Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000585.1

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

24876 .. 25947

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000585.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggtcagtgctggagtagaaccaaatgttcacacatatggggcactaattgatggttgtggcagagttggggaagtggcaaaggcatttggtgcttttgggataatgaggtctaaggtattggattttcaggtagttccattgactgctgttgttattgttaatacacctcaaaagctaccgtttattgatgtcgcaaaaggagttcgcatgttttcaaagttgaaggtttctcatctaaccattcctattgtcattttgatctatctaggtgccatgtgttgctgtactttaaaggttaagcagtccaacattgactttgaagcagcaattggagaacttgaagatgaagataatgccgggaagaatcagcttgcatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

127

Amino Acids

13.58

Weight (kDa)

6.7

Isoelectric Point (pI)

23.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	219, 226, 323, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	2 cut(s)	178, 373
AluI	AGCT	2 cut(s)	178, 373
ApeKI	GCWGC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	361
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	272
BssMI	GATC	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	2 cut(s)	214, 381
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	211, 277, 378
CviJI	RGCY	2 cut(s)	178, 373
CviKI_1	RGCY	2 cut(s)	178, 373
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DraI	TTTAAA	1 cut(s)	294
FaeI	CATG	3 cut(s)	214, 280, 381
FaiI	YATR	5 cut(s)	37, 39, 212, 278, 379
FatI	CATG	3 cut(s)	210, 276, 377
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	360
Hin1II	CATG	3 cut(s)	214, 280, 381
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	360
Hpy166II	GTNNAC	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	214, 280, 381
Kzo9I	GATC	1 cut(s)	261
LpnPI	CCDG	2 cut(s)	116, 373
Lsp1109I	GCAGC	1 cut(s)	338
MaeI	CTAG	1 cut(s)	269
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	356, 362, 376
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	48, 330
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	2 cut(s)	102, 180
MseI	TTAA	3 cut(s)	162, 293, 300
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	214, 280, 381
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	2 cut(s)	214, 381
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	162, 293, 300
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	113, 120, 135, 172, 180, 231, 274, 300, 375
SgeI	CNNG	8 cut(s)	24, 143, 223, 281, 289, 353, 372, 373
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	48, 330
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	183
TasI	AATT	2 cut(s)	48, 330
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	162, 293, 300
Tru9I	TTAA	3 cut(s)	162, 293, 300
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	13
XceI	RCATGY	2 cut(s)	214, 381
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.