Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001045

Physical Location & Seq

Genomic Coordinates Forward (+)

85417917 .. 85418871

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG624300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTTATGCACCCAGAGAAACAGAAGGAAACTGAAGGTGATCAAGGGGAATTAAAAGATGTGAACGAACATGATCGAGATCTGCACATCCTCGTTTTCCGTTCAGTCATTACCTCAACAGAAAAAGCTGAAATTGAATTTATGAAGCAGGGCAGCTTGAGTCCCAAAGAGCTTGATGCTCTGGTATCTGCTTTACAATTAGTTGGGACAAAAAAGAGCTTGATCCACGAGAAAAAATCTACCACAGAACGAAGAGTGAGGGAAGATAGCACACAAACTTCATCTATAGAGAAATTAATAACCAGTCTTGAGTCCATGGGAGTGAGAGTTTATGGAGTTGATGAACCCAATATGAGTTCTACAAGCAAAGATATTTCATGGGATAATCTTGCTGGATATGATCTGCAAAAGCGGCCGTCCCGATGTTATATGTTCCCCTTGAGGTTATCTTGTCCAAGTACTATGGTGAGAGTGAACGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

161

Amino Acids

18.35

Weight (kDa)

5.84

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001045)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04540
rosa_chinensis	RchiOBHm_Chr1g0338921 RchiOBHm_Chr1g0342131 RchiOBHm_Chr2g0159881 RchiOBHm_Chr5g0002061 RchiOBHm_Chr5g0051771 RchiOBHm_Chr5g0076941 RchiOBHm_Chr6g0282081 RchiOBHm_Chr7g0198131
rosa_laevigata	RLG00000003496 RLG00000019204 RLG00000019210 RLG00000031093 RLG00000034339 RLG00000035955
rosa_multiflora	Rmu_co8265413.1_g000001 Rmu_sc0000569.1_g000024 Rmu_sc0000585.1_g000006 Rmu_sc0000780.1_g000015 Rmu_sc0001192.1_g000043 Rmu_sc0001700.1_g000048 Rmu_sc0003092.1_g000032 Rmu_sc0004502.1_g000020 Rmu_sc0004991.1_g000005 Rmu_sc0041726.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033570 Rroxscaffold_1G00035950 Rroxscaffold_1G00047770 Rroxscaffold_2G00124770 Rroxscaffold_2G00143760 Rroxscaffold_3G00227140 Rroxscaffold_5G00341620
rosa_rugosa	Rorug01G0102800 Rorug02G0472100 Rorug03G0011600 Rorug04G0024700 Rorug05G0042700
rosa_samantha	Rh1AG421900 Rh2AG356700 Rh2BG577700 Rh2CG210300 Rh2DG229300 Rh2DG624300 Rh3CG229200 Rh4AG386800 Rh4CG238600 Rh4DG226600 Rh4DG393700 Rh5AG380700 Rh5BG360500 Rh5DG260600 Rh6AG053500 Rh6AG258300 Rh6BG316700 Rh6CG120500 Rh6CG260600 Rh6DG252700 Rh6DG497500 Rh7AG364300 Rh7CG383100
rosa_wichuraiana	Rw6G022360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	4 cut(s)	128, 156, 172, 219
AluI	AGCT	4 cut(s)	128, 156, 172, 219
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	50, 478
BauI	CACGAG	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	154, 413
BlsI	GCNGC	2 cut(s)	155, 414
BmcAI	AGTACT	1 cut(s)	460
BmsI	GCATC	1 cut(s)	166
BpuEI	CTTGAG	3 cut(s)	178, 329, 460
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse1I	ACTGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	303
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	416
BslFI	GGGAC	3 cut(s)	147, 220, 403
BsmFI	GGGAC	3 cut(s)	147, 220, 403
BsnI	GGCC	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	40, 73, 79, 222, 400
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	5 cut(s)	40, 73, 79, 222, 400
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	5 cut(s)	43, 76, 82, 225, 403
BstMBI	GATC	5 cut(s)	40, 73, 79, 222, 400
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	3 cut(s)	71, 316, 378
CviJI	RGCY	5 cut(s)	128, 156, 172, 219, 415
CviKI_1	RGCY	5 cut(s)	128, 156, 172, 219, 415
CviQI	GTAC	1 cut(s)	459
DpnI	GATC	5 cut(s)	42, 75, 81, 224, 402
DpnII	GATC	5 cut(s)	40, 73, 79, 222, 400
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	315
Eco52I	CGGCCG	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	3 cut(s)	74, 319, 381
FaqI	GGGAC	3 cut(s)	147, 220, 403
FatI	CATG	3 cut(s)	70, 315, 377
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	154, 413
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	154, 413
GluI	GCNGC	2 cut(s)	154, 413
HaeIII	GGCC	1 cut(s)	415
Hin1II	CATG	3 cut(s)	74, 319, 381
HinfI	GANTC	2 cut(s)	160, 311
HphI	GGTGA	2 cut(s)	50, 478
Hpy166II	GTNNAC	2 cut(s)	64, 475
Hpy188III	TCNNGA	3 cut(s)	77, 308, 420
Hpy8I	GTNNAC	2 cut(s)	64, 475
HpyAV	CCTTC	2 cut(s)	19, 29
HpyCH4V	TGCA	3 cut(s)	10, 85, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	74, 319, 381
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	40, 73, 79, 222, 400
LpnPI	CCDG	5 cut(s)	27, 134, 167, 316, 378
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	166
MalI	GATC	5 cut(s)	42, 75, 81, 224, 402
MboI	GATC	5 cut(s)	40, 73, 79, 222, 400
MboII	GAAGA	2 cut(s)	264, 275
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	5 cut(s)	50, 132, 137, 197, 293
MlyI	GAGTC	2 cut(s)	169, 320
MnlI	CCTC	4 cut(s)	101, 124, 252, 435
MseI	TTAA	2 cut(s)	53, 296
MslI	CAYNNNNRTG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	5 cut(s)	40, 73, 79, 222, 400
NlaIII	CATG	3 cut(s)	74, 319, 381
PkrI	GCNGC	2 cut(s)	155, 414
PleI	GAGTC	2 cut(s)	168, 319
PpsI	GAGTC	2 cut(s)	168, 319
PshBI	ATTAAT	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	53, 296
SatI	GCNGC	2 cut(s)	154, 413
Sau3AI	GATC	5 cut(s)	40, 73, 79, 222, 400
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	2 cut(s)	169, 320
SetI	ASST	7 cut(s)	40, 116, 130, 158, 174, 221, 446
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	3 cut(s)	157, 308, 439
SmoI	CTYRAG	3 cut(s)	157, 308, 439
Sse9I	AATT	5 cut(s)	50, 132, 137, 197, 293
SsiI	CCGC	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	315
TaqI	TCGA	1 cut(s)	76
TasI	AATT	5 cut(s)	50, 132, 137, 197, 293
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	53, 296
Tru9I	TTAA	2 cut(s)	53, 296
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	4 cut(s)	158, 270, 357, 366
TspGWI	ACGGA	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	296
XapI	RAATTY	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.