Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

34043875 .. 34047941

Gene Structure 4067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACGAAGAACCCCATCGCAACTGATTCTCTCCCGAAAGGATTTCATAAGAGAAGGACCTTCCCCAAATGGGTCTCTCAGATGCGCTCCAGAAATGGTTTCAGCTCAAATCCTCAAATAGCAGTTCATGGTTGTATACTAGAATTACTGAACAAGAAACTTGAAAACCAGAAATGGATATCACAAAGAGGCACTGTGTTGAGCTCCTTCACAACTAAAGCTGCTTCTTTGGAAGCTGGTGCTGCTGCAGTATCAAATGAGATAGCTGAGAGTGATGTGCTGAAATCATTGTCTCAAATCATTGATCCAGACTTCGGGACAGACATCGTCTCGTGTGGATTTGTGAAAGACTACAAATCAATGAGGCTTTGGGAGAGGTCATTTAGAGCATGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

9.62

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	70, 314
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	5 cut(s)	105, 204, 221, 236, 266
AluI	AGCT	5 cut(s)	105, 204, 221, 236, 266
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	3 cut(s)	79, 297, 334
AlwI	GGATC	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	221, 242, 245
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	208, 229, 232
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	3 cut(s)	79, 297, 334
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	3 cut(s)	222, 243, 246
BlsI	GCNGC	3 cut(s)	223, 244, 247
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 314
BseLI	CCNNNNNNNGG	2 cut(s)	70, 314
BseMII	CTCAG	2 cut(s)	92, 258
BseXI	GCAGC	3 cut(s)	208, 229, 232
BsiHKAI	GWGCWC	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	70, 314
BsmAI	GTCTC	3 cut(s)	79, 297, 334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	91, 259
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	79
BssMI	GATC	1 cut(s)	304
BssNAI	GTATAC	1 cut(s)	137
BssSI	CACGAG	1 cut(s)	331
Bst1107I	GTATAC	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	78, 267
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	3 cut(s)	79, 297, 334
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	208, 229, 232
BstZ17I	GTATAC	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	192
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	2 cut(s)	128, 390
CviJI	RGCY	6 cut(s)	105, 204, 221, 236, 266, 367
CviKI_1	RGCY	6 cut(s)	105, 204, 221, 236, 266, 367
DdeI	CTNAG	2 cut(s)	78, 267
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	2 cut(s)	131, 393
FaiI	YATR	5 cut(s)	48, 129, 137, 391, 395
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	127, 389
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	222, 243, 246
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	222, 243, 246
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	3 cut(s)	222, 243, 246
GsuI	CTGGAG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	131, 393
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	4 cut(s)	34, 90, 308, 316
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	48, 70, 217
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	78, 267
Hsp92II	CATG	2 cut(s)	131, 393
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	92, 209
LpnPI	CCDG	4 cut(s)	103, 182, 222, 321
Lsp1109I	GCAGC	3 cut(s)	208, 229, 232
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	140
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	1 cut(s)	143
MnlI	CCTC	4 cut(s)	123, 182, 357, 369
MslI	CAYNNNNRTG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	2 cut(s)	131, 393
NspI	RCATGY	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	223, 244, 247
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	57
PspPPI	RGGWCCY	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	206
SatI	GCNGC	3 cut(s)	222, 243, 246
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	7 cut(s)	62, 107, 206, 223, 238, 268, 380
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	394
Sse9I	AATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	3 cut(s)	221, 242, 245
TspDTI	ATGAA	2 cut(s)	35, 116
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.