Rorug01G0102800

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001045
Physical Location & Seq
Forward (+)
17097726 .. 17099096
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0102800.1

Sequence Viewer

Length: 1371 bp
ATGTCTATGGATAGAAGATCAGATGAATACGAGAATGGGGTTGACCGTTTTTGTAAATTTACTCTACACCATGCTGCTGATCCCAGTTCCATTCGTTGTCCTTGTTTAGAATGTGGACATGTTAAACCACAGACTATTAAGGAGGTTAGAAGTCATTTGCTTTGTTATGGTATTGATCAAAGCTATGTTACATGGTATTGGGATGGAGAGCCTATTCTTAGTTCAGATCAATTAATAGAAGATGAAATCTGGGAAAGCTACAATGAAAGCAATTTAATGGAAAACACTGTAGAGATGGTTGAAGCTGCGAGGGATGAATATGTTAGCAATCTAGAAGCATTTGAGAAGTTGCTAGAAGATGCCGAGAAACCTATATATCCTGGTTGTGTGAAATTTACTAAGTTATCAACACTAGTCAGATTGTATAACTTGAAAGCACAAGGCGGGTGGCCTGATAAAAGCTTTTCAGCATTATTGAAATTCTTAGGAGAACTACTTCCACAAATGAATGAGATGCCTTCAACCTTGTATGCAGCGAAGAAGACATTGGGGTCCTTGGGGATGGAGTATGAGAAAATACACGCATGTCCTAATGATTGCATCCTATATAGGAAAGAGTATTCAGAAGCATCTGTATGTCCTAGTTGTGGTGTGTCTAGATGGAAGGTTAGTAAGAATTCGAGTGAAGTTCAGAAAAAACAAGTACCAGCAAAGGTTATGTGGTATTTTCCCCCAATCCCTAGATTTAGAAGGATGTTTCGTAATAGGAATACTGCAAAAAACTTAATATGGCATGCCACAAAAAGAGAAGAAGATGGTAAACTTCGCCATCCAGCTGACTCTCCTTCATGGAAGCTTGTAGATCACATGTGGCCAGATTTTGGGGACGACCCTAGAAACCTTCGATTGGCAATTTCAGCAGATGGAATAAATCCTCATGGTTGTCTTAGTAGTAGGTATAGTTGTTGGCCGGTTCTTATGGTCACCTATAACCTACCACCGTGGATGTGTTTGAAAAGAAAATTTATTATGCTAACAATGTTAATATCTGGTCCTAAACAGCCAGGTAATGATATTGATGTCTATTTGGCACCATTGGTGGACGATTTAAAAACTCTATGGGATGTCGGTGTCAAAGCATATGATGCATACACACAAGAGACCTTTATGTTAAAGGCTATTTTGCTATGGACAATAAATGACTTCCCTGCATATGGGAATTTGTGTGGTTGTAGTGTCAAGGGATATAAAGCGTGTCCAATTTGCGGTGATAATACACATTCTGAATGTGTTGATGTTCTGAAGTCCGGCGGTAGCCGAACCTTGGTACAACGCGGGTTTGGTGGGCGGAACGCTACTTGGCCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

456

Amino Acids

52.06

Weight (kDa)

