RchiOBHm_Chr2g0159881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001045
Physical Location & Seq
Forward (+)
75933822 .. 75937876
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52841

Sequence Viewer

Length: 264 bp
ATGGAAGAGAATGTTCCCCCTCACCATCTCCGGTACCTGCCTCTCAAGGCCATCACCGCCAATAATCCAAGTGTCGTCATCTTCTTCATCGATCTGAGGGCTTGTCCAACAACCGCTACTATGGCGTCAACGAGTACATCGCCATGTTCCAGCCCCATGACCGAATCATGGGCTCCCCTCCGTTGGTCACTTGACCTATGGTTACTACACCTCCGGCGAGAAGAAGATCTCAGCCAACTCTCTCTCTCTCTTCCCCTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.82

Weight (kDa)

5.81

Isoelectric Point (pI)

80.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 2 cut(s) 57, 114
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 2 cut(s) 35, 136
AfiI CCNNNNNNNGG 2 cut(s) 168, 183
AoxI GGCC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 14, 46
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 175
BccI CCATC 2 cut(s) 33, 59
BfaI CTAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 35, 174
BpuEI CTTGAG 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 183
BseCI ATCGAT 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 168, 183
BseMII CTCAG 2 cut(s) 86, 244
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 90
BsiSI CCGG 2 cut(s) 31, 214
BslI CCNNNNNNNGG 2 cut(s) 168, 183
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 91, 226
BspACI CCGC 2 cut(s) 57, 114
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 87, 243
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 35, 174
BspMI ACCTGC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 33
BssMI GATC 2 cut(s) 91, 226
BssNI GRCGYC 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 95, 230
BstKTI GATC 2 cut(s) 94, 229
BstMBI GATC 2 cut(s) 91, 226
BstMWI GCNNNNNNNGC 2 cut(s) 56, 122
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 34, 135
CviAII CATG 3 cut(s) 144, 157, 168
CviJI RGCY 5 cut(s) 50, 101, 153, 173, 234
CviKI_1 RGCY 5 cut(s) 50, 101, 153, 173, 234
CviQI GTAC 2 cut(s) 34, 135
DdeI CTNAG 2 cut(s) 95, 230
DpnI GATC 2 cut(s) 93, 228
DpnII GATC 2 cut(s) 91, 226
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 147, 160, 171
FaiI YATR 5 cut(s) 122, 145, 158, 169, 199
FatI CATG 3 cut(s) 143, 156, 167
FriOI GRGCYC 1 cut(s) 175
FspBI CTAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 31, 214
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 3 cut(s) 147, 160, 171
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 31, 214
HphI GGTGA 2 cut(s) 14, 46
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 96, 263
Hpy8I GTNNAC 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 122
HpyF3I CTNAG 2 cut(s) 95, 230
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 147, 160, 171
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 91, 226
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 44, 50, 163, 227
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 186, 201
MalI GATC 2 cut(s) 93, 228
MboI GATC 2 cut(s) 91, 226
MboII GAAGA 6 cut(s) 17, 73, 76, 233, 236, 242
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 5 cut(s) 30, 51, 90, 188, 221
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 2 cut(s) 31, 214
MwoI GCNNNNNNNGC 2 cut(s) 56, 122
NdeII GATC 2 cut(s) 91, 226
NlaIII CATG 3 cut(s) 147, 160, 171
NlaIV GGNNCC 2 cut(s) 35, 174
NmuCI GTSAC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 35, 174
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 35, 136
RsaNI GTAC 2 cut(s) 34, 135
RseI CAYNNNNRTG 1 cut(s) 142
Sau3AI GATC 2 cut(s) 91, 226
SduI GDGCHC 1 cut(s) 175
SetI ASST 3 cut(s) 39, 198, 213
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 2 cut(s) 57, 114
SspMI CTAG 1 cut(s) 257
TaqI TCGA 1 cut(s) 90
TaqII GACCGA 1 cut(s) 176
TatI WGTACW 1 cut(s) 134
TfiI GAWTC 1 cut(s) 164
TseFI GTSAC 1 cut(s) 186
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 170
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.