cut(s) 28, 89, 858, 1047
HpyCH4III ACNGT 4 cut(s) 306, 317, 520, 991
HpyCH4IV ACGT 2 cut(s) 196, 377
HpyCH4V TGCA 9 cut(s) 186, 416, 516, 707, 717, 764, 1011, 1035, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 438
HpyF3I CTNAG 6 cut(s) 128, 225, 323, 434, 579, 1049
HpySE526I ACGT 2 cut(s) 196, 377
Hsp92II CATG 5 cut(s) 186, 390, 773, 1028, 1068
HspAI GCGC 2 cut(s) 87, 576
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 2 cut(s) 450, 691
MabI ACCWGGT 1 cut(s) 407
MaeI CTAG 2 cut(s) 300, 792
MaeII ACGT 2 cut(s) 196, 377
MaeIII GTNAC 3 cut(s) 131, 268, 317
MalI GATC 7 cut(s) 261, 275, 425, 492, 547, 840, 873
MboI GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
MboII GAAGA 5 cut(s) 19, 31, 34, 457, 672
MhlI GDGCHC 1 cut(s) 804
MluCI AATT 9 cut(s) 154, 708, 750, 759, 765, 821, 887, 923, 1030
MmeI TCCRAC 2 cut(s) 900, 902
MseI TTAA 1 cut(s) 749
MslI CAYNNNNRTG 2 cut(s) 461, 633
MspI CCGG 2 cut(s) 690, 976
MspR9I CCNGG 3 cut(s) 168, 409, 690
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 2 cut(s) 168, 409
MwoI GCNNNNNNNGC 1 cut(s) 438
NciI CCSGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 358
NdeII GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
NheI GCTAGC 1 cut(s) 791
NlaIII CATG 5 cut(s) 186, 390, 773, 1028, 1068
NlaIV GGNNCC 2 cut(s) 498, 658
NmuCI GTSAC 1 cut(s) 317
NspI RCATGY 2 cut(s) 390, 1068
PctI GAATGC 1 cut(s) 1063
PfeI GAWTC 4 cut(s) 111, 617, 677, 901
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 2 cut(s) 440, 706
Ple19I CGATCG 1 cut(s) 874
PshAI GACNNNNGTC 2 cut(s) 195, 324
Psp6I CCWGG 2 cut(s) 166, 407
PspGI CCWGG 2 cut(s) 166, 407
PspN4I GGNNCC 2 cut(s) 498, 658
PspPI GGNCC 2 cut(s) 98, 362
PvuI CGATCG 1 cut(s) 874
RsaI GTAC 2 cut(s) 855, 974
RsaNI GTAC 2 cut(s) 854, 973
RseI CAYNNNNRTG 2 cut(s) 461, 633
SalI GTCGAC 1 cut(s) 1077
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 2 cut(s) 439, 705
Sau3AI GATC 7 cut(s) 259, 273, 423, 490, 545, 838, 871
Sau96I GGNCC 2 cut(s) 98, 362
ScrFI CCNGG 3 cut(s) 168, 409, 690
SduI GDGCHC 1 cut(s) 804
SetI ASST 9 cut(s) 20, 199, 324, 380, 410, 658, 850, 920, 939
SexAI ACCWGGT 1 cut(s) 407
SmiMI CAYNNNNRTG 2 cut(s) 461, 633
Sse9I AATT 9 cut(s) 154, 708, 750, 759, 765, 821, 887, 923, 1030
SsiI CCGC 4 cut(s) 63, 660, 805, 1085
SspMI CTAG 2 cut(s) 300, 792
StyD4I CCNGG 3 cut(s) 166, 407, 688
TaaI ACNGT 4 cut(s) 306, 317, 520, 991
TaiI ACGT 2 cut(s) 199, 380
TaqI TCGA 7 cut(s) 12, 109, 336, 508, 870, 885, 1078
TasI AATT 9 cut(s) 154, 708, 750, 759, 765, 821, 887, 923, 1030
TfiI GAWTC 4 cut(s) 111, 617, 677, 901
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TscAI CASTG 3 cut(s) 523, 674, 946
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 438, 704
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 223, 468, 758, 1056
TspGWI ACGGA 2 cut(s) 35, 730
TspRI CASTG 3 cut(s) 523, 674, 946
Van91I CCANNNNNTGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 923
XceI RCATGY 2 cut(s) 390, 1068
XmiI GTMKAC 2 cut(s) 351, 1078
XspI CTAG 2 cut(s) 300, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.