6.79

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 70 3.5e-16 Transposase-associated domain
Transposase_21 PF02992 272 - 432 1.3e-75 Transposase family tnp2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 1090
AccB7I CCANNNNNTGG 1 cut(s) 881
AccII CGCG 1 cut(s) 1335
AciI CCGC 5 cut(s) 444, 1266, 1311, 1335, 1348
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 3 cut(s) 872, 968, 1361
AcsI RAATTY 6 cut(s) 56, 392, 479, 676, 1022, 1219
AcuI CTGAAG 1 cut(s) 1322
AfaI GTAC 2 cut(s) 705, 1329
AfiI CCNNNNNNNGG 6 cut(s) 647, 881, 907, 1214, 1265, 1324
AflIII ACRYGT 2 cut(s) 118, 867
AgsI TTSAA 5 cut(s) 302, 433, 478, 522, 1015
AhlI ACTAGT 1 cut(s) 412
AjnI CCWGG 2 cut(s) 379, 1063
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 6 cut(s) 183, 258, 305, 462, 836, 856
AluI AGCT 6 cut(s) 183, 258, 305, 462, 836, 856
Alw26I GTCTC 1 cut(s) 1154
AlwI GGATC 1 cut(s) 74
AoxI GGCC 4 cut(s) 449, 872, 968, 1361
ApeKI GCWGC 3 cut(s) 74, 305, 533
ApoI RAATTY 6 cut(s) 56, 392, 479, 676, 1022, 1219
AseI ATTAAT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 552, 1052
AsuHPI GGTGA 2 cut(s) 976, 1280
AvaII GGWCC 2 cut(s) 552, 1052
BalI TGGCCA 1 cut(s) 874
BanI GGYRCC 1 cut(s) 1090
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 3 cut(s) 61, 292, 545
BccI CCATC 7 cut(s) 197, 289, 556, 654, 809, 837, 917
BciT130I CCWGG 2 cut(s) 381, 1065
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 1154
BcuI ACTAGT 1 cut(s) 412
BfaI CTAG 7 cut(s) 332, 353, 413, 642, 657, 741, 894
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 3 cut(s) 75, 306, 534
BlsI GCNGC 3 cut(s) 76, 307, 535
Bme1390I CCNGG 2 cut(s) 381, 1065
Bme18I GGWCC 2 cut(s) 552, 1052
BmgT120I GGNCC 2 cut(s) 552, 1052
BmiI GGNNCC 2 cut(s) 553, 1092
BmrFI CCNGG 2 cut(s) 381, 1065
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 5 cut(s) 349, 504, 609, 638, 1135
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 3 cut(s) 555, 1001, 1323
Bsc4I CCNNNNNNNGG 6 cut(s) 647, 881, 907, 1214, 1265, 1324
Bse118I RCCGGY 1 cut(s) 970
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 381, 1065
BseDI CCNNGG 3 cut(s) 555, 1001, 1323
BseGI GGATG 8 cut(s) 208, 319, 567, 600, 759, 829, 1011, 1129
BseLI CCNNNNNNNGG 6 cut(s) 647, 881, 907, 1214, 1265, 1324
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 61, 292, 545
Bsh1236I CGCG 1 cut(s) 1335
BshFI GGCC 4 cut(s) 451, 874, 970, 1363
BshNI GGYRCC 1 cut(s) 1090
BsiSI CCGG 2 cut(s) 971, 1308
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 6 cut(s) 647, 881, 907, 1214, 1265, 1324
BsmAI GTCTC 1 cut(s) 1154
BsmFI GGGAC 1 cut(s) 899
BsnI GGCC 4 cut(s) 451, 874, 970, 1363
Bso31I GGTCTC 1 cut(s) 1154
Bsp143I GATC 5 cut(s) 17, 79, 175, 226, 862
BspACI CCGC 5 cut(s) 444, 1266, 1311, 1335, 1348
BspANI GGCC 4 cut(s) 451, 874, 970, 1363
BspFNI CGCG 1 cut(s) 1335
BspLI GGNNCC 2 cut(s) 553, 1092
BspPI GGATC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 1090
BspTNI GGTCTC 1 cut(s) 1154
BsrFI RCCGGY 1 cut(s) 970
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 970
BssECI CCNNGG 3 cut(s) 555, 1001, 1323
BssMI GATC 5 cut(s) 17, 79, 175, 226, 862
