Rh6DG252700

Ubiquitin-2 like Rad60 SUMO-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
44177710 .. 44178970
1261 bp
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UTR
Exon/CDS
Intron
Rh6DG252700.1

Sequence Viewer

Length: 387 bp
ATGATGCGTGTTCCGGCGCGATTCACTGCACTCTCTCCCACTTTCACAATGGCAGATTTTACCAAAGAACTCAAACCCCTTTTCGATTACAATTGCGTACAGCCTCTCAATGTCATCTCCTTTGACGACGACGACGAGGATGAGGTGTCTGCTTCTCCTCCAACCAAGAAGAGGAAGAAGGCTTCAAATTCAGTAGTTGAAAAGGTTGATGACAGTGTGAAGTTTGGTTCTTGCTTAATCCGCCAAGAATCTAGTGCTTCACCTTGCTGGATACGACAATGTAAAGGATTGAGGTTGGCTACCTGCATCCAGGATAGTGGTGTCAAAGAAATCAAGCCCAAGAGGAGTACAATCATGGGTAAAACTAAGAAAGGCTATCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.31

Weight (kDa)

9.15

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AccII CGCG 1 cut(s) 19
AciI CCGC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 2 cut(s) 99, 349
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 186, 200
AjnI CCWGG 1 cut(s) 309
ApoI RAATTY 1 cut(s) 187
AspLEI GCGC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 264
BfaI CTAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 311
BfuI GTATCC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 145, 306
BseLI CCNNNNNNNGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 147, 358
BsgI GTGCAG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 171
BspACI CCGC 1 cut(s) 241
BspFNI CGCG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 145, 306
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstUI CGCG 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 317
BsuI GTATCC 1 cut(s) 264
BtsCI GGATG 2 cut(s) 145, 306
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 220
BveI ACCTGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 98, 348
CviAII CATG 2 cut(s) 355, 384
CviJI RGCY 5 cut(s) 103, 182, 299, 337, 375
CviKI_1 RGCY 5 cut(s) 103, 182, 299, 337, 375
CviQI GTAC 2 cut(s) 98, 348
DdeI CTNAG 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 358, 387
FaiI YATR 2 cut(s) 356, 385
FatI CATG 2 cut(s) 354, 383
FokI GGATG 2 cut(s) 152, 293
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 18
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 19
Hin1II CATG 2 cut(s) 358, 387
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 21, 248
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 252
Hpy99I CGWCG 3 cut(s) 131, 134, 137
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 29, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 2 cut(s) 358, 387
HspAI GCGC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 27, 253, 296, 316, 323
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 252
MboII GAAGA 2 cut(s) 181, 187
MfeI CAATTG 1 cut(s) 91
MluCI AATT 2 cut(s) 91, 187
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 7 cut(s) 114, 130, 136, 165, 168, 285, 336
MseI TTAA 1 cut(s) 236
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 240
NlaIII CATG 2 cut(s) 358, 387
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 2 cut(s) 21, 248
PfoI TCCNGGA 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
RsaI GTAC 2 cut(s) 99, 349
RsaNI GTAC 2 cut(s) 98, 348
SaqAI TTAA 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 311
SetI ASST 5 cut(s) 147, 207, 265, 296, 305
SfaNI GCATC 1 cut(s) 315
Sse9I AATT 2 cut(s) 91, 187
SsiI CCGC 1 cut(s) 241
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 91, 187
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 2 cut(s) 21, 248
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 2 cut(s) 31, 220
TspRI CASTG 2 cut(s) 31, 220
XapI RAATTY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.