Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

18655033 .. 18655378

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGTGGTTCAGGCTATTGGGATTTCTGTGAAGGGGGTTCAGCTCCATGGTTCGCTTGTGAAGATGGGTTTGGAGGAAGCTGTGTTTATTGGGAATTTTTTGATTCATTTCTACGCAGAATGTGGGCACTTGGATTATGCCCAGAAGGTGTTTGATGAAATGCTTGGGAGAAACACTTGTCGTGGACTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

64

Amino Acids

7.05

Weight (kDa)

6.24

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	94
AhlI	ACTAGT	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	2 cut(s)	43, 80
AluI	AGCT	2 cut(s)	43, 80
ApoI	RAATTY	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	129
BccI	CCATC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	46
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	3 cut(s)	14, 43, 80
CviKI_1	RGCY	3 cut(s)	14, 43, 80
Eco130I	CCWWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 138
FatI	CATG	1 cut(s)	46
FspBI	CTAG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	25, 139
Hsp92II	CATG	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	1 cut(s)	155
MaeI	CTAG	1 cut(s)	188
MboII	GAAGA	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	46
NlaIII	CATG	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	3 cut(s)	45, 82, 150
SgeI	CNNG	7 cut(s)	23, 59, 68, 142, 154, 176, 189
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	46
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	95, 171
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.