BssT1I CCWWGG 2 cut(s) 555, 1323
Bst2UI CCWGG 2 cut(s) 381, 1065
Bst4CI ACNGT 3 cut(s) 47, 289, 1002
BstAPI GCANNNNNTGC 1 cut(s) 1145
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 4 cut(s) 218, 399, 484, 947
BstDSI CCRYGG 1 cut(s) 1001
BstEII GGTNACC 1 cut(s) 982
BstF5I GGATG 8 cut(s) 208, 319, 567, 600, 759, 829, 1011, 1129
BstFNI CGCG 1 cut(s) 1335
BstKTI GATC 5 cut(s) 20, 82, 178, 229, 865
BstMAI GTCTC 1 cut(s) 1154
BstMBI GATC 5 cut(s) 17, 79, 175, 226, 862
BstMWI GCNNNNNNNGC 2 cut(s) 917, 1145
BstNI CCWGG 2 cut(s) 381, 1065
BstNSI RCATGY 4 cut(s) 122, 588, 797, 871
BstPI GGTNACC 1 cut(s) 982
BstSCI CCNGG 2 cut(s) 379, 1063
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 1 cut(s) 1335
BstV1I GCAGC 3 cut(s) 61, 292, 545
BstV2I GAAGAC 1 cut(s) 548
BsuRI GGCC 4 cut(s) 451, 874, 970, 1363
BtgI CCRYGG 1 cut(s) 1001
BtsCI GGATG 8 cut(s) 208, 319, 567, 600, 759, 829, 1011, 1129
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 795
Cfr10I RCCGGY 1 cut(s) 970
Cfr13I GGNCC 2 cut(s) 552, 1052
Csp6I GTAC 2 cut(s) 704, 1328
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CviAII CATG 8 cut(s) 71, 119, 192, 585, 794, 849, 868, 938
CviQI GTAC 2 cut(s) 704, 1328
DdeI CTNAG 4 cut(s) 218, 399, 484, 947
DpnI GATC 5 cut(s) 19, 81, 177, 228, 864
DpnII GATC 5 cut(s) 17, 79, 175, 226, 862
DraI TTTAAA 1 cut(s) 1110
DrdI GACNNNNNNGTC 1 cut(s) 550
DseDI GACNNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 3 cut(s) 872, 968, 1361
EciI GGCGGA 1 cut(s) 1363
Eco130I CCWWGG 2 cut(s) 555, 1323
Eco31I GGTCTC 1 cut(s) 1154
Eco47I GGWCC 2 cut(s) 552, 1052
Eco57I CTGAAG 1 cut(s) 1322
Eco91I GGTNACC 1 cut(s) 982
EcoO109I RGGNCCY 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 982
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 379, 1063
EcoT14I CCWWGG 2 cut(s) 555, 1323
EcoT22I ATGCAT 1 cut(s) 1150
ErhI CCWWGG 2 cut(s) 555, 1323
FaeI CATG 8 cut(s) 74, 122, 195, 588, 797, 852, 871, 941
FaqI GGGAC 1 cut(s) 899
FatI CATG 8 cut(s) 70, 118, 191, 584, 793, 848, 867, 937
FauI CCCGC 2 cut(s) 437, 1328
FauNDI CATATG 2 cut(s) 1141, 1213
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 75, 306, 534
FokI GGATG 8 cut(s) 215, 326, 574, 587, 766, 816, 1018, 1136
Fsp4HI GCNGC 3 cut(s) 75, 306, 534
FspBI CTAG 7 cut(s) 332, 353, 413, 642, 657, 741, 894
GluI GCNGC 3 cut(s) 75, 306, 534
HaeIII GGCC 4 cut(s) 451, 874, 970, 1363
HapII CCGG 2 cut(s) 971, 1308
Hin1II CATG 8 cut(s) 74, 122, 195, 588, 797, 852, 871, 941
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 2 cut(s) 460, 854
HinfI GANTC 1 cut(s) 839
HpaII CCGG 2 cut(s) 971, 1308
HphI GGTGA 2 cut(s) 976, 1280
Hpy166II GTNNAC 4 cut(s) 43, 116, 821, 1102
Hpy188I TCNGA 7 cut(s) 22, 226, 419, 625, 693, 1285, 1302
Hpy188III TCNNGA 2 cut(s) 332, 657
Hpy8I GTNNAC 4 cut(s) 43, 116, 821, 1102
HpyAV CCTTC 5 cut(s) 528, 658, 744, 855, 911
HpyCH4III ACNGT 3 cut(s) 47, 289, 1002
HpyCH4V TGCA 5 cut(s) 533, 600, 776, 1148, 1211
HpyF10VI GCNNNNNNNGC 2 cut(s) 917, 1145
HpyF3I CTNAG 4 cut(s) 218, 399, 484, 947
Hsp92II CATG 8 cut(s) 74, 122, 195, 588, 797, 852, 871, 941
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 17, 79, 175, 226, 862
