Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Reverse (-)

31211402 .. 31214519

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG260600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCCCCAATTGAATCTATGTTAGAGTTTGATCTCAAGATACTTCACATCTGTGCTGGTGCTGCTGCAGTATCAAATGGGATAGCTGAGAGTGATGTACTGAAATCATTGTCTCTAATCATTGATCCAGACTTCAGGACAGACATCGTCTCATGTCCTGACCAGTTTGAGCAAAAGGCAAATCATGAGGTGGTGAACGAGCTTCCTTGGGTCAAGAATGTCAATGTGACTGTGTCAGCACAATCTGCAAAACCCCTTTATGCTGGGCAACTTCCAGCAGGGTTACAGACAATTTTAAATATTGTGCCAGTTTCTAGTTGCAAGGCTTTGGATAAATCGAAGTATATGAATGGCCTTCGAGAAGTAAGAAAGCACATTCAAACAGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

130

Amino Acids

14.13

Weight (kDa)

5.86

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	14, 380
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	86, 202
AluI	AGCT	2 cut(s)	86, 202
Alw26I	GTCTC	2 cut(s)	117, 154
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	62, 65
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	49, 52
BcoDI	GTCTC	2 cut(s)	117, 154
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	163, 308
BseDI	CCNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	163, 308
BseXI	GCAGC	2 cut(s)	49, 52
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	117, 154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	31, 124
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	163, 308
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	31, 124
BssT1I	CCWWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	34, 127
BstMAI	GTCTC	2 cut(s)	117, 154
BstMBI	GATC	2 cut(s)	31, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 245
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	49, 52
BsuRI	GGCC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	153, 185
CviJI	RGCY	4 cut(s)	86, 202, 326, 354
CviKI_1	RGCY	4 cut(s)	86, 202, 326, 354
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	33, 126
DpnII	GATC	2 cut(s)	31, 124
DraI	TTTAAA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	156, 188
FaiI	YATR	6 cut(s)	20, 154, 186, 261, 345, 347
FatI	CATG	2 cut(s)	152, 184
Fnu4HI	GCNGC	2 cut(s)	63, 66
Fsp4HI	GCNGC	2 cut(s)	63, 66
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	63, 66
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	156, 188
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	7 cut(s)	37, 128, 136, 158, 185, 214, 359
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	68, 248, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 245
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	156, 188
Kzo9I	GATC	2 cut(s)	31, 124
Lsp1109I	GCAGC	2 cut(s)	49, 52
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	226, 282
MalI	GATC	2 cut(s)	33, 126
MboI	GATC	2 cut(s)	31, 124
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	2 cut(s)	9, 291
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	62, 245
NdeII	GATC	2 cut(s)	31, 124
NlaIII	CATG	2 cut(s)	156, 188
NmuCI	GTSAC	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	51
PagI	TCATGA	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	2 cut(s)	146, 232
PkrI	GCNGC	2 cut(s)	64, 67
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	386
PspPPI	RGGWCCY	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	70
PsyI	GACNNNGTC	2 cut(s)	146, 232
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	63, 66
Sau3AI	GATC	2 cut(s)	31, 124
Sau96I	GGNCC	1 cut(s)	386
SetI	ASST	4 cut(s)	88, 192, 204, 391
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	9, 291
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	338, 358
TasI	AATT	2 cut(s)	9, 291
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	62, 65
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	362
Tth111I	GACNNNGTC	2 cut(s)	146, 232
VpaK11BI	GGWCC	1 cut(s)	386
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.