Rmu_sc0001700.1_g000048

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001700.1
OG0001045
Physical Location & Seq
Reverse (-)
221100 .. 223990
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001700.1_g000048.1.cds

Sequence Viewer

Length: 606 bp
atgattttgcaggcagattttaccaaagaactcaaaccccttttcgattacaatcgcgtacagcctctcagtgtcatctcctttgactacgacgacggtggtgacctcttttcgataactggaatattcaatcaaggcttgaattgtgtccaagttcggtattttgaagcgttcaatgtttctattgtaaaggatgaggcgtctgcttctccttcgaccaagaagaggaagaaggcttcgaattcagtagttgaaaaggttgatgacagtgtgaaggttggttcttgcttaatccgccaagaatctggtgcttcaccttgctggatacgacaattgaggaagcacattctgaagctggaacaagacattgacttgcttaaggcagaggccaaaagaaaagttgaatttagttatgatgttattgaaggaactccagaagatattgagtgtgttgagtctggagctcctcaaacttcaagcttcttagactctaatgaggccatgagagtagccaagcttgcaaagctagacactgaagtaaatttctggatgtattttcctaggagagtactattagacgtactccttttatggataaaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

201

Amino Acids

22.85

Weight (kDa)

5.24

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 295
AcsI RAATTY 3 cut(s) 241, 404, 541
AcuI CTGAAG 2 cut(s) 371, 555
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 3 cut(s) 60, 570, 582
AfiI CCNNNNNNNGG 1 cut(s) 225
AflII CTTAAG 1 cut(s) 377
AgsI TTSAA 8 cut(s) 130, 142, 167, 175, 254, 404, 425, 477
AluBI AGCT 5 cut(s) 355, 464, 480, 517, 526
AluI AGCT 5 cut(s) 355, 464, 480, 517, 526
Alw21I GWGCWC 1 cut(s) 466
AoxI GGCC 2 cut(s) 387, 498
ApoI RAATTY 3 cut(s) 241, 404, 541
AspA2I CCTAGG 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 113, 306
AsuII TTCGAA 1 cut(s) 239
AvrII CCTAGG 1 cut(s) 560
BanII GRGCYC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 466
BciVI GTATCC 1 cut(s) 318
BfaI CTAG 2 cut(s) 527, 561
BfrI CTTAAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 560
BmcAI AGTACT 1 cut(s) 570
BpmI CTGGAG 2 cut(s) 417, 480
Bpu14I TTCGAA 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 560
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 2 cut(s) 199, 555
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 389, 500
BsiHKAI GWGCWC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 2 cut(s) 389, 500
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 466
BspACI CCGC 1 cut(s) 295
BspANI GGCC 2 cut(s) 389, 500
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 377
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 560
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 98, 269
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 200
BstAFI CTTAAG 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 12, 519
BstDEI CTNAG 2 cut(s) 68, 484
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 2 cut(s) 199, 555
BstFNI CGCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 294, 518, 523
BstPI GGTNACC 1 cut(s) 101
BstUI CGCG 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 305
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 389, 500
BtsCI GGATG 2 cut(s) 199, 555
BtsIMutI CAGTG 3 cut(s) 76, 274, 531
Cac8I GCNNGC 2 cut(s) 12, 519
CseI GACGC 1 cut(s) 189
Csp6I GTAC 3 cut(s) 59, 569, 581
CviAII CATG 1 cut(s) 502
CviQI GTAC 3 cut(s) 59, 569, 581
DdeI CTNAG 2 cut(s) 68, 484
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 371, 555
Eco91I GGTNACC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 1 cut(s) 505
FaiI YATR 3 cut(s) 414, 503, 592
FatI CATG 1 cut(s) 501
FokI GGATG 2 cut(s) 206, 562
FriOI GRGCYC 1 cut(s) 466
FspBI CTAG 2 cut(s) 527, 561
GsuI CTGGAG 2 cut(s) 417, 480
HaeIII GGCC 2 cut(s) 389, 500
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 505
HindIII AAGCTT 2 cut(s) 478, 515
HinfI GANTC 3 cut(s) 302, 455, 488
HphI GGTGA 2 cut(s) 113, 306
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 3 cut(s) 434, 459, 547
Hpy99I CGWCG 2 cut(s) 95, 98
HpyAV CCTTC 4 cut(s) 222, 226, 268, 419
HpyCH4III ACNGT 2 cut(s) 98, 269
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 2 cut(s) 10, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 518, 523
HpyF3I CTNAG 2 cut(s) 68, 484
HpySE526I ACGT 1 cut(s) 579
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 505
LmnI GCTCC 2 cut(s) 461, 469
LpnPI CCDG 7 cut(s) 105, 291, 307, 341, 444, 447, 532
MaeI CTAG 2 cut(s) 527, 561
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 101
MboII GAAGA 3 cut(s) 235, 241, 449
MfeI CAATTG 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 5 cut(s) 142, 241, 332, 404, 541
MlyI GAGTC 2 cut(s) 464, 482
MnlI CCTC 8 cut(s) 75, 116, 190, 219, 330, 379, 477, 490
MseI TTAA 2 cut(s) 290, 378
MspCI CTTAAG 1 cut(s) 377
MunI CAATTG 1 cut(s) 332
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 294, 518, 523
NlaIII CATG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 239
PfeI GAWTC 1 cut(s) 302
PleI GAGTC 2 cut(s) 463, 482
PpsI GAGTC 2 cut(s) 463, 482
Psp124BI GAGCTC 1 cut(s) 466
PspEI GGTNACC 1 cut(s) 101
RsaI GTAC 3 cut(s) 60, 570, 582
RsaNI GTAC 3 cut(s) 59, 569, 581
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 290, 378
ScaI AGTACT 1 cut(s) 570
SchI GAGTC 2 cut(s) 464, 482
SduI GDGCHC 1 cut(s) 466
SfuI TTCGAA 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 5 cut(s) 142, 241, 332, 404, 541
SsiI CCGC 1 cut(s) 295
SspI AATATT 1 cut(s) 126
SspMI CTAG 2 cut(s) 527, 561
SstI GAGCTC 1 cut(s) 466
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 98, 269
TaiI ACGT 1 cut(s) 582
TaqI TCGA 4 cut(s) 45, 113, 215, 239
TasI AATT 5 cut(s) 142, 241, 332, 404, 541
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 2 cut(s) 290, 378
Tru9I TTAA 2 cut(s) 290, 378
TscAI CASTG 3 cut(s) 76, 274, 538
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspRI CASTG 3 cut(s) 76, 274, 538
Vha464I CTTAAG 1 cut(s) 377
XapI RAATTY 3 cut(s) 241, 404, 541
XmaJI CCTAGG 1 cut(s) 560
XspI CTAG 2 cut(s) 527, 561
ZrmI AGTACT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.