Lsp1109I GCAGC 3 cut(s) 61, 292, 545
LweI GCATC 5 cut(s) 349, 504, 609, 638, 1135
MaeI CTAG 7 cut(s) 332, 353, 413, 642, 657, 741, 894
MaeIII GTNAC 2 cut(s) 187, 982
MalI GATC 5 cut(s) 19, 81, 177, 228, 864
MboI GATC 5 cut(s) 17, 79, 175, 226, 862
MboII GAAGA 7 cut(s) 27, 251, 368, 550, 553, 821, 824
MlsI TGGCCA 1 cut(s) 874
MluNI TGGCCA 1 cut(s) 874
MlyI GAGTC 1 cut(s) 833
MnlI CCTC 3 cut(s) 136, 303, 945
Mox20I TGGCCA 1 cut(s) 874
Mph1103I ATGCAT 1 cut(s) 1150
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 874
MseI TTAA 8 cut(s) 123, 138, 233, 275, 785, 1043, 1109, 1172
MslI CAYNNNNRTG 1 cut(s) 634
Msp20I TGGCCA 1 cut(s) 874
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 2 cut(s) 971, 1308
MspR9I CCNGG 2 cut(s) 381, 1065
MvaI CCWGG 2 cut(s) 381, 1065
MvnI CGCG 1 cut(s) 1335
MwoI GCNNNNNNNGC 2 cut(s) 917, 1145
NdeI CATATG 2 cut(s) 1141, 1213
NdeII GATC 5 cut(s) 17, 79, 175, 226, 862
NlaIII CATG 8 cut(s) 74, 122, 195, 588, 797, 852, 871, 941
NlaIV GGNNCC 2 cut(s) 553, 1092
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 1150
NspI RCATGY 4 cut(s) 122, 588, 797, 871
PaeI GCATGC 1 cut(s) 797
PciI ACATGT 2 cut(s) 118, 867
PdmI GAANNNNTTC 1 cut(s) 495
PflMI CCANNNNNTGG 1 cut(s) 881
PkrI GCNGC 3 cut(s) 76, 307, 535
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
PpuMI RGGWCCY 1 cut(s) 552
PscI ACATGT 2 cut(s) 118, 867
PshBI ATTAAT 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 379, 1063
PspEI GGTNACC 1 cut(s) 982
PspGI CCWGG 2 cut(s) 379, 1063
PspN4I GGNNCC 2 cut(s) 553, 1092
PspPI GGNCC 2 cut(s) 552, 1052
PspPPI RGGWCCY 1 cut(s) 552
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 2 cut(s) 705, 1329
RsaNI GTAC 2 cut(s) 704, 1328
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 8 cut(s) 123, 138, 233, 275, 785, 1043, 1109, 1172
SatI GCNGC 3 cut(s) 75, 306, 534
Sau3AI GATC 5 cut(s) 17, 79, 175, 226, 862
Sau96I GGNCC 2 cut(s) 552, 1052
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 381, 1065
SfaNI GCATC 5 cut(s) 349, 504, 609, 638, 1135
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 2 cut(s) 552, 1052
SmiMI CAYNNNNRTG 1 cut(s) 634
SpeI ACTAGT 1 cut(s) 412
SphI GCATGC 1 cut(s) 797
SsiI CCGC 5 cut(s) 444, 1266, 1311, 1335, 1348
SspMI CTAG 7 cut(s) 332, 353, 413, 642, 657, 741, 894
StyD4I CCNGG 2 cut(s) 379, 1063
StyI CCWWGG 2 cut(s) 555, 1323
TaaI ACNGT 3 cut(s) 47, 289, 1002
TaqI TCGA 2 cut(s) 680, 904
Tru1I TTAA 8 cut(s) 123, 138, 233, 275, 785, 1043, 1109, 1172
Tru9I TTAA 8 cut(s) 123, 138, 233, 275, 785, 1043, 1109, 1172
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 3 cut(s) 74, 305, 533
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 6 cut(s) 39, 258, 279, 330, 521, 837
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 881
VpaK11BI GGWCC 2 cut(s) 552, 1052
VspI ATTAAT 1 cut(s) 233
XapI RAATTY 6 cut(s) 56, 392, 479, 676, 1022, 1219
XbaI TCTAGA 2 cut(s) 331, 656
XceI RCATGY 4 cut(s) 122, 588, 797, 871
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 7 cut(s) 332, 353, 413, 642, 657, 741, 894
Zsp2I ATGCAT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.