RchiOBHm_Chr5g0002061

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
1161817 .. 1162246
430 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28344

Sequence Viewer

Length: 237 bp
ATGAAGCAGGGCAGCTTGAGTCCTGAAGAGCATGATGCTCTGGTATCTGCTTTACAAGTAGCTGGGGCAAAAAAGAGCTTAATCCACAAGAAAAAATCTACTGCAGAGCGAAGAGTGAGGGAAGATAGCGCGCAGACTTCATCTATAGAGAAATTCATAACCAGTCTTGAGTCCATGGGAGTGAGAGTTTATGGAGTTGATGAACCCAATATGAGTTCTACAAGCAAAGATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.51

Weight (kDa)

8.05

Isoelectric Point (pI)

60.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 45
AluBI AGCT 3 cut(s) 15, 62, 78
AluI AGCT 3 cut(s) 15, 62, 78
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 2 cut(s) 131, 133
BbvI GCAGC 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 102, 144
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmsI GCATC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 37, 188
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse1I ACTGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 162
BsePI GCGCGC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 174
BssHII GCGCGC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 21, 106
BstC8I GCNNGC 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 2 cut(s) 131, 133
BstSFI CTRYAG 2 cut(s) 102, 144
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 2 cut(s) 131, 133
CviAII CATG 2 cut(s) 32, 175
CviJI RGCY 3 cut(s) 15, 62, 78
CviKI_1 RGCY 3 cut(s) 15, 62, 78
Eam1104I CTCTTC 2 cut(s) 21, 106
EarI CTCTTC 2 cut(s) 21, 106
Eco130I CCWWGG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 35, 178
FaiI YATR 6 cut(s) 33, 146, 158, 176, 192, 212
FatI CATG 2 cut(s) 31, 174
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
GlaI GCGC 2 cut(s) 130, 132
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 66
HhaI GCGC 2 cut(s) 131, 133
Hin1II CATG 2 cut(s) 35, 178
Hin6I GCGC 2 cut(s) 129, 131
HinP1I GCGC 2 cut(s) 129, 131
HinfI GANTC 2 cut(s) 19, 170
Hpy188III TCNNGA 2 cut(s) 23, 167
HpyCH4V TGCA 1 cut(s) 104
Hsp92II CATG 2 cut(s) 35, 178
HspAI GCGC 2 cut(s) 129, 131
LguI GCTCTTC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 26, 36, 48, 175
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 38, 123, 134
MluCI AATT 1 cut(s) 152
MlyI GAGTC 2 cut(s) 28, 179
MnlI CCTC 1 cut(s) 111
MseI TTAA 2 cut(s) 80, 235
MslI CAYNNNNRTG 1 cut(s) 179
MvnI CGCG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 174
NlaIII CATG 2 cut(s) 35, 178
PauI GCGCGC 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 27, 178
PpsI GAGTC 2 cut(s) 27, 178
PspFI CCCAGC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 106
PteI GCGCGC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 80, 235
SatI GCNGC 1 cut(s) 13
SchI GAGTC 2 cut(s) 28, 179
SetI ASST 3 cut(s) 17, 64, 80
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 2 cut(s) 102, 144
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 16, 167
SmoI CTYRAG 2 cut(s) 16, 167
Sse9I AATT 1 cut(s) 152
StyI CCWWGG 1 cut(s) 174
TasI AATT 1 cut(s) 152
Tru1I TTAA 2 cut(s) 80, 235
Tru9I TTAA 2 cut(s) 80, 235
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 4 cut(s) 17, 129, 145, 216
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.